BAC Information

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BAC

Clone NameB6Ng01-183N12
Chromosome6 (Build37)
Map Location 8,298,498 - 8,418,010
singlet/doubletdoublet
Overlap geneLOC100036521, LOC667028
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3
Downstream geneA430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183N12.bB6Ng01-183N12.g
ACCGA009367GA009368
length1,1751,164
definitionB6Ng01-183N12.b B6Ng01-183N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,416,841 - 8,418,010)(8,298,498 - 8,299,660)
sequence
gaattcttgttccttaaaaaaaaaaaaaaaaagacatttttggcaagcaa
atgcaaatgaagccgactgtctgcgcttttgatcctgactgtgtaaacac
aggcttataactaggtagtttcatgtttatgttggtggagtctctaaagt
catgcttacagactggggaacaatgcaacattgaacaaagcacaaacaca
gccttagtttttccctcccaaggcccttgacctcaggaccgtgtgtcaag
tcctttggtgtccctgtattttatgaagcaggttattgtaaaacaggaaa
ataaatatatccagatatagtctttgtatgtctataatgctgaacgcgta
tttatttatatggggtttgtctgttatgaaaagtccttcttttgagacaa
ttagaagctgtcaacaatctgtgtcgtagtttttcacctccttttcagtc
attatcactgtttatcagcatggctttaacatcacagagagttcaccggg
attccgtaggtgttttaagattcattatcatcaccattattactacaaat
tgcatcatttacttagcaccaacaatctgccgaagaaagcaagttggccc
tttttcaagtgggtaagaaatagaactcacacataaaaggaatgagctgc
agacaagggcgggcagtggcggggagatgacttactgagccgcttgggct
taggacgggtataggagtgacttccagaacaaacacttcgcaaaaatcct
tttctttctcaccccaatgtgaaccgaagaaagagaagttactaattttg
tttgtttgcaaagtcttttgacattggaaattctctcaagtttgtctgag
tcttccaagatggagtgtgaattctcgaatccccactctacctacccagc
cccagctagcagaagaagaccatctagtttccctgagtgggtggacaagg
gttacagcctgatgccagccagctgactactaatattattatatattata
ttataagcaatgcattgcttttctgatcagaactattactgccagggatc
gaggtcgtaccttcaattttactagacactacccttaatctttctctccc
ctttgctgaaatataaccttattattattaatttacctaggatttacaag
gacagtcctcatgtaacctatggct

gaattctttcaagcttattggctcagcacataagtatctgaactgttgaa
aataaacaccctccagcaaaccacagaaatgagtattcttttcatattta
gtatctttgggatttttttccttggactacacttactaattgttagtcaa
ggaactaactgtcatgcatatgaaaatgctggagtctatggtactttggg
gcatgcttttatgttggagtcacattagaacccagacatagtagccgtga
ctgatgggctaggacatggggttggatggaaaagcactgcaaataagcag
caaaagctacttgcccatttttctcccaggatatatacacgttaatccaa
tcaattaaaaatatatattgacacaagttactgtttctcccaggcatgca
cagtagcatactatttgtttcttaaatctgcagtccagcagtttatatta
ggaaataaaaattttattgtttgacattgaagtttgtctgattaataagc
taatattacctcaaatttcaaactttcttataaaaaaaaaaaaaccatga
gatttcatgcacctcagaaatagtataccaggtacaagtctagagggcac
ttgatgttacccttgtaataaaagaattccagagccttctaatgtctatg
tctataactacttcttgttgaattattatcctgaatgttgcatgtgctgg
cttgattgaacatgcagccttctttaggaaatcaataggttctccagttt
ttggttttggttttgttttctcctgatactgtgactggctagcactggga
ctaaacacagttcttcacttaaacacaaaggtattgttgctctaaaaatt
agccccatattttattctccaacaactgtgcctttgggtcattttgtata
agatgtggatgggttcgtgcctaagtcacagtgctcgtttatctgaagac
tgtaggatctcctgccatggttccagctgcagatctagatgttggtgaca
ctgggtgagctcagcagagccctctaccttcctcagtgaagtttcattct
actcatctgtaagccttccagcttgggaaggcagacccctcaacaggcca
gtcttttgcaattttctatcaggaatgcatgagggtgtgactcaaagaac
aatttctcactatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8416841_8418010
seq2: B6Ng01-183N12.b_47_1221 (reverse)

seq1  AGCC-TAGGTTTCATGAGG-CTGTCTTTGTAAATCATGAGTAAA-TAATA  47
      |||| |||||| ||||||| ||||| ||||||||| |  ||||| |||||
seq2  AGCCATAGGTTACATGAGGACTGTCCTTGTAAATCCTAGGTAAATTAATA  50

seq1  ATAATAAGTTTATATTTTACAGCAAAGGGG-GAGAAAGGATTAAGGTTAG  96
      |||||||| ||||||||  ||||||||||| |||||| |||||||| |||
seq2  ATAATAAGGTTATATTT--CAGCAAAGGGGAGAGAAA-GATTAAGGGTAG  97

seq1  TGTCTTTAGT-AAATTGAAGGTACGACCTTCGATCCCTGGCAGTAATAG-  144
      ||||  |||| ||||||||||||||||| |||||||||||||||||||| 
seq2  TGTC--TAGTAAAATTGAAGGTACGACC-TCGATCCCTGGCAGTAATAGT  144

seq1  TCTGATCAG-AAAGCAATGCA-TGCTTATATTATAATATAT-ATAATA-T  190
      ||||||||| ||||||||||| |||||||| |||||||||| |||||| |
seq2  TCTGATCAGAAAAGCAATGCATTGCTTATAATATAATATATAATAATATT  194

seq1  AGTAGTCAGCTGGCTGGCATCAGGCTGTTAACCCTTTGTCACCCACCTCA  240
      ||||||||||||||||||||||||||| ||||||||   |||||| ||||
seq2  AGTAGTCAGCTGGCTGGCATCAGGCTG-TAACCCTTGTCCACCCA-CTCA  242

seq1  GGG-AACTAGATGGTCTTC-TCTGCTAGCTGGGGCTGGGTAGGTAGAGTG  288
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGAAACTAGATGGTCTTCTTCTGCTAGCTGGGGCTGGGTAGGTAGAGTG  292

seq1  GGGATTCGAGAATTCACACTCCATCTTGGAAGACTCAGACAAACTTGAGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCGAGAATTCACACTCCATCTTGGAAGACTCAGACAAACTTGAGA  342

seq1  G-ATTTCCAATGTCAAAAGACTTTGCAAACAAACAAAATTAGTAACTTCT  387
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCAATGTCAAAAGACTTTGCAAACAAACAAAATTAGTAACTTCT  392

seq1  CTTTCTTCGGTTCACATTGGGGTGAGAAAGAAAAGGATTTTTGCGAAGTG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCGGTTCACATTGGGGTGAGAAAGAAAAGGATTTTTGCGAAGTG  442

seq1  TTTGTTCTGGAAGTCACTCCTATACCCGTCCTAAGCCCAAGCGGCTCAGT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGGAAGTCACTCCTATACCCGTCCTAAGCCCAAGCGGCTCAGT  492

seq1  AAGTCATCTCCCCGCCACTGCCCGCCCTTGTCTGCAGCTCATTCCTTTTA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCTCCCCGCCACTGCCCGCCCTTGTCTGCAGCTCATTCCTTTTA  542

seq1  TGTGTGAGTTCTATTTCTTACCCACTTGAAAAAGGGCCAACTTGCTTTCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTTCTATTTCTTACCCACTTGAAAAAGGGCCAACTTGCTTTCT  592

seq1  TCGGCAGATTGTTGGTGCTAAGTAAATGATGCAATTTGTAGTAATAATGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAGATTGTTGGTGCTAAGTAAATGATGCAATTTGTAGTAATAATGG  642

seq1  TGATGATAATGAATCTTAAAACACCTACGGAATCCCGGTGAACTCTCTGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAATGAATCTTAAAACACCTACGGAATCCCGGTGAACTCTCTGT  692

seq1  GATGTTAAAGCCATGCTGATAAACAGTGATAATGACTGAAAAGGAGGTGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAAAGCCATGCTGATAAACAGTGATAATGACTGAAAAGGAGGTGA  742

seq1  AAAACTACGACACAGATTGTTGACAGCTTCTAATTGTCTCAAAAGAAGGA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACGACACAGATTGTTGACAGCTTCTAATTGTCTCAAAAGAAGGA  792

seq1  CTTTTCATAACAGACAAACCCCATATAAATAAATACGCGTTCAGCATTAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATAACAGACAAACCCCATATAAATAAATACGCGTTCAGCATTAT  842

seq1  AGACATACAAAGACTATATCTGGATATATTTATTTTCCTGTTTTACAATA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACAAAGACTATATCTGGATATATTTATTTTCCTGTTTTACAATA  892

seq1  ACCTGCTTCATAAAATACAGGGACACCAAAGGACTTGACACACGGTCCTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTCATAAAATACAGGGACACCAAAGGACTTGACACACGGTCCTG  942

seq1  AGGTCAAGGGCCTTGGGAGGGAAAAACTAAGGCTGTGTTTGTGCTTTGTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGGGCCTTGGGAGGGAAAAACTAAGGCTGTGTTTGTGCTTTGTT  992

seq1  CAATGTTGCATTGTTCCCCAGTCTGTAAGCATGACTTTAGAGACTCCACC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTGCATTGTTCCCCAGTCTGTAAGCATGACTTTAGAGACTCCACC  1042

seq1  AACATAAACATGAAACTACCTAGTTATAAGCCTGTGTTTACACAGTCAGG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAACATGAAACTACCTAGTTATAAGCCTGTGTTTACACAGTCAGG  1092

seq1  ATCAAAAGCGCAGACAGTCGGCTTCATTTGCATTTGCTTGCCAAAAATGT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGCGCAGACAGTCGGCTTCATTTGCATTTGCTTGCCAAAAATGT  1142

seq1  CTTTTTTTTTTTTTTTTTAAGGAACAAGAATTC  1170
      |||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTTTAAGGAACAAGAATTC  1175


seq1: chr6_8298498_8299660
seq2: B6Ng01-183N12.g_69_1232

seq1  GAATTCTTTCAAGCTTATTGGCTCAGCACATAAGTATCTGAACTGTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAGCTTATTGGCTCAGCACATAAGTATCTGAACTGTTGAA  50

seq1  AATAAACACCCTCCAGCAAACCACAGAAATGAGTATTCTTTTCATATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACCCTCCAGCAAACCACAGAAATGAGTATTCTTTTCATATTTA  100

seq1  GTATCTTTGGGATTTTTTTCCTTGGACTACACTTACTAATTGTTAGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTGGGATTTTTTTCCTTGGACTACACTTACTAATTGTTAGTCAA  150

seq1  GGAACTAACTGTCATGCATATGAAAATGCTGGAGTCTATGGTACTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAACTGTCATGCATATGAAAATGCTGGAGTCTATGGTACTTTGGG  200

seq1  GCATGCTTTTATGTTGGAGTCACATTAGAACCCAGACATAGTAGCCGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTTTATGTTGGAGTCACATTAGAACCCAGACATAGTAGCCGTGA  250

seq1  CTGATGGGCTAGGACATGGGGTTGGATGGAAAAGCACTGCAAATAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGCTAGGACATGGGGTTGGATGGAAAAGCACTGCAAATAAGCAG  300

seq1  CAAAAGCTACTTGCCCATTTTTCTCCCAGGATATATACACGTTAATCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTACTTGCCCATTTTTCTCCCAGGATATATACACGTTAATCCAA  350

seq1  TCAATTAAAAATATATATTGACACAAGTTACTGTTTCTCCCAGGCATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAAAAATATATATTGACACAAGTTACTGTTTCTCCCAGGCATGCA  400

seq1  CAGTAGCATACTATTTGTTTCTTAAATCTGCAGTCCAGCAGTTTATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCATACTATTTGTTTCTTAAATCTGCAGTCCAGCAGTTTATATTA  450

seq1  GGAAATAAAAATTTTATTGTTTGACATTGAAGTTTGTCTGATTAATAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAAATTTTATTGTTTGACATTGAAGTTTGTCTGATTAATAAGC  500

seq1  TAATATTACCTCAAATTTCAAACTTTCTTATAAAAAAAAAAAAACCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTACCTCAAATTTCAAACTTTCTTATAAAAAAAAAAAAACCATGA  550

seq1  GATTTCATGCACCTCAGAAATAGTATACCAGGTACAAGTCTAGAGGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATGCACCTCAGAAATAGTATACCAGGTACAAGTCTAGAGGGCAC  600

seq1  TTGATGTTACCCTTGTAATAAAAGAATTCCAGAGCCTTCTAATGTCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTACCCTTGTAATAAAAGAATTCCAGAGCCTTCTAATGTCTATG  650

seq1  TCTATAACTACTTCTTGTTGAATTATTATCCTGAATGTTGCATGTGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACTACTTCTTGTTGAATTATTATCCTGAATGTTGCATGTGCTGG  700

seq1  CTTGATTGAACATGCAGCCTTCTTTAGGAAATCAATAGGTTCTCCAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGAACATGCAGCCTTCTTTAGGAAATCAATAGGTTCTCCAGTTT  750

seq1  TTGGTTTTGGTTTTGTTTTCTCCTGATACTGTGACTGGCTAGCACTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGGTTTTGTTTTCTCCTGATACTGTGACTGGCTAGCACTGGGA  800

seq1  CTAAACACAGTTCTTCACTTAAACACAAAGGTATTGTTGCTCTAAAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACACAGTTCTTCACTTAAACACAAAGGTATTGTTGCTCTAAAAATT  850

seq1  AGCCCCATATTTTATTCTCCAACAACTGTGCCTTT-GGTCA-TTTGTATA  898
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  AGCCCCATATTTTATTCTCCAACAACTGTGCCTTTGGGTCATTTTGTATA  900

seq1  AGATGTGGAT-GGTTCGTG-CTAAGTCACAGTGCTCGTTTATCTG-AGAC  945
      |||||||||| |||||||| ||||||||||||||||||||||||| ||||
seq2  AGATGTGGATGGGTTCGTGCCTAAGTCACAGTGCTCGTTTATCTGAAGAC  950

seq1  TGTAAGA--TCCTGCCATGG-TCCAGCTGCAGATCTAGATGTTGGTGACA  992
      |||| ||  ||||||||||| |||||||||||||||||||||||||||||
seq2  TGTAGGATCTCCTGCCATGGTTCCAGCTGCAGATCTAGATGTTGGTGACA  1000

seq1  CT-GGTGAGCTCAGCAGAAGCCCTC-ACCTTCTCCAGTGAGGTTTCCATC  1040
      || |||||||||||||| ||||||| ||||||  |||||| |||| ||| 
seq2  CTGGGTGAGCTCAGCAG-AGCCCTCTACCTTCCTCAGTGAAGTTT-CATT  1048

seq1  CTACTCATTCCTGT-AGCC-TCCAGCCTGGGGAAAGGCAGA-CCCTCAAA  1087
      ||||||||  |||| |||| |||||| ||||  |||||||| ||||||| 
seq2  CTACTCAT--CTGTAAGCCTTCCAGCTTGGG--AAGGCAGACCCCTCAA-  1093

seq1  ACAAGCCCAGTCTTTTGAAATTTTTCTACCCAGGAGATGCCATGAGGGTG  1137
         || ||||||||||| || |||||||  ||||| ||| ||||||||||
seq2  --CAGGCCAGTCTTTTGCAA-TTTTCTA-TCAGGA-ATG-CATGAGGGTG  1137

seq1  TGGCCCCAAAGACAATTTCT-ACTATG  1163
      || | | ||  ||||||||| ||||||
seq2  TGACTCAAAGAACAATTTCTCACTATG  1164


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