BAC Information

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BAC

Clone NameB6Ng01-184D01
Chromosome6 (Build37)
Map Location 30,262,784 - 30,429,118
singlet/doubletdoublet
Overlap geneZc3hc1, 2410127E18Rik
Upstream geneBC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h
Downstream gene2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184D01.bB6Ng01-184D01.g
ACCGA009627GA009628
length179449
definitionB6Ng01-184D01.b B6Ng01-184D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,428,940 - 30,429,118)(30,262,784 - 30,263,238)
sequence
gaattccaagacaaccagggccacactgaaagacacagtctcaataaata
agtcctgcctccaaaacaaagtgagtattctaaaatcagtctgacttcaa
agagccacttgacagaatggactaatctggagggcaaagcagcggggttt
gtgtgtgtgtggtttattctggggggggg
actctatagaccaggctggcctcaaactcagaaatctgcctgcctctgcc
tccaccaatgaatgggattaaaattgtgcaccaccactgcccggcccctg
actatttttattcacacctatagaccaccagcaagccgatacccttacct
atatattcatcaatcccaagttatccccaacatctttctgttgcaggata
tttgatcactctgtgaaccctgagactgtgttgtttactgggggggaaaa
aaaactgtttctagttgtggtgtggcttagccttattacacacctttaat
gccaaataatggaggtacaattagttatagaaagaaacacccatgtttga
aagtaatagactaagtggaagagaaagtgacaatacatatcaaaaaacca
aaccccacccccaggccttttaaagatagagaaacattttatagaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30428940_30429118
seq2: B6Ng01-184D01.b_41_219 (reverse)

seq1  CCCCCCCCCAGAATAAACCACACACACACAAACCCCGCTGCTTTGCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCAGAATAAACCACACACACACAAACCCCGCTGCTTTGCCCTC  50

seq1  CAGATTAGTCCATTCTGTCAAGTGGCTCTTTGAAGTCAGACTGATTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAGTCCATTCTGTCAAGTGGCTCTTTGAAGTCAGACTGATTTTAG  100

seq1  AATACTCACTTTGTTTTGGAGGCAGGACTTATTTATTGAGACTGTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCACTTTGTTTTGGAGGCAGGACTTATTTATTGAGACTGTGTCTT  150

seq1  TCAGTGTGGCCCTGGTTGTCTTGGAATTC  179
      |||||||||||||||||||||||||||||
seq2  TCAGTGTGGCCCTGGTTGTCTTGGAATTC  179

seq1: chr6_30262784_30263238
seq2: B6Ng01-184D01.g_69_523

seq1  GAATTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCCACCAAGGACTGGGATTAAAATTGTGCACCACCACTGCCCGG  100
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCACCAATGAATGGGATTAAAATTGTGCACCACCACTGCCCGG  100

seq1  CCCCTGACTATTTTTATTCACACCTATAGACCACCAGCAAGCCGATACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGACTATTTTTATTCACACCTATAGACCACCAGCAAGCCGATACCC  150

seq1  TTACCTATATATTCATCAATCCCAAGTTATCCCCAACATCTTTCTGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATATATTCATCAATCCCAAGTTATCCCCAACATCTTTCTGTTGC  200

seq1  AGGATATTTGATCACTCTGTGAACCCTGAGACTGTGTTGTTTACTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTTGATCACTCTGTGAACCCTGAGACTGTGTTGTTTACTGGGGG  250

seq1  GGAAAAAAAACTGTTTCTAGTTGTGGTGTGGCTTAGCCTTAGTACACACC  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAAAAAAAACTGTTTCTAGTTGTGGTGTGGCTTAGCCTTATTACACACC  300

seq1  TTTAATGCCAAATAATGGAGGTACAATTAGTTATAGAAAGAAACACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCCAAATAATGGAGGTACAATTAGTTATAGAAAGAAACACCCAT  350

seq1  GTTTGAAAGTAATAGACTAAGTGGTAGAGAAAGTGACAAAACAAAACAAA  400
      |||||||||||||||||||||||| |||||||||||||| ||| | ||||
seq2  GTTTGAAAGTAATAGACTAAGTGGAAGAGAAAGTGACAATACATATCAAA  400

seq1  AAACCAAACCCCACCCCCAGGCCCCCAAAAGAGAGAGAAACATTTTATAG  450
      |||||||||||||||||||||||    ||||| |||||||||||||||||
seq2  AAACCAAACCCCACCCCCAGGCCTTTTAAAGATAGAGAAACATTTTATAG  450

seq1  AATAG  455
      |||||
seq2  AATAG  455