BAC Information

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BAC

Clone NameB6Ng01-185F16
Chromosome6 (Build37)
Map Location 71,310,496 - 71,442,634
singlet/doubletdoublet
Overlap geneCd8a, Rmnd5a, LOC100042863
Upstream geneIgk, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853
Downstream geneRnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185F16.bB6Ng01-185F16.g
ACCGA010491GA010492
length1,081602
definitionB6Ng01-185F16.b B6Ng01-185F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,310,496 - 71,311,581)(71,442,033 - 71,442,634)
sequence
gaattcctgtgccatcggggagggggaactctgtatcaacctaagtttta
aaccctgccaaggctagcccagagacctgatggaccttctagctcctcta
cctggctgttgtcatcctgtcttatctctccagccagtgggctctgtatt
tgttagccaagatccctaccttccacctgctagctaggctcttacccttt
cttagctccacattccagtctgtcaaggcattgtttcttttgattctgtc
tctggtagccaattgcacctctcacatggtttggagccctttggctgggc
tcctgtccacctaagagaagctgtgcacttcgttatatcatcacctgttc
tcttatggctgtagtctttgctcctgtgctcctgagcacagaagaccgcc
aatcagcacagaatcagccagctgcaaacaaccacatctctgcatgctgc
tcttaagaagctgcatagagggcaatgaggagactcaaggtcgtggctct
gcctctagagttgcaggggcacccccaaaggaccctgcattaaaaatgca
aaagctaaactgggaaagatcgagtagagagaacttcccaagaaagcccc
tccacaccaaccaaaggaggatggaccacggggaccaggggaagaaagag
gagcagcccctgatctttccctatcttcattctcctcactgaagagaatt
tctaactttcatctctaacttcctccctctgcactccccctgccccctcc
ccccaagaaattctccatgtgtggttccagacttcaggagttagacccat
gggctctggtggggagtggaaacaaggtgcacctcccccaaggttcccat
cgctgcacagctcggctctcacggaacacagactgctcagatcccttcag
aaatctgactcgggcttggctcttaccagtaatgaagtcacaatttgtag
gatgaagaaaggaaacatttatggtcgaactgaggttgctatctgcctcc
ttaggccagaggccaaatgaagtgtcggatcaaagtacaagttccaattg
acttttaaagttcaatttggatcatctgttc
gaattccaggtgaaatgttagccagcaaggaaaagcatgaacaaccctaa
accaggggtgaaatttttagggagagagtgtgaccctcaatcagggagca
aatgagccatggaaaacaaagaatggatcataaaatgtagacaaaggata
gtacccctttataacgcagttaacaaaggcatctcggtgtacagctagtg
gaggagctaggaaggaagaagcctaggagcagggtgggcaggaatgtaca
gcttcagacttacagaacagtgtggtggttttccagggcagcagaccacg
tggagactgtattaaactgttcctgctgacagacttggctctgtaatttc
agcattcttgatttcacagtatagcactgttatatggtggcattgctagt
caagtctaaacacataaatgatatgccttgcctcgaaggaatgcatttta
gtaataatagactctgtcaatacacagaggcaataacagaaaagaagaac
aggtagggaaagctgggtggatgagctgaggatggagccagacaggctag
agtttaaaagttaaaaaaatcaaatcatgagagggaagaggagagagagg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71310496_71311581
seq2: B6Ng01-185F16.b_43_1122

seq1  GAATTCCTGTGCCATCGGGGAGGGGGAACTCTGTATCAACCTAAGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGCCATCGGGGAGGGGGAACTCTGTATCAACCTAAGTTTTA  50

seq1  AACCCTGCCAAGGCTAGCCCAGAGACCTGATGGACCTTCTAGCTCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGCCAAGGCTAGCCCAGAGACCTGATGGACCTTCTAGCTCCTCTA  100

seq1  CCTGGCTGTTGTCATCCTGTCTTATCTCTCCAGCCAGTGGGCTCTGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTTGTCATCCTGTCTTATCTCTCCAGCCAGTGGGCTCTGTATT  150

seq1  TGTTAGCCAAGATCCCTACCTTCCACCTGCTAGCTAGGCTCTTACCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCAAGATCCCTACCTTCCACCTGCTAGCTAGGCTCTTACCCTTT  200

seq1  CTTAGCTCCACATTCCAGTCTGTCAAGGCATTGTTTCTTTTGATTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCCACATTCCAGTCTGTCAAGGCATTGTTTCTTTTGATTCTGTC  250

seq1  TCTGGTAGCCAATTGCACCTCTCACATGGTTTGGAGCCCTTTGGCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAGCCAATTGCACCTCTCACATGGTTTGGAGCCCTTTGGCTGGGC  300

seq1  TCCTGTCCACCTAAGAGAAGCTGTGCACTTCGTTATATCATCACCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCACCTAAGAGAAGCTGTGCACTTCGTTATATCATCACCTGTTC  350

seq1  TCTTATGGCTGTAGTCTTTGCTCCTGTGCTCCTGAGCACAGAAGACCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGCTGTAGTCTTTGCTCCTGTGCTCCTGAGCACAGAAGACCGCC  400

seq1  AATCAGCACAGAATCAGCCAGCTGCAAACAACCACATCTCTGCATGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCACAGAATCAGCCAGCTGCAAACAACCACATCTCTGCATGCTGC  450

seq1  TCTTAAGAAGCTGCATAGAGGGCAATGAGGAGACTCAAGGTCGTGGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGAAGCTGCATAGAGGGCAATGAGGAGACTCAAGGTCGTGGCTCT  500

seq1  GCCTCTAGAGTTGCAGGGGCACCCCCAAAGGACCCTGCATTAAAAATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAGAGTTGCAGGGGCACCCCCAAAGGACCCTGCATTAAAAATGCA  550

seq1  AAAGCTAAACTGGGAAAGATCGAGTAGAGAGAACTTCCCAAGAAAGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAACTGGGAAAGATCGAGTAGAGAGAACTTCCCAAGAAAGCCCC  600

seq1  TCCACACCAACCAAAGGAGGATGGACCACGGGGACCAGGGGAAGAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCAACCAAAGGAGGATGGACCACGGGGACCAGGGGAAGAAAGAG  650

seq1  GAGCAGCCCCTGATCTTTCCCTATCTTCATTCTCCTCACTGAAGAGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCCCTGATCTTTCCCTATCTTCATTCTCCTCACTGAAGAGAATT  700

seq1  TCTAACTTTCATCTCTAACTTCCTCCCTCTGCACTCCCCCTGCCCCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTTCATCTCTAACTTCCTCCCTCTGCACTCCCCCTGCCCCCTCC  750

seq1  CCCCAAGAAATTCTCCATGTGTGGTTCCAGACTTCAGGAGTTAGACCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGAAATTCTCCATGTGTGGTTCCAGACTTCAGGAGTTAGACCCAT  800

seq1  GGGCTCTGGTGGGGAGTGGAAACAAGGTGCACCTCCCCC-AGGTTCCCAT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGCTCTGGTGGGGAGTGGAAACAAGGTGCACCTCCCCCAAGGTTCCCAT  850

seq1  CGCTGCACAGCTCGGCTCTCACGGAACACAGACTGCTCAGATCCCTTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCACAGCTCGGCTCTCACGGAACACAGACTGCTCAGATCCCTTCAG  900

seq1  AAATCTGACTCGGGCTTGGCTCTTACCAGTAATGAGGTCACAATTTGTAG  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATCTGACTCGGGCTTGGCTCTTACCAGTAATGAAGTCACAATTTGTAG  950

seq1  AATGAAGAAAGGAAACATTTATGGTCGAACTGAGGTTGCTATCTGCCTCC  999
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAAAGGAAACATTTATGGTCGAACTGAGGTTGCTATCTGCCTCC  1000

seq1  TT-GGCCAGTGCCCAAATGAAGGTGTTGGGATTAAAAAGTACAAAGTTTC  1048
      || |||||| | ||||||||| ||| | ||||   ||||||| ||||| |
seq2  TTAGGCCAGAGGCCAAATGAA-GTG-TCGGAT--CAAAGTAC-AAGTTCC  1045

seq1  CATTGACTTTTAAAAGTTTCAATTTGGAGTAATCTGTT  1086
       |||||||||||||   ||||||||||| | |||||||
seq2  AATTGACTTTTAAA--GTTCAATTTGGA-TCATCTGTT  1080

seq1: chr6_71442033_71442634
seq2: B6Ng01-185F16.g_71_672 (reverse)

seq1  TCCCTCTCTCTCCTCTTCCCTCTCATGATTTGATTTTTTTAACTTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTCTCCTCTTCCCTCTCATGATTTGATTTTTTTAACTTTTAAA  50

seq1  CTCTAGCCTGTCTGGCTCCATCCTCAGCTCATCCACCCAGCTTTCCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCTGTCTGGCTCCATCCTCAGCTCATCCACCCAGCTTTCCCTAC  100

seq1  CTGTTCTTCTTTTCTGTTATTGCCTCTGTGTATTGACAGAGTCTATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCTTTTCTGTTATTGCCTCTGTGTATTGACAGAGTCTATTATT  150

seq1  ACTAAAATGCATTCCTTCGAGGCAAGGCATATCATTTATGTGTTTAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATGCATTCCTTCGAGGCAAGGCATATCATTTATGTGTTTAGACT  200

seq1  TGACTAGCAATGCCACCATATAACAGTGCTATACTGTGAAATCAAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGCAATGCCACCATATAACAGTGCTATACTGTGAAATCAAGAATG  250

seq1  CTGAAATTACAGAGCCAAGTCTGTCAGCAGGAACAGTTTAATACAGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTACAGAGCCAAGTCTGTCAGCAGGAACAGTTTAATACAGTCTC  300

seq1  CACGTGGTCTGCTGCCCTGGAAAACCACCACACTGTTCTGTAAGTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGTCTGCTGCCCTGGAAAACCACCACACTGTTCTGTAAGTCTGAA  350

seq1  GCTGTACATTCCTGCCCACCCTGCTCCTAGGCTTCTTCCTTCCTAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACATTCCTGCCCACCCTGCTCCTAGGCTTCTTCCTTCCTAGCTCC  400

seq1  TCCACTAGCTGTACACCGAGATGCCTTTGTTAACTGCGTTATAAAGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAGCTGTACACCGAGATGCCTTTGTTAACTGCGTTATAAAGGGGT  450

seq1  ACTATCCTTTGTCTACATTTTATGATCCATTCTTTGTTTTCCATGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTTTGTCTACATTTTATGATCCATTCTTTGTTTTCCATGGCTCA  500

seq1  TTTGCTCCCTGATTGAGGGTCACACTCTCTCCCTAAAAATTTCACCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCCTGATTGAGGGTCACACTCTCTCCCTAAAAATTTCACCCCTG  550

seq1  GTTTAGGGTTGTTCATGCTTTTCCTTGCTGGCTAACATTTCACCTGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGTTGTTCATGCTTTTCCTTGCTGGCTAACATTTCACCTGGAAT  600

seq1  TC  602
      ||
seq2  TC  602