BAC Information

Click to search

BAC

Clone NameB6Ng01-184J21
Chromosome6 (Build37)
Map Location 106,803,017 - 106,935,106
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn
Downstream genePpia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184J21.bB6Ng01-184J21.g
ACCGA009947GA009948
length1,1801,070
definitionB6Ng01-184J21.b B6Ng01-184J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,933,917 - 106,935,106)(106,803,017 - 106,804,087)
sequence
gaattcagactaagatggtcattcattatggcctgtgataagagatgggg
tagagcaataactcccaatagccagactgtgaacttagtagccaggagac
tataggtttcttttagtctctacatcagctgagtcttcctcttctctttt
tgtgtcaccttgtttgccttctatgctttgacagaggacgttgattcctt
tgaaatacctcactcattttctataatctagaagtttctatagagctatt
atggttattttgatggcattaattatgtagacatgtaggtgctgtttctg
gtacttctggggaggtttacctgggaatagaagagctatcctgcctgtgg
gtggtatcatcccgtgggctgggtcacattctaaatagaaaaatataatg
aaaagcataggatttttagaattaggttttctacactggccgaaaacaac
ttggggtagaaggagcttatcagctttcaactcccagattaccatccatc
acagagagacttcagggaaggagcatcaggcaggagcctggaggttgaaa
ctgatacagaggcgatgcagagacactacttacttttacttactgctgtg
gtccccatggcttgctcatcctgctctctgatagctcctagggctatctc
cccaaaggaggccccacccacatcaatcaccaaccaagaaaattccccac
agatgtctaaagcccgtataatggagataatttcccacataagccttcct
cctccagatgactccaactggggttgacaaaagagacaaaaaacaaaatt
gaaaaatcagaaccgaaagtccaagcatactcactgagcacttgcaatcc
cctttctctgcttcctgtggtgtaccaggcaccaccaggtctcgctgaca
tcacccctgggctggtagtccttggagcgatgagaaaacaggcttagcaa
gcaaccataaaaagtaaaaagtaagtaaagcaatccttcccagtgccttg
tgtgtactgtcagccttctctgccatgatgactgaatctccctgaactgt
gagccaagtatgtaccaggtaggttgtctttttgccaggattgatcacag
ttgcacgaaaggtaaaccacatccttgttaaggttcctgagtctgcctga
acgcttggttctgaacctcatgaccttatt

gaattcaatcaggtaccatcatttctcctgccaatggactcatggctact
gaatatttgcatggttattttagaacaatgggaaatgatggcagagaaaa
tttcatcatgatgccacttgcatgagactttaaaatttataacctaggct
gaagttttattttctcgagaaatgctgacttgtttctttgctcaccaagc
tattgtttcatttcaccacgcgactccaaggaacttagtggcaattttgc
attcaagtatagtttttctattcctcaaacacagagaaaagacaacctga
tactccaacctcacctaaaacaaactgggaaagaacaggaagaatgcctc
tagaagtgcagagagggcttgtgatgagagcagggagggactagaaaacc
cactttgattttggaagtttctctaagcgttctgaagacacaccttccaa
ccttcgaggcaaattttcacccttcgactttctttcttctttcaataact
agtatccctggacatcaagctgagctttagattcttaagctgtgtattag
acaaattctgctgggaaaatattttaaagaatgtttttgggctggagaga
tcgctcagtggttaagagcacctactgttcttccgaaggtcctgagatca
aatcccagcaaccacgtggtagctcacaactatctataatgagatctgat
gctctgttctggtgtgtctgaagacagttacagtgtacttagatataata
ataaatctttaggccggactgagcagggctggagtgagtggggctgacag
gagtaagcagaggtcctgaattcaaattcccagcaaccacatgatggctc
acaaccatcagtacagctacagtgtactcatatatatatataatacatct
ttttaaaaaagaatattttctattggcacatatagacttttgtttctgtc
cttagttcctttgaaaaatattataaatattttatttagcatttacatta
tatggggtgtatcagttactcagacttgataaaattatataacatatata
tatatgcatatggtatatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106933917_106935106
seq2: B6Ng01-184J21.b_45_1224 (reverse)

seq1  AATAAGGTGCCATTGAAGTTCAGAACAAAAGCTGTCAGGCAGACTCAGGG  50
      ||||||||  || ||| |||||||||  ||||  ||||||||||||||| 
seq2  AATAAGGT--CA-TGAGGTTCAGAAC-CAAGCGTTCAGGCAGACTCAGGA  46

seq1  ACCTAAACAAGATTGTGTGTTACTTTTCCTTCCACTGTGATCAAATCCTG  100
      |||| ||||||  ||||  |||| |||| | | ||||||||| |||||||
seq2  ACCTTAACAAGGATGTGGTTTACCTTTCGTGCAACTGTGATC-AATCCTG  95

seq1  GGCAAAAGACAACCTAACTGGTACATACTTTGGCTCACAGTTCAGGGAGA  150
      |  ||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  GCAAAAAGACAACCTACCTGGTACATAC-TTGGCTCACAGTTCAGGGAGA  144

seq1  TTCAGTCCATCATGGCAGAGAAGGCTTGACAGTACACACAAGGCACTGGG  200
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCAGT-CATCATGGCAGAGAAGGC-TGACAGTACACACAAGGCACTGGG  192

seq1  AAGGATTGCTTTTACTTACTTTTTACTTTTTATGGTTTGCTTGCTAAGCC  250
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  AAGGATTGC-TTTACTTACTTTTTACTTTTTATGG-TTGCTTGCTAAGCC  240

seq1  TGTTTTCTCATCGCTCCAAGGACTACCAGCCCAGGGGTGATGTCAGCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCATCGCTCCAAGGACTACCAGCCCAGGGGTGATGTCAGCGAG  290

seq1  ACCTGGTGGTGCCTGGTACACCACAGGAAGCAGAGAAAGGGGATTGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGGTGCCTGGTACACCACAGGAAGCAGAGAAAGGGGATTGCAAG  340

seq1  TGCTCAGTGAGTATGCTTGGACTTTCGGTTCTGATTTTTCAATTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGAGTATGCTTGGACTTTCGGTTCTGATTTTTCAATTTTGTTT  390

seq1  TTTGTCTCTTTTGTCAACCCCAGTTGGAGTCATCTGGAGGAGGAAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTTTTGTCAACCCCAGTTGGAGTCATCTGGAGGAGGAAGGCTT  440

seq1  ATGTGGGAAATTATCTCCATTATACGGGCTTTAGACATCTGTGGGGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAAATTATCTCCATTATACGGGCTTTAGACATCTGTGGGGAATT  490

seq1  TTCTTGGTTGGTGATTGATGTGGGTGGGGCCTCCTTTGGGGAGATAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTTGGTGATTGATGTGGGTGGGGCCTCCTTTGGGGAGATAGCCC  540

seq1  TAGGAGCTATCAGAGAGCAGGATGAGCAAGCCATGGGGACCACAGCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTATCAGAGAGCAGGATGAGCAAGCCATGGGGACCACAGCAGTA  590

seq1  AGTAAAAGTAAGTAGTGTCTCTGCATCGCCTCTGTATCAGTTTCAACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGTAAGTAGTGTCTCTGCATCGCCTCTGTATCAGTTTCAACCTC  640

seq1  CAGGCTCCTGCCTGATGCTCCTTCCCTGAAGTCTCTCTGTGATGGATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCTGCCTGATGCTCCTTCCCTGAAGTCTCTCTGTGATGGATGGT  690

seq1  AATCTGGGAGTTGAAAGCTGATAAGCTCCTTCTACCCCAAGTTGTTTTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGAGTTGAAAGCTGATAAGCTCCTTCTACCCCAAGTTGTTTTCG  740

seq1  GCCAGTGTAGAAAACCTAATTCTAAAAATCCTATGCTTTTCATTATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGTAGAAAACCTAATTCTAAAAATCCTATGCTTTTCATTATATTT  790

seq1  TTCTATTTAGAATGTGACCCAGCCCACGGGATGATACCACCCACAGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTAGAATGTGACCCAGCCCACGGGATGATACCACCCACAGGCAG  840

seq1  GATAGCTCTTCTATTCCCAGGTAAACCTCCCCAGAAGTACCAGAAACAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTCTTCTATTCCCAGGTAAACCTCCCCAGAAGTACCAGAAACAGC  890

seq1  ACCTACATGTCTACATAATTAATGCCATCAAAATAACCATAATAGCTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATGTCTACATAATTAATGCCATCAAAATAACCATAATAGCTCTA  940

seq1  TAGAAACTTCTAGATTATAGAAAATGAGTGAGGTATTTCAAAGGAATCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTTCTAGATTATAGAAAATGAGTGAGGTATTTCAAAGGAATCAA  990

seq1  CGTCCTCTGTCAAAGCATAGAAGGCAAACAAGGTGACACAAAAAGAGAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTCTGTCAAAGCATAGAAGGCAAACAAGGTGACACAAAAAGAGAAG  1040

seq1  AGGAAGACTCAGCTGATGTAGAGACTAAAAGAAACCTATAGTCTCCTGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACTCAGCTGATGTAGAGACTAAAAGAAACCTATAGTCTCCTGGC  1090

seq1  TACTAAGTTCACAGTCTGGCTATTGGGAGTTATTGCTCTACCCCATCTCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTTCACAGTCTGGCTATTGGGAGTTATTGCTCTACCCCATCTCT  1140

seq1  TATCACAGGCCATAATGAATGACCATCTTAGTCTGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGGCCATAATGAATGACCATCTTAGTCTGAATTC  1180


seq1: chr6_106803017_106804087
seq2: B6Ng01-184J21.g_65_1134

seq1  GAATTCAATCAGGTACCATCATTTCTCCTGCCAATGGACTCATGGCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAGGTACCATCATTTCTCCTGCCAATGGACTCATGGCTACT  50

seq1  GAATATTTGCATGGTTATTTTAGAACAATGGGAAATGATGGCAGAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTGCATGGTTATTTTAGAACAATGGGAAATGATGGCAGAGAAAA  100

seq1  TTTCATCATGATGCCACTTGCATGAGACTTTAAAATTTATAACCTAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCATGATGCCACTTGCATGAGACTTTAAAATTTATAACCTAGGCT  150

seq1  GAAGTTTTATTTTCTCGAGAAATGCTGACTTGTTTCTTTGCTCACCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTATTTTCTCGAGAAATGCTGACTTGTTTCTTTGCTCACCAAGC  200

seq1  TATTGTTTCATTTCACCACGCGACTCCAAGGAACTTAGTGGCAATTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTCATTTCACCACGCGACTCCAAGGAACTTAGTGGCAATTTTGC  250

seq1  ATTCAAGTATAGTTTTTCTATTCCTCAAACACAGAGAAAAGACAACCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTATAGTTTTTCTATTCCTCAAACACAGAGAAAAGACAACCTGA  300

seq1  TACTCCAACCTCACCTAAAACAAACTGGGAAAGAACAGGAAGAATGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCAACCTCACCTAAAACAAACTGGGAAAGAACAGGAAGAATGCCTC  350

seq1  TAGAAGTGCAGAGAGGGCTTGTGATGAGAGCAGGGAGGGACTAGAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGCAGAGAGGGCTTGTGATGAGAGCAGGGAGGGACTAGAAAACC  400

seq1  CACTTTGATTTTGGAAGTTTCTCTAAGCGTTCTGAAGACACACCTTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGATTTTGGAAGTTTCTCTAAGCGTTCTGAAGACACACCTTCCAA  450

seq1  CCTTCGAGGCAAATTTTCACCCTTCGACTTTCTTTCTTCTTTCAATAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGAGGCAAATTTTCACCCTTCGACTTTCTTTCTTCTTTCAATAACT  500

seq1  AGTATCCCTGGACATCAAGCTGAGCTTTAGATTCTTAAGCTGTGTATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCCTGGACATCAAGCTGAGCTTTAGATTCTTAAGCTGTGTATTAG  550

seq1  ACAAATTCTGCTGGGAAAATATTTTAAAGAATGTTTTTGGGCTGGAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCTGCTGGGAAAATATTTTAAAGAATGTTTTTGGGCTGGAGAGA  600

seq1  TCGCTCAGTGGTTAAGAGCACCTACTGTTCTTCCGAAGGTCCTGAGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCAGTGGTTAAGAGCACCTACTGTTCTTCCGAAGGTCCTGAGATCA  650

seq1  AATCCCAGCAACCACGTGGTAGCTCACAACTATCTATAATGAGATCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCAACCACGTGGTAGCTCACAACTATCTATAATGAGATCTGAT  700

seq1  GCTCTGTTCTGGTGTGTCTGAAGACAGTTACAGTGTACTTAGATATAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTCTGGTGTGTCTGAAGACAGTTACAGTGTACTTAGATATAATA  750

seq1  ATAAATCTTTAGGCCGGACTGAGCAGGGCTGGAGTGAGTGGGGCTGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTTAGGCCGGACTGAGCAGGGCTGGAGTGAGTGGGGCTGACAG  800

seq1  GAGTAAGCAGAGGTCCTGAATTCAAATTCCCAGCAACCACATGATGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGCAGAGGTCCTGAATTCAAATTCCCAGCAACCACATGATGGCTC  850

seq1  ACAACCATCAGTACAGCTACAGTGTACTCATATATATATATAATACATC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACAACCATCAGTACAGCTACAGTGTACTCATATATATATATAATACATCT  900

seq1  TTTTAAAAAAGAATATTTTCTATTGGCACATATAGACTTTTGTTTCTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAGAATATTTTCTATTGGCACATATAGACTTTTGTTTCTGTC  950

seq1  CTTAGTTCCTTTGAAAAAATAATTATAAAATATTTATTTAGCATTTACAT  999
      ||||||||||||||||||   ||||||||   ||||||||||||||||||
seq2  CTTAGTTCCTTTGAAAAA--TATTATAAATATTTTATTTAGCATTTACAT  998

seq1  TATATGGGGTGTTATCAGTAACTCAGACTTGATTAAAAATATAT-ACATA  1048
      ||||||||||| ||||||| |||||||||||| ||||| ||||| |||||
seq2  TATATGGGGTG-TATCAGTTACTCAGACTTGA-TAAAATTATATAACATA  1046

seq1  TATATATATGCATAT-GTATATGT  1071
      ||||||||||||||| ||||||||
seq2  TATATATATGCATATGGTATATGT  1070


| Home | SequenceCutter | Blast | Download |