BAC Information

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BAC

Clone NameB6Ng01-185P20
Chromosome6 (Build37)
Map Location 14,516,082 - 14,665,787
singlet/doubletdoublet
Overlap genePpp1r3a
Upstream geneTmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
Downstream geneFoxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185P20.bB6Ng01-185P20.g
ACCGA010952GA010953
length8271,130
definitionB6Ng01-185P20.b B6Ng01-185P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,516,082 - 14,516,905)(14,664,675 - 14,665,787)
sequence
gaattccatcattcccaccactgtatgtgagctaaattaacacaaatcat
ttcaagtcctcatggatattatcaatctcaatcattcttgtttggagaga
aagatattaaggatatatttatattacctatatatgatctattcattatt
attatgttttgcagaaaactatttagattataggaatgttgccaaaatag
tatcatatagcagccattatgaggaataattcctttgtgatatatagaca
accttcaattgggttgcctgctgcttcctcatgaactgactcaggttaca
gaacagagtatcaaagaacctatattttcttctccttgtatctatctaaa
acaacaacagcaataaacaatgattcatatatttccatatgtgtgtgtgt
gcatatatatatatatatatatatatatatatatatatatatatgtaatt
acatacatacggaaatatatggaatattgttatttgcacatacatacaaa
gtgaatatgtatgccatacatattatatatatgtatgatatgccatatca
tatatagagagttatatcatgaactcctctttacatatatattttaatgt
acttttttcatacatattctttatattttttaaatgaactttttttcatc
tcaactaataatgctcacttcaaaaacaaatttttcaaaaaaaataccag
atatgataatcccctcttttagttagtgttagtccagtgctgactatgag
accctcaatgttggtttctgtgagtgaaatcccaagttagaatgtcagtc
tctttttctgaagatcatcgagcactt

gaattcctttaagcagtccttagaaattatctctaaaattgttgccctca
tatttttttgtcaggactaagttaagttggagttaaagttagcattccac
cagctctttatagcttagaggtttttcttaattctatgttttaagagttt
tagtcaacatagcttatctctgtaatgtaaaggacactattttatgagca
ccggtgccccaaacagaattcttcccttaaatgatcagcgtaactccctt
tccctcctctatttgatttctggtaacattaactcaccaaaggttctcat
gcatttgtaataaaacaggaacaagcttcaaaggattttaaacactattt
agttgtgtgtttctttgatgcaaagaagaaatactggattgaactgactt
ttcaaacattacttatagaactttaaataaaggtacaaggacacttgaaa
ggactgctctatgaggaggttgagtttgtcagtctcttttggtcacatct
ctatgatgaataaaaatgagtgttaggatgaacttgtagcctctgccgac
aaggacttggctatggaccatcttggtaaaggccatttttttttttttta
tccatagatgccagtttcacatctcaccacactttgactatgggtataat
gagggcatagcagagtaattaccaatgaggatctttacatatgccattct
tattttaaataagaaatatgatttaatcattgctatccttatctttctgg
ggttctcagtcttagacacggacctctaaaaactaactgagaagtttagc
aatgctatgtaatacaaaacaacagtctttttaagaactctgacatctag
aagctatcaacatcacaataaaattctcaaccagaataaaaatgactgag
tggtttattatccactcttcaacattttaaggaatgttggggtcagtaga
acctatattttcttggaggagcttctaatacgtgggataataaatttttt
cagggcctattctatagtcaaattatttggtcaccttattttgttcaaaa
caggacgttcttttaaccttcatcttacaccagtactctgggctaagtga
aaacatgtatggccagacccaactatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14516082_14516905
seq2: B6Ng01-185P20.b_47_873

seq1  GAATTCCATCATTCCCACCACTGTATGTGAGCTAAATTAACACAAATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCATTCCCACCACTGTATGTGAGCTAAATTAACACAAATCAT  50

seq1  TTCAAGTCCTCATGGATATTATCAATCTCAATCATTCTTGTTTGGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCCTCATGGATATTATCAATCTCAATCATTCTTGTTTGGAGAGA  100

seq1  AAGATATTAAGGATATATTTATATTACCTATATATGATCTATTCATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAAGGATATATTTATATTACCTATATATGATCTATTCATTATT  150

seq1  ATTATGTTTTGCAGAAAACTATTTAGATTATAGGAATGTTGCCAAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTTGCAGAAAACTATTTAGATTATAGGAATGTTGCCAAAATAG  200

seq1  TATCATATAGCAGCCATTATGAGGAATAATTCCTTTGTGATATATAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATAGCAGCCATTATGAGGAATAATTCCTTTGTGATATATAGACA  250

seq1  ACCTTCAATTGGGTTGCCTGCTGCTTCCTCATGAACTGACTCAGGTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAATTGGGTTGCCTGCTGCTTCCTCATGAACTGACTCAGGTTACA  300

seq1  GAACAGAGTATCAAAGAACCTATATTTTCTTCTCCTTGTATCTATCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGTATCAAAGAACCTATATTTTCTTCTCCTTGTATCTATCTAAA  350

seq1  ACAACAACAGCAATAAACAATGATTCATATATTTCCATATGTGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAGCAATAAACAATGATTCATATATTTCCATATGTGTGTGTGT  400

seq1  GCATATATATATATATATATATATATATATATATATATATATATGTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATATATATATATATATATATATATATATATATATATATGTAATT  450

seq1  TCATTAAAAC-CATATATATATGTATATATATATATACACATACATACAA  499
       |||  | ||  | ||||||  | ||||   ||| | |||||||||||||
seq2  ACATACATACGGAAATATAT-GGAATATTGTTATTTGCACATACATACAA  499

seq1  ATTGAATATGTATACCATACATATTATATATATGTATGATATGCCATATC  549
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTGAATATGTATGCCATACATATTATATATATGTATGATATGCCATATC  549

seq1  ATATATAGAGAGTTATATCATGAACTCCTCTTTACATATATATTTTAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGAGAGTTATATCATGAACTCCTCTTTACATATATATTTTAATG  599

seq1  TAC-TTTTTCATACATATTCTTTATA-TTTTTAAATGAAC-TTTTTTCAT  646
      ||| |||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TACTTTTTTCATACATATTCTTTATATTTTTTAAATGAACTTTTTTTCAT  649

seq1  CTCAGCTAATAATGCTCACTTCAAGAACAAAAGTTTCAAAAAAAAATACC  696
      |||| ||||||||||||||||||| ||||||  |||| ||||||||||||
seq2  CTCAACTAATAATGCTCACTTCAAAAACAAATTTTTC-AAAAAAAATACC  698

seq1  AGATATGATAATCCCCCTTTTTAGTTAGTTGTTGTCCAGGGCTGACTAAG  746
      ||||||||||||||||  |||||||||||  | |||||| |||||||| |
seq2  AGATATGATAATCCCCTCTTTTAGTTAGTGTTAGTCCAGTGCTGACTATG  748

seq1  AGACCCCCAATGTTGTTTTCTTTG-GTTAGATCCCCAAGTTAGAAGGTCA  795
      |||||| |||||||| ||||| || || | || |||||||||||| ||||
seq2  AGACCCTCAATGTTGGTTTCTGTGAGTGAAAT-CCCAAGTTAGAATGTCA  797

seq1  GTCTCTTTTGCTGAAGA-CACTGAGCACTT  824
      ||||||||| ||||||| ||  ||||||||
seq2  GTCTCTTTTTCTGAAGATCATCGAGCACTT  827


seq1: chr6_14664675_14665787
seq2: B6Ng01-185P20.g_69_1198 (reverse)

seq1  CCCCATA-TTTGGTCTGGCCATTTACAATGTTTTCACTTA-ACCAGAGTA  48
      ||||||| || ||||||||||  ||| |||||||||||||  ||||||||
seq2  CCCCATAGTTGGGTCTGGCCA--TAC-ATGTTTTCACTTAGCCCAGAGTA  47

seq1  CTGGTGTAAGATGA--GGTAAAAGAACGTCCTGTTTTG-ACAAAATA--G  93
      ||||||||||||||  | |||||||||||||||||||| ||||||||  |
seq2  CTGGTGTAAGATGAAGGTTAAAAGAACGTCCTGTTTTGAACAAAATAAGG  97

seq1  TGA-CAAAT-ATTTGACTATAG-ATAGGCCTTG-AAAAATTTATTAT-CC  138
      ||| ||||| |||||||||||| ||||||| || ||||||||||||| ||
seq2  TGACCAAATAATTTGACTATAGAATAGGCCCTGAAAAAATTTATTATCCC  147

seq1  ACGTATTAG-AGCTCCT-CAAGAAAATATA-GTTCTACTGA-CCCAACAT  184
      ||||||||| ||||||| |||||||||||| |||||||||| ||||||||
seq2  ACGTATTAGAAGCTCCTCCAAGAAAATATAGGTTCTACTGACCCCAACAT  197

seq1  TCCT--AAATGTTGAAGAGTGGAT-ATAAACCACTCAGTCA-TTTTATTC  230
      ||||  |||||||||||||||||| |||||||||||||||| ||||||||
seq2  TCCTTAAAATGTTGAAGAGTGGATAATAAACCACTCAGTCATTTTTATTC  247

seq1  TGGTTGAGAATTTTATTGTGATGTTGATAGCTTCTAGATGTCAGAGTTCT  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGAATTTTATTGTGATGTTGATAGCTTCTAGATGTCAGAGTTCT  297

seq1  TAAAAAGACTGTTGTTTTGTATTACATAGCATTGCTAAACTTCTCAGTTA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGACTGTTGTTTTGTATTACATAGCATTGCTAAACTTCTCAGTTA  347

seq1  GTTTTTAGAGGTCCGTGTCTAAGACTGAGAACCCCAGAAAGATAAGGATA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGAGGTCCGTGTCTAAGACTGAGAACCCCAGAAAGATAAGGATA  397

seq1  GCAATGATTAAATCATATTTCTTATTTAAAATAAGAATGGCATATGTAAA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGATTAAATCATATTTCTTATTTAAAATAAGAATGGCATATGTAAA  447

seq1  GATCCTCATTGGTAATTACTCTGCTATGCCCTCATTATACCCATAGTCAA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCATTGGTAATTACTCTGCTATGCCCTCATTATACCCATAGTCAA  497

seq1  AGTGTGGTGAGATGTGAAACTGGCATCTATGGATAAAAAAAAAAAAAATG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTGAGATGTGAAACTGGCATCTATGGATAAAAAAAAAAAAAATG  547

seq1  GCCTTTACCAAGATGGTCCATAGCCAAGTCCTTGTCGGCAGAGGCTACAA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACCAAGATGGTCCATAGCCAAGTCCTTGTCGGCAGAGGCTACAA  597

seq1  GTTCATCCTAACACTCATTTTTATTCATCATAGAGATGTGACCAAAAGAG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCCTAACACTCATTTTTATTCATCATAGAGATGTGACCAAAAGAG  647

seq1  ACTGACAAACTCAACCTCCTCATAGAGCAGTCCTTTCAAGTGTCCTTGTA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAAACTCAACCTCCTCATAGAGCAGTCCTTTCAAGTGTCCTTGTA  697

seq1  CCTTTATTTAAAGTTCTATAAGTAATGTTTGAAAAGTCAGTTCAATCCAG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTAAAGTTCTATAAGTAATGTTTGAAAAGTCAGTTCAATCCAG  747

seq1  TATTTCTTCTTTGCATCAAAGAAACACACAACTAAATAGTGTTTAAAATC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCTTTGCATCAAAGAAACACACAACTAAATAGTGTTTAAAATC  797

seq1  CTTTGAAGCTTGTTCCTGTTTTATTACAAATGCATGAGAACCTTTGGTGA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGCTTGTTCCTGTTTTATTACAAATGCATGAGAACCTTTGGTGA  847

seq1  GTTAATGTTACCAGAAATCAAATAGAGGAGGGAAAGGGAGTTACGCTGAT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTTACCAGAAATCAAATAGAGGAGGGAAAGGGAGTTACGCTGAT  897

seq1  CATTTAAGGGAAGAATTCTGTTTGGGGCACCGGTGCTCATAAAATAGTGT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGGGAAGAATTCTGTTTGGGGCACCGGTGCTCATAAAATAGTGT  947

seq1  CCTTTACATTACAGAGATAAGCTATGTTGACTAAAACTCTTAAAACATAG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACATTACAGAGATAAGCTATGTTGACTAAAACTCTTAAAACATAG  997

seq1  AATTAAGAAAAACCTCTAAGCTATAAAGAGCTGGTGGAATGCTAACTTTA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAAAACCTCTAAGCTATAAAGAGCTGGTGGAATGCTAACTTTA  1047

seq1  ACTCCAACTTAACTTAGTCCTGACAAAAAAATATGAGGGCAACAATTTTA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAACTTAACTTAGTCCTGACAAAAAAATATGAGGGCAACAATTTTA  1097

seq1  GAGATAATTTCTAAGGACTGCTTAAAGGAATTC  1113
      |||||||||||||||||||||||||||||||||
seq2  GAGATAATTTCTAAGGACTGCTTAAAGGAATTC  1130


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