BAC Information

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BAC

Clone NameB6Ng01-182N11
Chromosome6 (Build37)
Map Location 87,763,319 - 87,811,569
singlet/doubletdoublet
Overlap geneIsy1, Cnbp
Upstream gene2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43
Downstream geneCopg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182N11.bB6Ng01-182N11.g
ACCGA008622GA008623
length1,165975
definitionB6Ng01-182N11.b B6Ng01-182N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,763,319 - 87,764,463)(87,810,598 - 87,811,569)
sequence
gaattccaagagccatgctttgcacactcatggtagtggagaactgcagc
ctcaagaaactgcctccatcccaagacgtgcactgaaccatagtggtttc
cttcctgaagttggctgtggggtgggaaatacccctcagacaggcctagc
tcacaccaagggaaaggggagtgcaaaggctgagagactcgggaaagcag
aagggtagttagtcatggctcgctggcctctgctctgccctgggctggaa
ttggtgcaggaaagaaggtattttggtctagatgtgggttctgtcagcaa
aagccaatccaccactaagacattttaaaaattagactgtgtaaccaggt
gtagtagtgtgaacctgtaatcccagcaattgggacactgaggcaggagg
gttgccttgagttcaaggacagcttggtctatacagtagcaggctggtca
gggatgtacagaagacattgtctcagaaaacgaaaaacattgtacccatg
gtgagggctgcataactcagcaaatgtactaaagccattaaaatgagagc
tgaggagatggctcagcagataaaatgctcactgtgaaggtgtaagagcc
caagttcagagttccagcagttgtactatgtcaggtactgaggtgcacgc
ctataaccataggcagagcagacacagatggatcctggaggcacactggc
cagccaacctagccaaaacggcaagctccaagctcaaatgagaccttatc
tttaaaaaagataagacggaaaacaaggaggataaaggacactcagcacc
aactctggcctctgcatgtgaatataggcacaggcacttccccaccacac
acatacatacacacacacacacacacacacacaaatgtacactttcaaag
aatcatattctatgctatataaatcacaccttgacaaatctgcatgtcct
tttttttgaccagtgtatttttttcaaaacacaatgatgatttttttttt
tcattgtattatgccttgtttgagataggaagttaaaaaaatatgttatt
tccaataataccaactttccctataaaaaaaaaaagtcttttatttttgg
atagccatttgaaataatgccatatcctcaaattcagcaagcccacagaa
ttaaaccatttttaa
gaattcaagtcatcttggccactagtgtatttacccactgaaccatttca
ctagcctcctgacttatttttaactgcaatatccattttggggtgggacg
gagaaggagtctcatgtagccaggaatgagcccaaactcatacttatctg
atgatgaccttgaacttcagacccctgactcacacccagttaccaaggag
tctctcctaatagcattatcacatagctgctccttagctcagtaagagac
ccagcatatgtccatgcatgtatcgggtgaggccctggaaattcatagtt
tcttcttctagtagtgatatcgaattatgtctttattaactgtgtatgtg
agcattctgtgtttctaagtgtgggaaccaaagcaaaacaaaatagaaac
agaactaaatgaaatagaacattctcaaaaaatattctattagagttggt
tggtagatagaggtaggaagatcaagggtcctagatctttctctgtgacc
taatgagtctgtggtcagcctggtctccttgacaattgactcagaactta
acaaaaataaagcaaaaaaacccaaaaaaataaaataaaacacaattcac
acaaattgttgtggggtatctgccagaaatgactgcctggatatagattt
aagcctatagaaagtctttattagctgttcaggatccagagtgtgtctct
gagcttttaaacataaaaaaacatgtcctgggttgacatacttcagttaa
caacaggtagccagagtggaactacaaatgccaaaaaagcaagcttagga
cattttagagacttttcccagaactgtggattttttttttagatttattt
atttatttttgtgtatatgagtactctgtagctgtacagattgcttgtga
ccttcatgtggttgttgagatttgtatttaggaactcttgctcgttctgt
caaccttgctcattcttggtcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87763319_87764463
seq2: B6Ng01-182N11.b_47_1211

seq1  GAATTCCAAGAGCCATGCTTTGCACACTCATGGTAGTGGAGAACTGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAGCCATGCTTTGCACACTCATGGTAGTGGAGAACTGCAGC  50

seq1  CTCAAGAAACTGCCTCCATCCCAAGACGTGCACTGAACCATAGTGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAACTGCCTCCATCCCAAGACGTGCACTGAACCATAGTGGTTTC  100

seq1  CTTCCTGAAGTTGGCTGTGGGGTGGGAAATACCCCTCAGACAGGCCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAAGTTGGCTGTGGGGTGGGAAATACCCCTCAGACAGGCCTAGC  150

seq1  TCACACCAAGGGAAAGGGGAGTGCAAAGGCTGAGAGACTCGGGAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCAAGGGAAAGGGGAGTGCAAAGGCTGAGAGACTCGGGAAAGCAG  200

seq1  AAGGGTAGTTAGTCATGGCTCGCTGGCCTCTGCTCTGCCCTGGGCTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAGTTAGTCATGGCTCGCTGGCCTCTGCTCTGCCCTGGGCTGGAA  250

seq1  TTGGTGCAGGAAAGAAGGTATTTTGGTCTAGATGTGGGTTCTGTCAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCAGGAAAGAAGGTATTTTGGTCTAGATGTGGGTTCTGTCAGCAA  300

seq1  AAGCCAATCCACCACTAAGACATTTTAAAAATTAGACTGTGTAACCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATCCACCACTAAGACATTTTAAAAATTAGACTGTGTAACCAGGT  350

seq1  GTAGTAGTGTGAACCTGTAATCCCAGCAATTGGGACACTGAGGCAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGTGTGAACCTGTAATCCCAGCAATTGGGACACTGAGGCAGGAGG  400

seq1  GTTGCCTTGAGTTCAAGGACAGCTTGGTCTATACAGTAGCAGGCTGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTGAGTTCAAGGACAGCTTGGTCTATACAGTAGCAGGCTGGTCA  450

seq1  GGGATGTACAGAAGACATTGTCTCAGAAAACGAAAAACATTGTACCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTACAGAAGACATTGTCTCAGAAAACGAAAAACATTGTACCCATG  500

seq1  GTGAGGGCTGCATAACTCAGCAAATGTACTAAAGCCATTAAAATGAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGCTGCATAACTCAGCAAATGTACTAAAGCCATTAAAATGAGAGC  550

seq1  TGAGGAGATGGCTCAGCAGATAAAATGCTCACTGTGAAGGTGTAAGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGATGGCTCAGCAGATAAAATGCTCACTGTGAAGGTGTAAGAGCC  600

seq1  CAAGTTCAGAGTTCCAGCAGTTGTACTATGTCAGGTACTGAGGTGCACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAGAGTTCCAGCAGTTGTACTATGTCAGGTACTGAGGTGCACGC  650

seq1  CTATAACCATAGGCAGAGCAGACACAGATGGATCCTGGAGGCACACTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACCATAGGCAGAGCAGACACAGATGGATCCTGGAGGCACACTGGC  700

seq1  CAGCCAACCTAGCCAAAACGGCAAGCTCCAAGCTCAAATGAGACCTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAACCTAGCCAAAACGGCAAGCTCCAAGCTCAAATGAGACCTTATC  750

seq1  TTTAAAAAAGATAAGACGGAAAACAAGGAGGATAAAGGACACTCAGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAGATAAGACGGAAAACAAGGAGGATAAAGGACACTCAGCACC  800

seq1  AACTCTGGCCTCTGCATGTGAATATAGGCACAGGCACTT-CCCACCACAC  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACTCTGGCCTCTGCATGTGAATATAGGCACAGGCACTTCCCCACCACAC  850

seq1  ACATACATACACACACACACACACACACACACAAATGTACACTTTCAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACACACACACACACACACACACACAAATGTACACTTTCAAAG  900

seq1  -ATCATATTCTATGCTATATAAATCACACCTTGACAAATCTGCATGTCCT  948
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTCTATGCTATATAAATCACACCTTGACAAATCTGCATGTCCT  950

seq1  TTTTTTTGA-CAGTGTA-TTTTTTCAAAACACAATGATGA--TTTTTTTT  994
      ||||||||| ||||||| ||||||||||||||||||||||  ||||||||
seq2  TTTTTTTGACCAGTGTATTTTTTTCAAAACACAATGATGATTTTTTTTTT  1000

seq1  TCA-TGTATTATG-CTTGTTTGAGATAGGGAAGTT-TAAAAATATG-TAT  1040
      ||| ||||||||| ||||||||||||| |||||||  ||||||||| |||
seq2  TCATTGTATTATGCCTTGTTTGAGATA-GGAAGTTAAAAAAATATGTTAT  1049

seq1  T--CAAT-ATA-CAACTTTTCCTAT-TAAAAAAAAAGTC--TTATTTT--  1081
      |  |||| ||| ||||||| |||||  ||||||||||||  |||||||  
seq2  TTCCAATAATACCAACTTTCCCTATAAAAAAAAAAAGTCTTTTATTTTTG  1099

seq1  GATAGCAAATTTTGAAATAATG-CATAT-CTCAAATTTCAGCAAG-CCAC  1128
      |||||| |  |||||||||||| ||||| |||||| ||||||||| ||||
seq2  GATAGCCA--TTTGAAATAATGCCATATCCTCAAA-TTCAGCAAGCCCAC  1146

seq1  AGATTTAA--CATTTTTAA  1145
      ||| ||||  |||||||||
seq2  AGAATTAAACCATTTTTAA  1165

seq1: chr6_87810598_87811569
seq2: B6Ng01-182N11.g_63_1037 (reverse)

seq1  AGTTGACC-AGAATGAGCAGGGTTGACCAGAGCGAGC-AGAGGTCCTAAA  48
      | |||||| |||||||||| |||||| |||| ||||| |||| |||||||
seq2  AATTGACCAAGAATGAGCAAGGTTGA-CAGAACGAGCAAGAGTTCCTAAA  49

seq1  TACAAATCTCAACAACCACATGAAGGCTCACAAGC-ATCTGTACAGCTAC  97
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TACAAATCTCAACAACCACATGAAGG-TCACAAGCAATCTGTACAGCTAC  98

seq1  AGAGTACTCATATACACAAAAATAAATAAATAAATCTAAAAAAAAAATCC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTCATATACACAAAAATAAATAAATAAATCTAAAAAAAAAATCC  148

seq1  ACAGTTCTGGG-AAAGTCTCT-AAATGTCCTAAGCTTGCTTTTTTGGCAT  195
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  ACAGTTCTGGGAAAAGTCTCTAAAATGTCCTAAGCTTGCTTTTTTGGCAT  198

seq1  TTGTAGTTCCACTCTGGCTACCTGTTGTTAACTGAAGTATGTCAACCCAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTCCACTCTGGCTACCTGTTGTTAACTGAAGTATGTCAACCCAG  248

seq1  GACATGTTTTTTTATGTTTAAAAGCTCAGAGACACACTCTGGATCCTGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTTTTTTATGTTTAAAAGCTCAGAGACACACTCTGGATCCTGAA  298

seq1  CAGCTAATAAAGACTTTCTATAGGCTTAAATCTATATCCAGGCAGTCATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATAAAGACTTTCTATAGGCTTAAATCTATATCCAGGCAGTCATT  348

seq1  TCTGGCAGATACCCCACAACAATTTGTGTGAATTGTGTTTTATTTTATTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAGATACCCCACAACAATTTGTGTGAATTGTGTTTTATTTTATTT  398

seq1  TTTTGGGTTTTTTTGCTTTATTTTTGTTAAGTTCTGAGTCAATTGTCAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTTTTTTGCTTTATTTTTGTTAAGTTCTGAGTCAATTGTCAAG  448

seq1  GAGACCAGGCTGACCACAGACTCATTAGGTCACAGAGAAAGATCTAGGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGGCTGACCACAGACTCATTAGGTCACAGAGAAAGATCTAGGAC  498

seq1  CCTTGATCTTCCTACCTCTATCTACCAACCAACTCTAATAGAATATTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATCTTCCTACCTCTATCTACCAACCAACTCTAATAGAATATTTTT  548

seq1  TGAGAATGTTCTATTTCATTTAGTTCTGTTTCTATTTTGTTTTGCTTTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGTTCTATTTCATTTAGTTCTGTTTCTATTTTGTTTTGCTTTGG  598

seq1  TTCCCACACTTAGAAACACAGAATGCTCACATACACAGTTAATAAAGACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACACTTAGAAACACAGAATGCTCACATACACAGTTAATAAAGACA  648

seq1  TAATTCGATATCACTACTAGAAGAAGAAACTATGAATTTCCAGGGCCTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCGATATCACTACTAGAAGAAGAAACTATGAATTTCCAGGGCCTCA  698

seq1  CCCGATACATGCATGGACATATGCTGGGTCTCTTACTGAGCTAAGGAGCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATACATGCATGGACATATGCTGGGTCTCTTACTGAGCTAAGGAGCA  748

seq1  GCTATGTGATAATGCTATTAGGAGAGACTCCTTGGTAACTGGGTGTGAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTGATAATGCTATTAGGAGAGACTCCTTGGTAACTGGGTGTGAGT  798

seq1  CAGGGGTCTGAAGTTCAAGGTCATCATCAGATAAGTATGAGTTTGGGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCTGAAGTTCAAGGTCATCATCAGATAAGTATGAGTTTGGGCTC  848

seq1  ATTCCTGGCTACATGAGACTCCTTCTCCGTCCCACCCCAAAATGGATATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGCTACATGAGACTCCTTCTCCGTCCCACCCCAAAATGGATATT  898

seq1  GCAGTTAAAAATAAGTCAGGAGGCTAGTGAAATGGTTCAGTGGGTAAATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAAAATAAGTCAGGAGGCTAGTGAAATGGTTCAGTGGGTAAATA  948

seq1  CACTAGTGGCCAAGATGACTTGAATTC  972
      |||||||||||||||||||||||||||
seq2  CACTAGTGGCCAAGATGACTTGAATTC  975