BAC Information

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BAC

Clone NameB6Ng01-183B18
Chromosome6 (Build37)
Map Location 106,147,916 - 106,149,073
singlet/doubletsinglet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183B18.bB6Ng01-183B18.g
ACCGA008822GA008823
length7581,172
definitionB6Ng01-183B18.b B6Ng01-183B18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcacaggcaaatggatggaactacaaaatatcctgag
tgaggtaacccaatcacaaaagaacacacctggtatgcattcactggtaa
gtggatactagcccaaaagctcaggatacacaagatacaattcacagacc
atatgcagttcaagaagaaggaagaccaaagtgtcgatgtttcagtgctt
agaaggggggaaatatggagacaaattgtggagcagagactgaaggaaag
gccacccagagactgcctcacctgggaatccatcccatatacagttgcca
aaccaggaaacggttgaggatgccaggaagtgaatgttgacaggagcctg
atatagctgtctcctgaaaggctctgccagagcctgacaaatacagaagc
agatgctcacagccagaccattggactgaacgaggtgtctccatggagga
gttggagaagagactgaaggaattgagggagtttgcagccccccccagag
gggtagggggaagcagcagtgttaaccagccagacccccggagctcctgg
ggaactggtccaccaaccaaagagtacacatggctcctgctgcacatgtg
gcagaggatagccttgttggacatcagtgagaggagcagcccttgggcct
gatggggtttctatgccccagtataggggaaggccaggtcctggagaatg
ggagtgggaaaatggtgcgggaagcacactcatagaggaaggggggagac
ggggagag

gaattctgggagcaagtgctaatgcagaggctataaaggcatgctgctta
catgcttgctcatgatggtttgctcaggaactcagggttacctgcctagg
agtggctccacatataatgggctggaaccttccatatcaatcattaattg
agaaaataccctatagaatggtctacagcctaatcttacagagacatttt
ctcagatgagtttcctatctattgactctaggtagggtccagtagagata
aaactactaatctgaagttgatgttctagaaatgttgtattttctgtact
tttctcattacattctctcctcaattatatttatgatgagagaagaagga
aaggttatcaattatattcataattgttagtatatttatttctttagatt
ttttaaaatagggtttctttgtgtagcctgggctgccctgaaattcactc
tatagaccaggctggctttgaactcagattcaccttcctctctgcctcct
gagtgctggaattaaaggtttgtgccaccattgcatacaaatggatttat
tatttaaactttatcttaaattcagtaaatctgtaaaaattaaagtgaat
ttattaattttacgtaaatataaactttgttcactgattatgagtcagta
tggaattttgatctttattgtttccatgaaaattattgagataaataccc
aaagataccactctcctatctatgagcaccaaatacttctagaaattaat
tctaacacttaaattttcagatcctacaaatgtagaatcctgggggctat
atctaaactgaggtttctaagccagtgtgctccaacatttgattatctct
tttcatagtgaattctctgtaatatttatttcattttcagtctcttgtat
taactctactacatacacatacacacttacatgagttactgaaatcttgt
tataggtatgggtatgcacatagcttaagagctgaccatttttggaatgg
gaataacctatatggggtttctgggtccatggaacaatcagattctcttt
cacacggtagcattgtccttctgctgttcttaataaggagaagaagcctg
tggaattttttaacaccccattaacatgttcagctggcaatgatcattaa
tgtaaggccttattaatgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106147916_106149073
seq2: B6Ng01-183B18.g_64_1235

seq1  GAATTCTGGGAGCAAGTGCTAATGCAGAGGCTATAAAGGCATGCTGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGCAAGTGCTAATGCAGAGGCTATAAAGGCATGCTGCTTA  50

seq1  CATGCTTGCTCATGATGGTTTGCTCAGGAACTCAGGGTTACCTGCCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGCTCATGATGGTTTGCTCAGGAACTCAGGGTTACCTGCCTAGG  100

seq1  AGTGGCTCCACATATAATGGGCTGGAACCTTCCATATCAATCATTAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTCCACATATAATGGGCTGGAACCTTCCATATCAATCATTAATTG  150

seq1  AGAAAATACCCTATAGAATGGTCTACAGCCTAATCTTACAGAGACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATACCCTATAGAATGGTCTACAGCCTAATCTTACAGAGACATTTT  200

seq1  CTCAGATGAGTTTCCTATCTATTGACTCTAGGTAGGGTCCAGTAGAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGAGTTTCCTATCTATTGACTCTAGGTAGGGTCCAGTAGAGATA  250

seq1  AAACTACTAATCTGAAGTTGATGTTCTAGAAATGTTGTATTTTCTGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTAATCTGAAGTTGATGTTCTAGAAATGTTGTATTTTCTGTACT  300

seq1  TTTCTCATTACATTCTCTCCTCAATTATATTTATGATGAGAGAAGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTACATTCTCTCCTCAATTATATTTATGATGAGAGAAGAAGGA  350

seq1  AAGGTTATCAATTATATTCATAATTGTTAGTATATTTATTTCTTTAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATCAATTATATTCATAATTGTTAGTATATTTATTTCTTTAGATT  400

seq1  TTTTAAAATAGGGTTTCTTTGTGTAGCCTGGGCTGCCCTGAAATTCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATAGGGTTTCTTTGTGTAGCCTGGGCTGCCCTGAAATTCACTC  450

seq1  TATAGACCAGGCTGGCTTTGAACTCAGATTCACCTTCCTCTCTGCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACCAGGCTGGCTTTGAACTCAGATTCACCTTCCTCTCTGCCTCCT  500

seq1  GAGTGCTGGAATTAAAGGTTTGTGCCACCATTGCATACAAATGGATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGAATTAAAGGTTTGTGCCACCATTGCATACAAATGGATTTAT  550

seq1  TATTTAAACTTTATCTTAAATTCAGTAAATCTGTAAAAATTAAAGTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAACTTTATCTTAAATTCAGTAAATCTGTAAAAATTAAAGTGAAT  600

seq1  TTATTAATTTTACGTAAATATAAACTTTGTTCACTGATTATGAGTCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTTTACGTAAATATAAACTTTGTTCACTGATTATGAGTCAGTA  650

seq1  TGGAATTTTGATCTTTATTGTTTCCATGAAAATTATTGAGATAAATACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTGATCTTTATTGTTTCCATGAAAATTATTGAGATAAATACCC  700

seq1  AAAGATACCACTCTCCTATCTATGAGCACCAAATACTTCTAGAAATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACCACTCTCCTATCTATGAGCACCAAATACTTCTAGAAATTAAT  750

seq1  TCTAACACTTAAATTTTCAGATCCTACAAATGTAGAATCCT-GGGGCTAT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTAACACTTAAATTTTCAGATCCTACAAATGTAGAATCCTGGGGGCTAT  800

seq1  ATCTAAACTGAGGTTTCTAAGCCAGTGTGCTCCAACATTTGATTATCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACTGAGGTTTCTAAGCCAGTGTGCTCCAACATTTGATTATCTCT  850

seq1  TTTCATAGTGAATTCTCTGTAATATTTATTTCA-TTTCAGTCTCTTGTAT  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCATAGTGAATTCTCTGTAATATTTATTTCATTTTCAGTCTCTTGTAT  900

seq1  TAACTCTACTACATACACATACACACTTACATGAGTTACTG-AATCTTGT  947
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAACTCTACTACATACACATACACACTTACATGAGTTACTGAAATCTTGT  950

seq1  TATAGGTAT-GGTATGCACATAGCTT-AGAGCTGACCATTTT--GGATGG  993
      ||||||||| |||||||||||||||| |||||||||||||||  | ||||
seq2  TATAGGTATGGGTATGCACATAGCTTAAGAGCTGACCATTTTTGGAATGG  1000

seq1  G-ATAACCTATAT-GGGTTTCT-GGTCCATGGAACAATCAGATTCTCCTT  1040
      | ||||||||||| |||||||| |||||||||||||||||||||||| ||
seq2  GAATAACCTATATGGGGTTTCTGGGTCCATGGAACAATCAGATTCTCTTT  1050

seq1  CACACGGTAGCCATTGTCTTCCTGCTGTTCTTAATTAAGGGAGAGAGCCC  1090
      |||||||||| ||||||| | ||||||||||||| |||||   |||  ||
seq2  CACACGGTAG-CATTGTCCTTCTGCTGTTCTTAA-TAAGGAGAAGAAGCC  1098

seq1  TGTGG-ATTTTTTAACACCCCATT-ACATG-TCAGCTGGC-ATGATCATT  1136
      ||||| |||||||||||||||||| ||||| ||||||||| |||||||||
seq2  TGTGGAATTTTTTAACACCCCATTAACATGTTCAGCTGGCAATGATCATT  1148

seq1  -ATGT-AGGCCTTATTAATGCAGA  1158
       |||| ||||||||||||||||||
seq2  AATGTAAGGCCTTATTAATGCAGA  1172


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