BAC Information

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BAC

Clone NameB6Ng01-184F09
Chromosome6 (Build37)
Map Location 53,860,940 - 53,862,085
singlet/doubletsinglet
Overlap geneCpvl
Upstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik
Downstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184F09.bB6Ng01-184F09.g
ACCGA009739GA009740
length1,1511,159
definitionB6Ng01-184F09.b B6Ng01-184F09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaccgaatggtccagtccttttgaacatctgcagcatcattttt
tgaaacctctgacccttctcacaccatctttgcaaagtcatctgacagag
ttgcctctttgtagcagttgtctttcaatgccactggatttaaataagta
cctctcagttaaccagccaccagctctctgactccacaaaacaaagtctg
ttgtctattatctttccaaactaccctcactctgccacacttgggttatc
ccagagttgcccctaaacaacatactttttgaaaaaagtttttacttttc
ttgttgccctaaacaatatactttaaaattttttcttagcatgaaatatg
ttcaaacaacaaagtaaatctctagcaaaatggcagtgttcacccaacag
agcaacttaaccaaactgttccccggtaaatctatcattggatggcttga
tgcaatgagagagtaagattgcacgctggcttgcagcatcttgggcattt
catgatacttaagtttagagactggccatgaaaagatgctactacctaca
ttcaggcgaaatcgtactatttcacagctatgtgcgttctctgccagttg
tttgctggcatgcttaaggattaaaaaacagttgcaaggcctgaagatgc
ccctcacacaaggcattcgttcagttcatcagagtctttgcttggcttgt
gaccagcacaggtaagccaacgtcacaagggccagcaggaggaagtggct
tctgcgcctacactatttttatgtgactctaaagggacagttgcttgtcg
gtgataggctacgctgaaggtataaggaaaggatgcccctgtcccgtgat
gagtgtccttctcctccataatggttcactggaagttaccttatcgttcc
tgaaatttctcagggaatagtactgacattgccttcattgtcttcagaag
gcatagaaaaaggggtttcccatcagtttaaggtcaataaagtctgcttc
cctttcccccaaaccccctctggctcaaagaatgcctggatccaaccaca
ctgaagaacctgggctgattaatgtttttcttggtaggctctgtcattca
tcagacgcaagacctctggcccaggtaccaatttaaacatgggtgtcact
a
gaattcttcctagcactttcaggctggttgccattaaggtttcttctagc
tgcagatgtgaacagaaagacttaatacttccgggtctggagtctgctgg
ccttctgaccggagtcaggcattcatctcacctggatctccaacagaagg
actttctcatcctataatcttcaattacttagaagaaatctctcctttca
ctccatatacacactaatatcatacatacatacacaatatacataatata
cacacacacacacacacacacacacacacatatatacatccatacatatt
cctatctacatgcatgcccctgttggctttctattgctgtgacaaaacag
cttccttatacaacccaggaccacttgcccaaggatggcactgacccatg
gaactggactaggtgatctcacattctcattttttaaaaaaaagccccac
agacttgtctataagtaggaggcattttaccaattaaggattcctttccc
cagatgaccataatttgtgacaagctgataaaaaaaaaaccctaaccaac
acaattaacctcttgtcatcttggcacacaaaaccatgatcttttttttt
tcgttttccccaagggatcatgttaatagcaacatcaccatctaagacat
actatgtggtcctcccttttccctgggggctcttagccaccagcccacga
ggacaaaagggggcagagtcaaagaacagggtttggtcagcctggaaata
cagtggaaatagttttttggggaaatggatagggatttctggagtgagta
atttatgactgggctacagctgagggtacctcatttgcatagagaagcat
tccagaaattccagggtgcttgctggagaggttcttatcaggagaaagga
agccaatcctataatctcacccaggctacaggacattccacaggtagagg
gtcaggctccccagacagtcagagaggagagcactactttaaagaaagga
gtccccattttccactagctcagctgctagacatgtagactgcaccctta
ttagcgaaccaccatacttgagtccatagtattaaggattcaacctaacg
ctttaaattcagtctttactatggctacttgcaaacggatctagcagcca
accaacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53860940_53862085
seq2: B6Ng01-184F09.b_44_1194

seq1  GAATTCCACCGAATGGTCCAGTCCTTTTGAACATCTGCAGCATCATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCGAATGGTCCAGTCCTTTTGAACATCTGCAGCATCATTTTT  50

seq1  TGAAACCTCTGACCCTTCTCACACCATCTTTGCAAAGTCATCTGACAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTCTGACCCTTCTCACACCATCTTTGCAAAGTCATCTGACAGAG  100

seq1  TTGCCTCTTTGTAGCAGTTGTCTTTCAATGCCACTGGATTTAAATAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTTTGTAGCAGTTGTCTTTCAATGCCACTGGATTTAAATAAGTA  150

seq1  CCTCTCAGTTAACCAGCCACCAGCTCTCTGACTCCACAAAACAAAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGTTAACCAGCCACCAGCTCTCTGACTCCACAAAACAAAGTCTG  200

seq1  TTGTCTATTATCTTTCCAAACTACCCTCACTCTGCCACACTTGGGTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATTATCTTTCCAAACTACCCTCACTCTGCCACACTTGGGTTATC  250

seq1  CCAGAGTTGCCCCTAAACAACATACTTTTTGAAAAAAGTTTTTACTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTGCCCCTAAACAACATACTTTTTGAAAAAAGTTTTTACTTTTC  300

seq1  TTGTTGCCCTAAACAATATACTTTAAAATTTTTTCTTAGCATGAAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCCTAAACAATATACTTTAAAATTTTTTCTTAGCATGAAATATG  350

seq1  TTCAAACAACAAAGTAAATCTCTAGCAAAATGGCAGTGTTCACCCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAACAAAGTAAATCTCTAGCAAAATGGCAGTGTTCACCCAACAG  400

seq1  AGCAACTTAACCAAACTGTTCCCCGGTAAATCTATCATTGGATGGCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTTAACCAAACTGTTCCCCGGTAAATCTATCATTGGATGGCTTGA  450

seq1  TGCAATGAGAGAGTAAGATTGCACGCTGGCTTGCAGCATCTTGGGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAGAGAGTAAGATTGCACGCTGGCTTGCAGCATCTTGGGCATTT  500

seq1  CATGATACTTAAGTTTAGAGACTGGCCATGAAAAGATGCTACTACCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATACTTAAGTTTAGAGACTGGCCATGAAAAGATGCTACTACCTACA  550

seq1  TTCAGGCGAAATCGTACTATTTCACAGCTATGTGCGTTCTCTGCCAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCGAAATCGTACTATTTCACAGCTATGTGCGTTCTCTGCCAGTTG  600

seq1  TTTGCTGGCATGCTTAAGGATTAAAAAACAGTTGCAAGGCCTGAAGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGCATGCTTAAGGATTAAAAAACAGTTGCAAGGCCTGAAGATGC  650

seq1  CCCTCACACAAGGCATTCGTTCAGTTCATCAGAGTCTTTGCTTGGCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACACAAGGCATTCGTTCAGTTCATCAGAGTCTTTGCTTGGCTTGT  700

seq1  GACCAGCACAGGTAAGCCAACGTCACAAGGGCCAGCAGGAGGAAGTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCACAGGTAAGCCAACGTCACAAGGGCCAGCAGGAGGAAGTGGCT  750

seq1  TCTGCGCCTACACTATTTTTATGTGACTCTAAAGGGACAGTTGCTTGTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGCCTACACTATTTTTATGTGACTCTAAAGGGACAGTTGCTTGTCG  800

seq1  GTGATAGGCTACGCTGAAGGTATAAGGAAAGGATGCCCCTGTCCCGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGGCTACGCTGAAGGTATAAGGAAAGGATGCCCCTGTCCCGTGAT  850

seq1  GAGTGTCCTTCTCCTCCATAATGGTTCACTGGAAGTTACCTTATCGTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCCTTCTCCTCCATAATGGTTCACTGGAAGTTACCTTATCGTTCC  900

seq1  TGAAATTTCTCAGGGAATAGTACTGACATTGCCTTCATTGTCTTCAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTCTCAGGGAATAGTACTGACATTGCCTTCATTGTCTTCAGAAG  950

seq1  GCATAGAAAAAGGGG-TTCCCATCAGTTTAAGGTCAATAAAGTCTGCTTC  999
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCATAGAAAAAGGGGTTTCCCATCAGTTTAAGGTCAATAAAGTCTGCTTC  1000

seq1  CCTTTCCCCC-AACCCCCTCTGGCTCAAAG-ATGCCTGGATCCAACCAAC  1047
      |||||||||| ||||||||||||||||||| |||||||||||||||||  
seq2  CCTTTCCCCCAAACCCCCTCTGGCTCAAAGAATGCCTGGATCCAACCA--  1048

seq1  AACTGAAGAA-CTGGGCTGATTTAAATGTTTTTCTTGGTAGGCTCTGTCA  1096
       ||||||||| |||||||||||  ||||||||||||||||||||||||||
seq2  CACTGAAGAACCTGGGCTGATT--AATGTTTTTCTTGGTAGGCTCTGTCA  1096

seq1  TTCATCAGACGC-AGACTCCTGGCCCCAAGTACCA---TTAACAT--GTG  1140
      |||||||||||| ||||  |||| |||| ||||||   | |||||  |||
seq2  TTCATCAGACGCAAGACCTCTGG-CCCAGGTACCAATTTAAACATGGGTG  1145

seq1  TCACTA  1146
      ||||||
seq2  TCACTA  1151