BAC Information

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BAC

Clone NameB6Ng01-186K02
Chromosome6 (Build37)
Map Location 143,638,651 - 143,642,170
singlet/doubletdoublet
Overlap genenone
Upstream geneAbcc9, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream geneSox5, 4933425H06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186K02.bB6Ng01-186K02.g
ACCGA011419GA011420
length1,183652
definitionB6Ng01-186K02.b B6Ng01-186K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,638,651 - 143,639,829)(143,641,531 - 143,642,170)
sequence
gaattctgggaattgagtccagaagcccactgctacgatagcacggctgg
agttaagccatcctgatgatgactatgataagctatggagacaattctag
atgctcctttatccagagagcagcacagtgtggcactgcactgcacagca
tgacacttcgtggcccagcactgcacagtgcagtgtagagcagcacagca
cagctccacacggcactgcatgacactgcagcacagctctgcatggcact
gcacagcactgcatgacactgcatggcaacgcttgacaccgcacgacatg
ggacagtttactaggtactctcggtttcagccccagttgtttcctgactc
ctctgaactttgaacagaagctcgagtggccagttgttggtttccttcaa
ttctcagtgtatagaaccaaagctccaaggctgggtctctgaggagtgca
gggcccgggggtaatgacagctctgtctctcttgaggccctctaccactc
atggcttttctaggactcccaggctgaacctcacacactcacactctgtt
tcccatccttccaactccccctgctttaaagtccactccctttaaagttt
atttaactttcatttctttaacctgctttaatagccgaacagcaagctct
gttcttcaggaaagggaagatgttcttttctcttttagcagctgaacagc
caaaatcggttacagcatgtttgtttttcctcagtgcttcaggagcttct
aggcgtgtatccatcaaaacacctctacaatgtcaccttattagtgtctt
agtggaactgcaaagagaaccaagcccttgatagagtcaagccagatata
atcgccgatgttccttgcctggaggatgctcttacttacccccctgtagt
ccttgtaactttgcccagttcagacctgggagatctgcccagtgtctgct
gcaatcatacgtgggccgagaactgtggatttaaataatgttgctgttca
taagggaaactttagcaaaataatagcatgctggctgttgctgtgagctg
tgaacgtaagttaatagtagcattgttctgggaagaaattgaacttggta
cctcctctgagtctctcaagctaaggtttggcgattcattataaggtatt
ggggagctattaagggaagtcacagaaagggcc
acctgggttttaaagggcgggcttgacttacacaaacacattcccatggc
tagtgagggccaataagtacatctgcatactggcacaccattgttgctag
ttcccattgtcaacagaaaccagaggatgaaggcagtccctcctttgaga
cactttgatggtgctagggaatccaaatgtgctgccacagtggctgatgc
ccccggggactctgttctggtgattctgggattttctgtccctacatgag
gttgctggttagttttaactgtcaatttgatacaaccaagaaaaaaaaag
tgtcttgatgaaagaaaaagagtcttcatgaggaattttctagactgggt
tgtttggtgagtgtatctgtgaggggttgttttgattgttaattcaagtg
agaagacccagcctgaatgtgagcaccacagtttgtgagctggcctccaa
cactggagagggaaaaaagctagccaaatactaaggacacaggggtttga
atattccttccttccctcctctcctcctctccttctctccttctctcctt
ctctccttctctccttccttcctcccctcttccttccttcatcattcagt
catcatttattaattaatcatccattaattctttaattattcatcactca
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143638651_143639829
seq2: B6Ng01-186K02.b_42_1224

seq1  GAATTCTGGGAATTGAGTCCAGAAGCCCACTGCTACGATAGCACGGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAATTGAGTCCAGAAGCCCACTGCTACGATAGCACGGCTGG  50

seq1  AGTTAAGCCATCCTGATGATGACTATGATAAGCTATGGAGACAATTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGCCATCCTGATGATGACTATGATAAGCTATGGAGACAATTCTAG  100

seq1  ATGCTCCTTTATCCAGAGAGCAGCACAGTGTGGCACTGCACTGCACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTTTATCCAGAGAGCAGCACAGTGTGGCACTGCACTGCACAGCA  150

seq1  TGACACTTCGTGGCCCAGCACTGCACAGTGCAGTGTAGAGCAGCACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTCGTGGCCCAGCACTGCACAGTGCAGTGTAGAGCAGCACAGCA  200

seq1  CAGCTCCACACGGCACTGCATGACACTGCAGCACAGCTCTGCATGGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCACACGGCACTGCATGACACTGCAGCACAGCTCTGCATGGCACT  250

seq1  GCACAGCACTGCATGACACTGCATGGCAACGCTTGACACCGCACGACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCACTGCATGACACTGCATGGCAACGCTTGACACCGCACGACATG  300

seq1  GGACAGTTTACTAGGTACTCTCGGTTTCAGCCCCAGTTGTTTCCTGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTTACTAGGTACTCTCGGTTTCAGCCCCAGTTGTTTCCTGACTC  350

seq1  CTCTGAACTTTGAACAGAAGCTCGAGTGGCCAGTTGTTGGTTTCCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACTTTGAACAGAAGCTCGAGTGGCCAGTTGTTGGTTTCCTTCAA  400

seq1  TTCTCAGTGTATAGAACCAAAGCTCCAAGGCTGGGTCTCTGAGGAGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTGTATAGAACCAAAGCTCCAAGGCTGGGTCTCTGAGGAGTGCA  450

seq1  GGGCCCGGGGGTAATGACAGCTCTGTCTCTCTTGAGGCCCTCTACCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCGGGGGTAATGACAGCTCTGTCTCTCTTGAGGCCCTCTACCACTC  500

seq1  ATGGCTTTTCTAGGACTCCCAGGCTGAACCTCACACACTCACACTCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTTCTAGGACTCCCAGGCTGAACCTCACACACTCACACTCTGTT  550

seq1  TCCCATCCTTCCAACTCCCCCTGCTTTAAAGTCCACTCCCTTTAAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCTTCCAACTCCCCCTGCTTTAAAGTCCACTCCCTTTAAAGTTT  600

seq1  ATTTAACTTTCATTTCTTTAACCTGCTTTAATAGCCGAACAGCAAGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTTTCATTTCTTTAACCTGCTTTAATAGCCGAACAGCAAGCTCT  650

seq1  GTTCTTCAGGAAAGGGAAGATGTTCTTTTCTCTTTTAGCAGCTGAACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAGGAAAGGGAAGATGTTCTTTTCTCTTTTAGCAGCTGAACAGC  700

seq1  CAAAATCGGTTACAGCATGTTTGTTTTTCCTCAGTGCTTCAGGAGCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCGGTTACAGCATGTTTGTTTTTCCTCAGTGCTTCAGGAGCTTCT  750

seq1  AGGCGTGTATCCATCAAAACACCTCTACAATGTCACCTTATTAGTGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGTATCCATCAAAACACCTCTACAATGTCACCTTATTAGTGTCTT  800

seq1  AGTGGAACTGCAAAGAGAACCAAGCCCTTGATAGAGTCAAGCCAGATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACTGCAAAGAGAACCAAGCCCTTGATAGAGTCAAGCCAGATATA  850

seq1  ATCGCCGATGTTCCTTGCCTGGAGGATGCTCTTACTTACCCCCCTGTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCGATGTTCCTTGCCTGGAGGATGCTCTTACTTACCCCCCTGTAGT  900

seq1  CCTTGTAACTTTGCCCAGTTCAGACCT-GGAGATCTGCCCAGTGTCTGCT  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTTGTAACTTTGCCCAGTTCAGACCTGGGAGATCTGCCCAGTGTCTGCT  950

seq1  GCAATCATACGT-GGCCGAG-ACTGTGGATTTAAATAATGTTGCTGTTCA  997
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  GCAATCATACGTGGGCCGAGAACTGTGGATTTAAATAATGTTGCTGTTCA  1000

seq1  TAAGGGAA--CTTAGC-AAATAATAGCATGCTGGCTGTTGCTGTGAGCTG  1044
      ||||||||   ||||| |||||||||||||||||||||||||||||||||
seq2  TAAGGGAAACTTTAGCAAAATAATAGCATGCTGGCTGTTGCTGTGAGCTG  1050

seq1  TGAACGT-AGGTAATAGTAGCATTGTTCTGGGAAGAAATTTGAAACTTGG  1093
      ||||||| || |||||||||||||||||||||||||||||   |||||||
seq2  TGAACGTAAGTTAATAGTAGCATTGTTCTGGGAAGAAATT--GAACTTGG  1098

seq1  TA-CTCTCCTGAGTCTCTCAAGTTAAAGTTTGGGCAGATTCATTTATTAA  1142
      || |||  |||||||||||||| ||| ||||||   |||||| ||||  |
seq2  TACCTCCTCTGAGTCTCTCAAGCTAAGGTTTGG--CGATTCA-TTAT--A  1143

seq1  GGGGATTTGGGAGTTATTAAGGGA--GCACAG-AAGGGCC  1179
       || ||| ||||| ||||||||||   ||||| |||||||
seq2  AGGTATTGGGGAGCTATTAAGGGAAGTCACAGAAAGGGCC  1183

seq1: chr6_143641531_143642170
seq2: B6Ng01-186K02.g_11_651 (reverse)

seq1  ATGAGTGATGAATAATTAATGAATTAATGGATGATTAATTAATTAATGAT  50
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  ATGAGTGATGAATAATTAAAGAATTAATGGATGATTAATTAATAAATGAT  50

seq1  GAGTGAATGATGAAGGAAGGAAGAGGGGAGGAAGGAAGGAGAGAAGGAGA  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATGATGAAGGAAGGAAGAGGGGAGGAAGGAAGGAGAGAAGGAGA  100

seq1  GAAGGAGAGAAGGAGAGAAGGAGAGGAGGAGAGGAGGGAAGGAAGGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAGAAGGAGAGAAGGAGAGGAGGAGAGGAGGGAAGGAAGGAATA  150

seq1  TTCAAACCCCTGTGTCCTTAGTATTTGGCTAGCTTTTTTCCCTCTCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCCCTGTGTCCTTAGTATTTGGCTAGCTTTTTTCCCTCTCCAGT  200

seq1  GTTGGAGGCCAGCTCACAAACTGTGGTGCTCACATTCAGGCTGGGTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGCCAGCTCACAAACTGTGGTGCTCACATTCAGGCTGGGTCTTC  250

seq1  TCACTTGAATTAACAATCAAAACAACCCCTCACAGATACACTCACCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAATTAACAATCAAAACAACCCCTCACAGATACACTCACCAAAC  300

seq1  AACCCAGTCTAGAAAATTCCTCATGAAGACTCTTTTTCTTTCATCAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTCTAGAAAATTCCTCATGAAGACTCTTTTTCTTTCATCAAGAC  350

seq1  ACTTTTTTTTTCTTGGTTGTATCAAATTGACAGTTAAAACTAACCAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTCTTGGTTGTATCAAATTGACAGTTAAAACTAACCAGCAA  400

seq1  CCTCATGTAGGGACAGAAAATCCCAGAATCACCAGAACAGAGTCCCCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTAGGGACAGAAAATCCCAGAATCACCAGAACAGAGTCCCCGGG  450

seq1  GGCATCAGCCACTGTGGCAGCACATTTGGATTCCCTAGCACCATCAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGCCACTGTGGCAGCACATTTGGATTCCCTAGCACCATCAAAGT  500

seq1  GTCTCAAAGGAGGGACTGCCTTCATCCTCTGGTTTCTGTTGACAATGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAGGAGGGACTGCCTTCATCCTCTGGTTTCTGTTGACAATGGGA  550

seq1  ACTAGCAACAATGGTGTGCCAGTATGCAGATGTACTTATTGGCCCTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAACAATGGTGTGCCAGTATGCAGATGTACTTATTGGCCCTCACT  600

seq1  AGCCATGGGAATGTGTTTGTGTAAGTCAAGCCTG-CCTTTA  640
      |||||||||||||||||||||||||||||||| | ||||||
seq2  AGCCATGGGAATGTGTTTGTGTAAGTCAAGCCCGCCCTTTA  641