BAC Information

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BAC

Clone NameB6Ng01-186K23
Chromosome6 (Build37)
Map Location 106,549,662 - 106,696,386
singlet/doubletdoublet
Overlap geneCntn4, Il5ra
Upstream geneLOC100043350
Downstream geneTrnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186K23.bB6Ng01-186K23.g
ACCGA011461GA011462
length1,0751,062
definitionB6Ng01-186K23.b B6Ng01-186K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,695,293 - 106,696,386)(106,549,662 - 106,550,718)
sequence
gaattctattttcaggcactataaaatcagaatacaaggtaaattctagg
ggagagtgcttactaatataaaatattcaattacctccccactgagatat
tcagcagagtcattatttacttcaacaatttaattgcgaaggataaacag
atgtttgttatttttacaagcactgtgttaagacacttcctgttttacca
gtcagtaaaagtcactacagggtattaatttgagggtttttttttttcct
gacccagaattgttaatgaaaaccactaaggtaggacatatagaacattg
tgtcaggaaatgctgacatctaaagatgtagctttcataatttgaagcag
cagttatctttgttgttactaaggatatgttagctgagcctctcaggctc
attgcgttagaaatgcttctttagcaggaaatgtccgacttgtcgaaaat
ttagaaaacgaatgcagtgtctgctttcatggaaactggcacaagtctgg
gaagtaagtttatttgaaaataacaaaggaagaaggaagagtcgaatgcc
ttctatatgctgtccatttacagctgctgtgttattcctctaacttgggc
agcatgttaagtaagactttgtaagataagacaaaataatgaagcaagcg
tatctggtattaattttgaaaaattatccatttaatgaaggtctttccct
tggctgtactggagtaagactttgaaaattcctggccacttaagtaattg
tataaagaaaagcttcatcttattgattaatttaaaaagttatttattgt
ggaactgttaaggatctaaccagggtcttccagagtctgagcaagcttct
cccactgagctacatcacagccccgtaagtcatcttttttaaaaaattgc
ttattattattattattattagatatattcttatatacatttcaaattta
aaatgctatcccgaaagttccctatacctccccggccctgctccctaccc
accactcccgcttctgccctgcacacaagatataatgttgtttgttgttg
ttgtttaaactgaggagacacacag
gaattctcacaaaatacttatctgaattttggacgttgtagaatgtagac
cacacacagcaagcaggaagtgttgtgttactttactctgttgtttagta
aggccacaaaaattaggcaggcattgagcattttagaaaatcagtcattt
ggagctcatctgaaaagtttcgtgggggtgtgtgggtcaaagaacagctg
gatattaagactcaagttaacagtgggttagcataagctagacaggatca
agcacattttaatttcttttaaaatatttctgaactccataaatctttat
acataccatagaaactataaaagaaattcgagagtctttggaataaacaa
tgtagtagtaataaataccttgaagtctatagaaaaaatggaaatgaaaa
ttgcaaaagaacaacttggttttttttttagtaaatttacacttaatttc
aaaaaaagcatacattttgtggcaaatttcatatccataagaaattatat
tttcgagtggttttaaaacttttctttcttggcaggaaccttcaacagtg
gcaagctattattttatgatcttaactgtaatctgactgtgaaggggctg
taaagacttgcaaatgaggctgtgattagcccaggtgaagggggtgactc
acttgccacagtgcctaatgtgcatttcacattatgctccagataaatac
taagaaataaacctgaatagtccgagaaaaggtccagtttcctattttct
aagcacagtggtctaattgcaactccaatttatggcatatttcgcagggt
tgctgattaattatacagacctcctggcgttttatatttcttttcaactt
tgtctccctctatgatttgaccactacaaagcgaatatcctttaaatcac
ttattattcaggttacctcattttaggggggaaaaattgaatttgctatt
aagatcacttttctcataatcactgtaactcataaatactaatgcctgtg
cttaatatgggggcccctcctcacctctctttattgacacttaccaggca
catattgcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106695293_106696386
seq2: B6Ng01-186K23.b_47_1121 (reverse)

seq1  CTGTGTGTCTCCTCAGTTTAAAAACAAAACAAAACAAAACAAAACAAAAC  50
      |||||||||||||||||||||| |           | ||||| | | |||
seq2  CTGTGTGTCTCCTCAGTTTAAACA-----------ACAACAACAAACAAC  39

seq1  ATTATATCTTGTGTGCCAGGGCCAAGAAGCGGGAGTGGGTGGGTAGGGGA  100
      ||||||||||||||| ||||||  |||||||||||| |||||||| ||||
seq2  ATTATATCTTGTGTG-CAGGGC--AGAAGCGGGAGT-GGTGGGTA-GGGA  84

seq1  GCAGGGCCGGGGGAGGGTATAGGGAACTTTCGGGATAGCATTTTAAATTT  150
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCGGGG--AGGTATAGGGAACTTTCGGGATAGCATTTTAAATTT  132

seq1  GAAATGTATATAAAGAATATATCTAATAATAATAATAATAATAAGCAATT  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTATAT-AAGAATATATCTAATAATAATAATAATAATAAGCAATT  181

seq1  TTTTAAAAAAGATGACTTACGGGGCTGTGATGTAGCTCAGTGGGAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAGATGACTTACGGGGCTGTGATGTAGCTCAGTGGGAGAAGC  231

seq1  TTGCTCAGACTCTGGAAGACCCTGGTTAGATCCTTAACAGTTCCACAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGACTCTGGAAGACCCTGGTTAGATCCTTAACAGTTCCACAATA  281

seq1  AATAACTTTTTAAATTAATCAATAAGATGAAGCTTTTCTTTATACAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTTTTAAATTAATCAATAAGATGAAGCTTTTCTTTATACAATTA  331

seq1  CTTAAGTGGCCAGGAATTTTCAAAGTCTTACTCCAGTACAGCCAAGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTGGCCAGGAATTTTCAAAGTCTTACTCCAGTACAGCCAAGGGAA  381

seq1  AGACCTTCATTAAATGGATAATTTTTCAAAATTAATACCAGATACGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCATTAAATGGATAATTTTTCAAAATTAATACCAGATACGCTTG  431

seq1  CTTCATTATTTTGTCTTATCTTACAAAGTCTTACTTAACATGCTGCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTATTTTGTCTTATCTTACAAAGTCTTACTTAACATGCTGCCCAA  481

seq1  GTTAGAGGAATAACACAGCAGCTGTAAATGGACAGCATATAGAAGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGAATAACACAGCAGCTGTAAATGGACAGCATATAGAAGGCATT  531

seq1  CGACTCTTCCTTCTTCCTTTGTTATTTTCAAATAAACTTACTTCCCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCTTCCTTCTTCCTTTGTTATTTTCAAATAAACTTACTTCCCAGAC  581

seq1  TTGTGCCAGTTTCCATGAAAGCAGACACTGCATTCGTTTTCTAAATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCAGTTTCCATGAAAGCAGACACTGCATTCGTTTTCTAAATTTTC  631

seq1  GACAAGTCGGACATTTCCTGCTAAAGAAGCATTTCTAACGCAATGAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTCGGACATTTCCTGCTAAAGAAGCATTTCTAACGCAATGAGCCT  681

seq1  GAGAGGCTCAGCTAACATATCCTTAGTAACAACAAAGATAACTGCTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTCAGCTAACATATCCTTAGTAACAACAAAGATAACTGCTGCTT  731

seq1  CAAATTATGAAAGCTACATCTTTAGATGTCAGCATTTCCTGACACAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATGAAAGCTACATCTTTAGATGTCAGCATTTCCTGACACAATGT  781

seq1  TCTATATGTCCTACCTTAGTGGTTTTCATTAACAATTCTGGGTCAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGTCCTACCTTAGTGGTTTTCATTAACAATTCTGGGTCAGGAAA  831

seq1  AAAAAAAACCCTCAAATTAATACCCTGTAGTGACTTTTACTGACTGGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCCTCAAATTAATACCCTGTAGTGACTTTTACTGACTGGTAA  881

seq1  AACAGGAAGTGTCTTAACACAGTGCTTGTAAAAATAACAAACATCTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAGTGTCTTAACACAGTGCTTGTAAAAATAACAAACATCTGTTT  931

seq1  ATCCTTCGCAATTAAATTGTTGAAGTAAATAATGACTCTGCTGAATATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCGCAATTAAATTGTTGAAGTAAATAATGACTCTGCTGAATATCT  981

seq1  CAGTGGGGAGGTAATTGAATATTTTATATTAGTAAGCACTCTCCCCTAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGAGGTAATTGAATATTTTATATTAGTAAGCACTCTCCCCTAGA  1031

seq1  ATTTACCTTGTATTCTGATTTTATAGTGCCTGAAAATAGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTTGTATTCTGATTTTATAGTGCCTGAAAATAGAATTC  1075

seq1: chr6_106549662_106550718
seq2: B6Ng01-186K23.g_68_1129

seq1  GAATTCTCACAAAATACTTATCTGAATTTTGGACGTTGTAGAATGTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAAAATACTTATCTGAATTTTGGACGTTGTAGAATGTAGAC  50

seq1  CACACACAGCAAGCAGGAAGTGTTGTGTTACTTTACTCTGTTGTTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGCAAGCAGGAAGTGTTGTGTTACTTTACTCTGTTGTTTAGTA  100

seq1  AGGCCACAAAAATTAGGCAGGCATTGAGCATTTTAGAAAATCAGTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAAAAATTAGGCAGGCATTGAGCATTTTAGAAAATCAGTCATTT  150

seq1  GGAGCTCATCTGAAAAGTTTCGTGGGGGTGTGTGGGTCAAAGAACAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCATCTGAAAAGTTTCGTGGGGGTGTGTGGGTCAAAGAACAGCTG  200

seq1  GATATTAAGACTCAAGTTAACAGTGGGTTAGCATAAGCTAGACAGGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAGACTCAAGTTAACAGTGGGTTAGCATAAGCTAGACAGGATCA  250

seq1  AGCACATTTTAATTTCTTTTAAAATATTTCTGAACTCCATAAATCTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTTTAATTTCTTTTAAAATATTTCTGAACTCCATAAATCTTTAT  300

seq1  ACATACCATAGAAACTATAAAAGAAATTCGAGAGTCTTTGGAATAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCATAGAAACTATAAAAGAAATTCGAGAGTCTTTGGAATAAACAA  350

seq1  TGTAGTAGTAATAAATACCTTGAAGTCTATAGAAAAAATGGAAATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGTAATAAATACCTTGAAGTCTATAGAAAAAATGGAAATGAAAA  400

seq1  TTGCAAAAGAACAACTTGGTTTTTTTTTTAGTAAATTTACACTTAATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAGAACAACTTGGTTTTTTTTTTAGTAAATTTACACTTAATTTC  450

seq1  AAAAAAAGCATACATTTTGTGGCAAATTTCATATCCATAAGAAATTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCATACATTTTGTGGCAAATTTCATATCCATAAGAAATTATAT  500

seq1  TTTCGAGTGGTTTTAAAACTTTTCTTTCTTGGCAGGAACCTTCAACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGTGGTTTTAAAACTTTTCTTTCTTGGCAGGAACCTTCAACAGTG  550

seq1  GCAAGCTATTATTTTATGATCTTAACTGTAATCTGACTGTGAAGGGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTATTATTTTATGATCTTAACTGTAATCTGACTGTGAAGGGGCTG  600

seq1  TAAAGACTTGCAAATGAGGCTGTGATTAGCCCAGGTGAAGGGGGTGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTTGCAAATGAGGCTGTGATTAGCCCAGGTGAAGGGGGTGACTC  650

seq1  ACTTGCCACAGTGCCTAATGTGCATTTCACATTATGCTCCAGATAAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCACAGTGCCTAATGTGCATTTCACATTATGCTCCAGATAAATAC  700

seq1  TAAGAAATAAACCTGAATAGTCCGAGAAAAGGTCCAGTTTCCTATTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATAAACCTGAATAGTCCGAGAAAAGGTCCAGTTTCCTATTTTCT  750

seq1  AAGCACAGTGGTCTAATTGCAACTCCAATTTATGGCATATTTCGCAGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGTGGTCTAATTGCAACTCCAATTTATGGCATATTTCGCAGGGT  800

seq1  TGCTGATTAATTATACAGACCTCCTGGCGTTTTATA-TTCTTTTCAACTT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCTGATTAATTATACAGACCTCCTGGCGTTTTATATTTCTTTTCAACTT  850

seq1  TGTCTCCCTCTATGATTTGACCACTACAAAGCGAATATCC-TTAAATCAC  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTCTCCCTCTATGATTTGACCACTACAAAGCGAATATCCTTTAAATCAC  900

seq1  TTATTATTCAGGTTACCTCATTTTAGGGGGGAAAAATTGAATTTGCTATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTCAGGTTACCTCATTTTAGGGGGGAAAAATTGAATTTGCTATT  950

seq1  AAGATCACTTTCCTCATAAATCACTGTAACTCATAAATACTAATGCTTGT  998
      ||||||||||| ||||| |||||||||||||||||||||||||||| |||
seq2  AAGATCACTTTTCTCAT-AATCACTGTAACTCATAAATACTAATGCCTGT  999

seq1  GCTTAATATGGGGGCCC--CCTCACTCTC-CTTTATGGACACTTA-CAGG  1044
      |||||||||||||||||  |||||| ||| |||||| |||||||| ||||
seq2  GCTTAATATGGGGGCCCCTCCTCAC-CTCTCTTTATTGACACTTACCAGG  1048

seq1  CACATA-TGCACTT  1057
      |||||| |||||||
seq2  CACATATTGCACTT  1062