BAC Information

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BAC

Clone NameB6Ng01-185D18
Chromosome6 (Build37)
Map Location 15,048,612 - 15,049,713
singlet/doubletsinglet
Overlap geneFoxp2
Upstream geneLOC100040513, LOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185D18.bB6Ng01-185D18.g
ACCGA010401GA010402
length1,2051,123
definitionB6Ng01-185D18.b B6Ng01-185D18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattctc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagactttgaagtttttatcat
acagatctttcactttcctttagttagagtcacgccgagatatttttaat
attatttgtgacttttgagaaggtgtttgtttccctaatttctttctcag
cttgtttattcttcgttgtagaagaaatgccattgactgttttgagttaa
ttttatatcagctactttcacggaagctgtttattcagcttagagttctc
ctggtgaaattttttagtcaccttatataatactattcatatcatctgcc
aaagtgattatttgaactcctccttccaatttgatattcccctctgtaat
ctcct

gaattcatatgtacaaaacccatgccatcttcagaggacagcatctatgt
tctcatgaacataactaagtggcttaataaatactattaatcaaagacta
aaaggaggctataatgttaggaaaaatatgtgactgtggagggtgattca
tgataggaactggaggagtggatatgatcaagacccatggtatacatctt
gagatttaaaaaaatatatatttttgaagaagtgtaagtctgccctaacc
tacctatgagaggctacttgaacaaaaacagaaaaaaaaattacagctgt
aactcaattttattctgtgatttcatcaattaaatggttgaataataggg
aactaatgaaaacactgaataattagaaacaagataatggaaagtttaat
attatctgaaccacttactagttgtgtgggttttggtagtacttaaaatt
tatgatgttcagagttttcatctgtaaagtagatgctcatgaaagttaaa
ttggttaaatggggaaatgcaccaaaaatagtgccacagcacttgccttg
ctttaacagcacttctttccttccgttctctcttaaatctcaagaggatt
tcctataaaattcccagaggaaatatttgaacattgaagcaccacagttt
ggagtaaaggcagcataaagacagcactggtgatctgcactgtatctgag
tcatgttaggaagaatgtggtatgcatgtggatggcataaaggctgtcag
ggttttcgttcatcgtttggataattttccatccaaaataagagcataaa
agaccaatgaaagaagaaatgaagaccataacaattataaaataaagaag
gcagcattaatctgattctattatagtcatagcagaatggagagcattat
tagaaacagagttgggaaactattaattcattcaaatattctgtagatag
ggacacttaatgttgcaacacattgtacttggaatactattcttattgac
ttaatagtcaaagaatgtcttaaaaggtctttcaaaataaaattgggcta
ctgcccattattgtggaaacttattgacaggatttagagttgctcgagaa
aagcgtattatcttgtgattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15048612_15049713
seq2: B6Ng01-185D18.g_65_1187 (reverse)

seq1  AAAAATCAC-AGAT-ATAC-CCTTTCTCGA-CAACTCTAA--TCTGTCAA  44
      ||||||||| |||| |||| | |||||||| |||||||||   |||||||
seq2  AAAAATCACAAGATAATACGCTTTTCTCGAGCAACTCTAAATCCTGTCAA  50

seq1  TA--GTTCCACAATAATGGGCAGTAGCCC-ATTTTATTTTG-AAGACC-T  89
      ||   |||||||||||||||||||||||| ||||||||||| |||||| |
seq2  TAAGTTTCCACAATAATGGGCAGTAGCCCAATTTTATTTTGAAAGACCTT  100

seq1  TTAAGACA-TCTTTGACTATTAAGTC-ATAAG-ATAGTATT-CAAGT-CC  134
      |||||||| ||||||||||||||||| ||||| |||||||| ||||| | 
seq2  TTAAGACATTCTTTGACTATTAAGTCAATAAGAATAGTATTCCAAGTACA  150

seq1  ATGTGTTGC-ACA-TAAGTGTCCCTATCTACAGAATATTTTGATGAA-TA  181
      ||||||||| ||| ||||||||||||||||||||||||||  ||||| ||
seq2  ATGTGTTGCAACATTAAGTGTCCCTATCTACAGAATATTTGAATGAATTA  200

seq1  ATAGTTTCCCAACTCTGTTTCTAATAATGCTCTCCATTCTGCTATGACTA  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCCCAACTCTGTTTCTAATAATGCTCTCCATTCTGCTATGACTA  250

seq1  T-ATAGAATCAGATTAATGCTGCCTTCTTTATTTTATAATTGTTATGGTC  280
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAATCAGATTAATGCTGCCTTCTTTATTTTATAATTGTTATGGTC  300

seq1  TTCATTTCTTCTTTCATTGGTCTTTTATGCTCTTATTTTGGATGGAAAAT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTTCTTTCATTGGTCTTTTATGCTCTTATTTTGGATGGAAAAT  350

seq1  TATCCAAACGATGAACG-AAACCCTGACAGCCTTTATGCCATCCACATGC  379
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATCCAAACGATGAACGAAAACCCTGACAGCCTTTATGCCATCCACATGC  400

seq1  ATACCACATTCTTCCTAACATGACTCAGATACAGTGCAGATCACCAGTGC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACATTCTTCCTAACATGACTCAGATACAGTGCAGATCACCAGTGC  450

seq1  TGTCTTTATGCTGCCTTTACTCCAAACTGTGGTGCTTCAATGTTCAAATA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATGCTGCCTTTACTCCAAACTGTGGTGCTTCAATGTTCAAATA  500

seq1  TTTCCTCTGGGAATTTTATAGGAAATCCTCTTGAGATTTAAGAGAGAACG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGGGAATTTTATAGGAAATCCTCTTGAGATTTAAGAGAGAACG  550

seq1  GAAGGAAAGAAGTGCTGTTAAAGCAAGGCAAGTGCTGTGGCACTATTTTT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGAAGTGCTGTTAAAGCAAGGCAAGTGCTGTGGCACTATTTTT  600

seq1  GGTGCATTTCCCCATTTAACCAATTTAACTTTCATGAGCATCTACTTTAC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATTTCCCCATTTAACCAATTTAACTTTCATGAGCATCTACTTTAC  650

seq1  AGATGAAAACTCTGAACATCATAAATTTTAAGTACTACCAAAACCCACAC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAACTCTGAACATCATAAATTTTAAGTACTACCAAAACCCACAC  700

seq1  AACTAGTAAGTGGTTCAGATAATATTAAACTTTCCATTATCTTGTTTCTA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTAAGTGGTTCAGATAATATTAAACTTTCCATTATCTTGTTTCTA  750

seq1  ATTATTCAGTGTTTTCATTAGTTCCCTATTATTCAACCATTTAATTGATG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAGTGTTTTCATTAGTTCCCTATTATTCAACCATTTAATTGATG  800

seq1  AAATCACAGAATAAAATTGAGTTACAGCTGTAATTTTTTTTTCTGTTTTT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAGAATAAAATTGAGTTACAGCTGTAATTTTTTTTTCTGTTTTT  850

seq1  GTTCAAGTAGCCTCTCATAGGTAGGTTAGGGCAGACTTACACTTCTTCAA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTAGCCTCTCATAGGTAGGTTAGGGCAGACTTACACTTCTTCAA  900

seq1  AAATATATATTTTTTTAAATCTCAAGATGTATACCATGGGTCTTGATCAT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATATTTTTTTAAATCTCAAGATGTATACCATGGGTCTTGATCAT  950

seq1  ATCCACTCCTCCAGTTCCTATCATGAATCACCCTCCACAGTCACATATTT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCCTCCAGTTCCTATCATGAATCACCCTCCACAGTCACATATTT  1000

seq1  TTCCTAACATTATAGCCTCCTTTTAGTCTTTGATTAATAGTATTTATTAA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACATTATAGCCTCCTTTTAGTCTTTGATTAATAGTATTTATTAA  1050

seq1  GCCACTTAGTTATGTTCATGAGAACATAGATGCTGTCCTCTGAAGATGGC  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTAGTTATGTTCATGAGAACATAGATGCTGTCCTCTGAAGATGGC  1100

seq1  ATGGGTTTTGTACATATGAATTC  1102
      |||||||||||||||||||||||
seq2  ATGGGTTTTGTACATATGAATTC  1123


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