BAC Information

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BAC

Clone NameB6Ng01-187E05
Chromosome6 (Build37)
Map Location 68,717,552 - 68,852,724
singlet/doubletdoublet
Overlap geneIgk, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88
Upstream geneEG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408
Downstream geneIgkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187E05.bB6Ng01-187E05.g
ACCGA011885GA011886
length1,0721,164
definitionB6Ng01-187E05.b B6Ng01-187E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,717,552 - 68,718,613)(68,851,520 - 68,852,724)
sequence
gaattcaagaattagggtgatttggtccatggaccatttttatgtggcaa
caacttatttatatggtatcaacattattcttatactgtctttcagtaaa
gggaaataaaaccctcagaggcagatttatgatcaaataaatgatcataa
ataggagaaatacttgtcttagagacatctgctgtgtgagactaagggct
gagaaagctcctgaaacatgtaatatcgacttcatgcttcatatgaaagt
gaagcctcagagatgcatgtgattttgtgtgatggggtagaatttttgag
aaagagctgttacttaattctattagattttccagggcatttactaaatt
tttattccctacttaaaaaataaaacaaaacaaaaaaaaagcccaaaaaa
acaaaagaaaacccaaaaaagtaacttcatacatcataagatatcctttt
gttcatgccttagggtatggagaaaaggaaggaagaaagtatcaaccatt
ttgtgattaaaacaggaaaattagaattcctccatttgtcagttaacaaa
ctatacatgcctcatgaaactaaggtaggtatttagtagccataagtaat
tggttttatcattgggatgaattgtccaaattgttaacagtagaatctaa
aagctttatgtctaaagacttggacatgttgcatagagacattcatgcaa
gggttggttgattgtatgaagctcccccccaaagtcagattcttattctt
gcattgaataccttcaagatttctcatgtcagtgcttttgcatgtatgct
ggtgttacctttgttcaggtattgttttgacagttgccctttagacctca
tgaataaagtttctctgacatttctaagagagatgtgaagcatgctctga
ggactaccatgtttcaaattgttggccacattttcatctattggaggaag
tgactgcgtcctagggaagttagatgggttcttgttttagtctgtagcac
ggtgtgcgtggtaatactaactaccctgctggcaataagtaaggtggcac
attctccggctccatggtgcca
gaattcagtggacacatgaaaatcacaagaggatgggcaaggctagggac
agatgtaggctctttattttagtaacttaactgggctatacccgagtttt
ttaagcaaggacagaatactgcagtcttgctgcagatattttctgtcaat
gatagattttattataaaagaaaatttggttcatttttcaatattgcaat
gaatgtacgtttaggtataaagtccttcttttttttttatttcgattagg
tgcaacaacatttttaaacaagccacggtaaatattagaatttggctcca
cctcttcttacatttttttcttatagaatttccataaggaattctaccat
ttgaaataattattagaacatacttatcagaaatacaaataaatttccaa
tcatttgtgataacctctcagcaattgttctttttcacgctatactaaac
attttggtgtcaatgtacaaaaaaaaaaaaaatcagtgtttctttaacaa
aatactttactatctggggctaaagacatagctcagcagttaataacact
tgtttctcttgcataggacccaggttgtttcagctcacactcacctgtag
gtagaatttagagggatattaccttcttctggacttcacctgtagcagca
ttcatgtggcacacagacatacaagaaacacccatacaagggctcagaaa
aaaatgaatattttaaaaatagtttattataaggtttttttgtgtgtaat
gtgtctgcacaaggagggttggttataatttctggaaggacctaaaagaa
gagaggaaaatatgtgattataatttcaaaaaattattatgttagaaccc
aacccaattcttacattttatttcagataaaagaatgatgaaaattgaca
gtaagataataaagagatctagatttaaatatgtaaaaacaaattccatg
ttgattgactttataaccagaatccccttggtaatctgtctccttgtgga
atacaaaattagcagctctgggatctaattgcagcctgagagatgtgatc
tcagcagtctctagatgtagtattccagtaatatagagacattcacgaga
attctgtttccagatcttgtgaacagagtccaagcgttcagatgatcctg
ttcctcctctagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68717552_68718613
seq2: B6Ng01-187E05.b_48_1119

seq1  GAATTCAAGAATTAGGGTGATTTGGTCCATGGACCATTTTTATGTGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAATTAGGGTGATTTGGTCCATGGACCATTTTTATGTGGCAA  50

seq1  CAACTTATTTATATGGTATCAACATTATTCTTATACTGTCTTTCAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATTTATATGGTATCAACATTATTCTTATACTGTCTTTCAGTAAA  100

seq1  GGGAAATAAAACCCTCAGAGGCAGATTTATGATCAAATAAATGATCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATAAAACCCTCAGAGGCAGATTTATGATCAAATAAATGATCATAA  150

seq1  ATAGGAGAAATACTTGTCTTAGAGACATCTGCTGTGTGAGACTAAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGAAATACTTGTCTTAGAGACATCTGCTGTGTGAGACTAAGGGCT  200

seq1  GAGAAAGCTCCTGAAACATGTAATATCGACTTCATGCTTCATATGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCTCCTGAAACATGTAATATCGACTTCATGCTTCATATGAAAGT  250

seq1  GAAGCCTCAGAGATGCATGTGATTTTGTGTGATGGGGTAGAATTTTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCAGAGATGCATGTGATTTTGTGTGATGGGGTAGAATTTTTGAG  300

seq1  AAAGAGCTGTTACTTAATTCTATTAGATTTTCCAGGGCATTTACTAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTGTTACTTAATTCTATTAGATTTTCCAGGGCATTTACTAAATT  350

seq1  TTTATTCCCTACTTAAAAAATAAAACAAAACAAAAAAAAAGCCCAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCCTACTTAAAAAATAAAACAAAACAAAAAAAAAGCCCAAAAAA  400

seq1  ACAAAAGAAAACCCAAAAAAGTAACTTCATACATCATAAGATATCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAAACCCAAAAAAGTAACTTCATACATCATAAGATATCCTTTT  450

seq1  GTTCATGCCTTAGGGTATGGAGAAAAGGAAGGAAGAAAGTATCAACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGCCTTAGGGTATGGAGAAAAGGAAGGAAGAAAGTATCAACCATT  500

seq1  TTGTGATTAAAACAGGAAAATTAGAATTCCTCCATTTGTCAGTTAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTAAAACAGGAAAATTAGAATTCCTCCATTTGTCAGTTAACAAA  550

seq1  CTATACATGCCTCATGAAACTAAGGTAGGTATTTAGTAGCCATAAGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATGCCTCATGAAACTAAGGTAGGTATTTAGTAGCCATAAGTAAT  600

seq1  TGGTTTTATCATTGGGATGAATTGTCCAAATTGTTAACAGTAGAATCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATCATTGGGATGAATTGTCCAAATTGTTAACAGTAGAATCTAA  650

seq1  AAGCTTTATGTCTAAAGACTTGGACATGTTGCATAGAGACATTCATGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTATGTCTAAAGACTTGGACATGTTGCATAGAGACATTCATGCAA  700

seq1  GGGTTGGTTGATTGTATGAAGCTCCCCCCCAAAGTCAGATTCTTATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGTTGATTGTATGAAGCTCCCCCCCAAAGTCAGATTCTTATTCTT  750

seq1  GCATTGAATACCTTCAAGATTTCTCATGTCAGTGC-TTTGCATGTATGCT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCATTGAATACCTTCAAGATTTCTCATGTCAGTGCTTTTGCATGTATGCT  800

seq1  GGTGTTACCTTTGTTCAGGTATTGTTTTGACAGTTGCCC-TTAGACCTCA  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTGTTACCTTTGTTCAGGTATTGTTTTGACAGTTGCCCTTTAGACCTCA  850

seq1  TGAATAAAGTTTCTCTGACATTTCTAAGAGAGATGTGAAGCATGCTCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGTTTCTCTGACATTTCTAAGAGAGATGTGAAGCATGCTCTGA  900

seq1  GGACTACCATG-TTCAAATTGTTGGCCACA-TTTCATCTATT-GAGGAAG  945
      ||||||||||| |||||||||||||||||| ||||||||||| |||||||
seq2  GGACTACCATGTTTCAAATTGTTGGCCACATTTTCATCTATTGGAGGAAG  950

seq1  TGACTGCGTCCTAGGG-AGTTAGAT-GGTTCTTGTTTTAGTCTGTAGCAC  993
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TGACTGCGTCCTAGGGAAGTTAGATGGGTTCTTGTTTTAGTCTGTAGCAC  1000

seq1  GGTGTGCGTGGT-ATACT-ACTACCCTGCTGGCAGT-AGTAA-GTGGCAA  1039
      |||||||||||| ||||| ||||||||||||||| | ||||| ||||| |
seq2  GGTGTGCGTGGTAATACTAACTACCCTGCTGGCAATAAGTAAGGTGGC-A  1049

seq1  CATCTTCAGCCTCCATGGTGCCA  1062
      |||  || | |||||||||||||
seq2  CATTCTCCGGCTCCATGGTGCCA  1072

seq1: chr6_68851520_68852724
seq2: B6Ng01-187E05.g_66_1229 (reverse)

seq1  AGCTAGGAGGAGGAAACAGAGAATCATCTTGACAGCTTTGTGGACACTCT  50
      ||||| ||||||||   | || |||||| |||  |||| |     |||||
seq2  AGCTA-GAGGAGGA---ACAGGATCATC-TGAACGCTTGG-----ACTCT  40

seq1  GTTTTCACAAGAACCCTGGAAACAGAAAATCTCTGTTGAATGTCTCTATA  100
      |  |||||||||   ||||||||||||    |||  ||||||||||||||
seq2  G--TTCACAAGA--TCTGGAAACAGAA---TTCTCGTGAATGTCTCTATA  83

seq1  TTTTAACTGAAATTAAACTTACATTCTAGAGACTTCCCTGAGATTCACCA  150
      ||   |||| |||   || |||| ||||||||||   |||||| ||| ||
seq2  TT---ACTGGAAT---AC-TACA-TCTAGAGACT--GCTGAGA-TCA-CA  121

seq1  TCTCTCAGGGCTGCAATTTAAGATTCCCAGAGCTGCTAATTTTGTATTCC  200
      ||||||| ||||||||||  ||| |||||||||||||||||||||||| |
seq2  TCTCTCA-GGCTGCAATT--AGA-TCCCAGAGCTGCTAATTTTGTATT-C  166

seq1  CACAAGGGAGACAGATTACCAAGGGGGAATTCTGGTTATAAAGTCAATCA  250
      ||||| ||||||||||||||||||||  ||||||||||||||||||||||
seq2  CACAA-GGAGACAGATTACCAAGGGG--ATTCTGGTTATAAAGTCAATCA  213

seq1  ACATGGAAATTTGTTTTTACATATTTAAATCTAGATCTCTTTTATTATCT  300
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  ACATGG-AATTTGTTTTTACATATTTAAATCTAGATCTC-TTTATTATCT  261

seq1  TACTGTCAATTTTCATCATTCTTTTTATCTGAAATAAAATGTAAGAATTG  350
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACTGTCAATTTTCATCATTC-TTTTATCTGAAATAAAATGTAAGAATTG  310

seq1  GGTTGGGTTCTAACATAATAATTTTTTTGAAATTATAATCACATATTTTC  400
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTTGGGTTCTAACATAATAA-TTTTTTGAAATTATAATCACATATTTTC  359

seq1  CTCTCTTCTTTTAGGTCCTTCCAGAAATTATAACCAACCCTCCTTGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTTTTAGGTCCTTCCAGAAATTATAACCAACCCTCCTTGTGCA  409

seq1  GACACATTACACACAAAAAAACCTTATAATAAACTATTTTTAAAATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTACACACAAAAAAACCTTATAATAAACTATTTTTAAAATATTC  459

seq1  ATTTTTTTCTGAGCCCTTGTATGGGTGTTTCTTGTATGTCTGTGTGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTGAGCCCTTGTATGGGTGTTTCTTGTATGTCTGTGTGCCAC  509

seq1  ATGAATGCTGCTACAGGTGAAGTCCAGAAGAAGGTAATATCCCTCTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCTGCTACAGGTGAAGTCCAGAAGAAGGTAATATCCCTCTAAAT  559

seq1  TCTACCTACAGGTGAGTGTGAGCTGAAACAACCTGGGTCCTATGCAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTACAGGTGAGTGTGAGCTGAAACAACCTGGGTCCTATGCAAGAG  609

seq1  AAACAAGTGTTATTAACTGCTGAGCTATGTCTTTAGCCCCAGATAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTGTTATTAACTGCTGAGCTATGTCTTTAGCCCCAGATAGTAAA  659

seq1  GTATTTTGTTAAAGAAACACTGATTTTTTTTTTTTTTGTACATTGACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTTAAAGAAACACTGATTTTTTTTTTTTTTGTACATTGACACC  709

seq1  AAAATGTTTAGTATAGCGTGAAAAAGAACAATTGCTGAGAGGTTATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTAGTATAGCGTGAAAAAGAACAATTGCTGAGAGGTTATCACA  759

seq1  AATGATTGGAAATTTATTTGTATTTCTGATAAGTATGTTCTAATAATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGGAAATTTATTTGTATTTCTGATAAGTATGTTCTAATAATTAT  809

seq1  TTCAAATGGTAGAATTCCTTATGGAAATTCTATAAGAAAAAAATGTAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGGTAGAATTCCTTATGGAAATTCTATAAGAAAAAAATGTAAGA  859

seq1  AGAGGTGGAGCCAAATTCTAATATTTACCGTGGCTTGTTTAAAAATGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGAGCCAAATTCTAATATTTACCGTGGCTTGTTTAAAAATGTTG  909

seq1  TTGCACCTAATCGAAATAAAAAAAAAAGAAGGACTTTATACCTAAACGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCTAATCGAAATAAAAAAAAAAGAAGGACTTTATACCTAAACGTA  959

seq1  CATTCATTGCAATATTGAAAAATGAACCAAATTTTCTTTTATAATAAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTGCAATATTGAAAAATGAACCAAATTTTCTTTTATAATAAAAT  1009

seq1  CTATCATTGACAGAAAATATCTGCAGCAAGACTGCAGTATTCTGTCCTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTGACAGAAAATATCTGCAGCAAGACTGCAGTATTCTGTCCTTG  1059

seq1  CTTAAAAAACTCGGGTATAGCCCAGTTAAGTTACTAAAATAAAGAGCCTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAACTCGGGTATAGCCCAGTTAAGTTACTAAAATAAAGAGCCTA  1109

seq1  CATCTGTCCCTAGCCTTGCCCATCCTCTTGTGATTTTCATGTGTCCACTG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCCCTAGCCTTGCCCATCCTCTTGTGATTTTCATGTGTCCACTG  1159

seq1  AATTC  1205
      |||||
seq2  AATTC  1164