BAC Information

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BAC

Clone NameB6Ng01-183M10
Chromosome6 (Build37)
Map Location 57,478,578 - 57,479,656
singlet/doubletsinglet
Overlap genePpm1k
Upstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822
Downstream geneHerc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183M10.bB6Ng01-183M10.g
ACCGA009317GA009318
length1,0751,182
definitionB6Ng01-183M10.b B6Ng01-183M10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccttagaaattttgatgagaatggaggtaggtaaggagaatgat
aactaacactaaggatgtttgaaaaagttataaagacttcctactacata
tacatacaaatataatgtcctctgtgtggctcagggagaggaagagggag
aggagggagagagagaaggacagaaaccctttgcagaagataatactccc
tccagaagctataggaagccaaatgaaaagcccaatgctggaatgtcttt
tctagttattggtcaggggtgtcccagaaatgacttaaacaatacaggct
aacatcattgctctcagttgcccaccagaaccatatggaaagaccccact
gctgaaaccaccatgtagtttgttcacagagactgctttgtaaatttcaa
tctctataccacagcttagtgcagctctcaaagatcgctggaggtaggca
tctttttgtttggactgttactcatgcagaaattcacaacccatccaagg
gaagagaataattatttgtagagtactcaaaacaaaagtggtacattata
ctacacctctcctcacaagggtcaggagtcagctatagtagctgtgggtc
ataactgctttggggagttcagcgaccctttcatcaggggttgccaaaga
ctgtgggaaacacattatttacagttatgattcataacagcaaaattgca
gttatcaagtagcaacaaaaaaaaacccacaattttatggttggggtcac
cacaacatgaggacctgcattaggaacactgaaaaccactgctctaagaa
aatggagcagaaagatgctaagacctgtcaactgaggatgtgtgatggga
aacagtgtcttctgaacatgacaccattactgcagtaggaaactcagagc
agatgtgggttgcctacacaagaccatctgagtcagcattcaaggatgaa
tgggggttcactcataggtacttcccaactcacccctgagtgctatgtac
agctgatggagaggagagttagcttttctttatggaatacttttaggggt
ttttttgttggttgttggtttatgg
gaattccatatggagcttgcttcatatatggcaagatagtcactgggcaa
gaaactgcttcaactgcagacaacatgctgtccaaaatggacaaataaga
agcagaaaagtcaactgctaagctttgtcaagacaaggtgagcagtcttt
cataattcttgcttcaaagaagaatttatcagatattctgggcctaaagg
ctgaagaaggatacgccaacattatagagaaatttgtgagactatccagg
cagccagctttctctgacatttctataattttggaagcttccggcctgta
ttacatgcctactcatttaatatttattccttctcaagtctctgattggg
ttgaagactatatcgttacaatcttataattaagttactctctaataagt
acacaaattcatgaaaattaaataggtgataaaataatcaaaaaagatat
tgagaaagaaaaattttaaaattctagagataaacaaagataaaaacaca
acacctgacatctgaacacattaaatggagtcctcagaggaaaataaaat
aaatagaaacaactaactaatacaaggtatcaactaatctaagtcctagt
tgtttgagaaaaataaacaaaatcaacagaccctgtctcaactaactaaa
ataaagagatgatccaaaataacacaatcaaaaatgaatagagacattac
aactgatgcaaaagaaattcagaacattataaggaaatatctgtccatca
ttaaactgataaaaaaaaacctaaaagaaatacatgaatttctaagttga
atcactaactacagcagtaagtcaagaaggcatttcctctattagtgagg
gataacaattagaaaataagaataaataaaattagccctgtttgagtatg
atacaatatgtataaaagataccaaaaacttgatcaggaacttctggact
tcagaaaagtggcatatagagaggaaacttacaaaatcatcgacctttct
atagcctgagtacaggagtagcacggttcaacccccaagacccagaaact
caccaggtcactgagagaacactctacagcatattgctgatccagtccct
cttcgagtgccacacactgcctatgatatggctagatcaggcataatgca
ccaactcccagaacactcctagaaataggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57478578_57479656
seq2: B6Ng01-183M10.b_45_1119

seq1  GAATTCCCTTAGAAATTTTGATGAGAATGGAGGTAGGTAAGGAGAATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTAGAAATTTTGATGAGAATGGAGGTAGGTAAGGAGAATGAT  50

seq1  AACTAACACTAAGGATGTTTGAAAAAGTTATAAAGACTTCCTACTACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACACTAAGGATGTTTGAAAAAGTTATAAAGACTTCCTACTACATA  100

seq1  TACATACAAATATAATGTCCTCTGTGTGGCTCAGGGAGAGGAAGAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACAAATATAATGTCCTCTGTGTGGCTCAGGGAGAGGAAGAGGGAG  150

seq1  AGGAGGGAGAGAGAGAAGGACAGAAACCCTTTGCAGAAGATAATACTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGAGAGAGAAGGACAGAAACCCTTTGCAGAAGATAATACTCCC  200

seq1  TCCAGAAGCTATAGGAAGCCAAATGAAAAGCCCAATGCTGGAATGTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGCTATAGGAAGCCAAATGAAAAGCCCAATGCTGGAATGTCTTT  250

seq1  TCTAGTTATTGGTCAGGGGTGTCCCAGAAATGACTTAAACAATACAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTATTGGTCAGGGGTGTCCCAGAAATGACTTAAACAATACAGGCT  300

seq1  AACATCATTGCTCTCAGTTGCCCACCAGAACCATATGGAAAGACCCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATTGCTCTCAGTTGCCCACCAGAACCATATGGAAAGACCCCACT  350

seq1  GCTGAAACCACCATGTAGTTTGTTCACAGAGACTGCTTTGTAAATTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACCACCATGTAGTTTGTTCACAGAGACTGCTTTGTAAATTTCAA  400

seq1  TCTCTATACCACAGCTTAGTGCAGCTCTCAAAGATCGCTGGAGGTAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATACCACAGCTTAGTGCAGCTCTCAAAGATCGCTGGAGGTAGGCA  450

seq1  TCTTTTTGTTTGGACTGTTACTCATGCAGAAATTCACAACCCATCCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTTTGGACTGTTACTCATGCAGAAATTCACAACCCATCCAAGG  500

seq1  GAAGAGAATAATTATTTGTAGAGTACTCAAAACAAAAGTGGTACATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAATAATTATTTGTAGAGTACTCAAAACAAAAGTGGTACATTATA  550

seq1  CTACACCTCTCCTCACAAGGGTCAGGAGTCAGCTATAGTAGCTGTGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTCTCCTCACAAGGGTCAGGAGTCAGCTATAGTAGCTGTGGGTC  600

seq1  ATAACTGCTTTGGGGAGTTCAGCGACCCTTTCATCAGGGGTTGCCAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCTTTGGGGAGTTCAGCGACCCTTTCATCAGGGGTTGCCAAAGA  650

seq1  CTGTGGGAAACACATTATTTACAGTTATGATTCATAACAGCAAAATTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAAACACATTATTTACAGTTATGATTCATAACAGCAAAATTGCA  700

seq1  GTTATCAAGTAGCAACAAAAAAAAACCCACAATTTTATGGTTGGGGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAAGTAGCAACAAAAAAAAACCCACAATTTTATGGTTGGGGTCAC  750

seq1  CACAACATGAGGACCTGCATTAGGAACACTGAAAACCACTGCTCTAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATGAGGACCTGCATTAGGAACACTGAAAACCACTGCTCTAAGAA  800

seq1  AATGGAGCAGAAAGATGCTAAGACCTGTCAACTGAGGATGTGTGATGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCAGAAAGATGCTAAGACCTGTCAACTGAGGATGTGTGATGGGA  850

seq1  AACAGTGTCTTCTGAACATGACACCATTACTGCAGTAGGAAACTCAGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTCTTCTGAACATGACACCATTACTGCAGTAGGAAACTCAGAGC  900

seq1  AGATGT-GGTTGCCTACACAAGACCATCTGAGTCAGCATTCAAGGATGAA  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGGTTGCCTACACAAGACCATCTGAGTCAGCATTCAAGGATGAA  950

seq1  TGGGGGTCCACTCATAGGTACTTTCCCAACTCACCCCTGAGGTGCTATGT  999
      ||||||| ||||||||||||| |||||||||||||||||| |||||||||
seq2  TGGGGGTTCACTCATAGGTAC-TTCCCAACTCACCCCTGA-GTGCTATGT  998

seq1  ACAGCTGATGGAGAGGGAGAGTTAGCTTTTCTTTATGGATAACTTTTAGG  1049
      |||||||||||||| ||||||||||||||||||||||||  |||||||||
seq2  ACAGCTGATGGAGA-GGAGAGTTAGCTTTTCTTTATGGAATACTTTTAGG  1047

seq1  GGTTTTTTTGTTTGGTTGGTTGGTTTTTGG  1079
      |||||||||| |||||| |||||||| |||
seq2  GGTTTTTTTG-TTGGTT-GTTGGTTTATGG  1075