BAC Information

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BAC

Clone NameB6Ng01-187H19
Chromosome6 (Build37)
Map Location 86,908,705 - 87,041,479
singlet/doubletdoublet
Overlap geneAak1, LOC100043555, Nfu1, Gfpt1
Upstream geneDusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik
Downstream geneD6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187H19.bB6Ng01-187H19.g
ACCGA012053GA012054
length8731,143
definitionB6Ng01-187H19.b B6Ng01-187H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,040,607 - 87,041,479)(86,908,705 - 86,909,828)
sequence
gaattctttttttaaacaaacattttccaatgacattgtgctttattatt
tttttttagaaaactcataccagttaatgtatataataaacaggtaacct
tagtctcttttattgctctagaatatcctaattataaaaaaagataaaag
agtaaccccaaagactgaaggtgtgttgtgaaagtgttagtttccctcta
catgggaccaagtccagcctcctttcctcccaccttcagaaccactgagg
caagaggcctggactgaaagggttaccacctgtcacttcagaaacagcct
gctattaaaaagctgatgttggtgttctgaactaacagccttctgcacag
taccctgtgacatcactctgctgagcagggacacacaactgcttgccata
ttactaactgctgttctttatagtcccctgttccacggacaggccggggc
agctgcttatgaacatgtcaaacgaacccaggcccagcatttaatacctc
agcacagctccacctttccaccctccctcctgagcctcacaaggaccagg
tccaccagggacagtcacaattgctctgagggtctagctctgctgcccag
catggcagccgctcatacacagccgccgagccagtcacaggctaagagtg
agtggctcaccttctaacctttctatcttacggcatagattctctttttt
agaaagtagtaaccatcaagtgggccatgtgtcaggtgcctcagtcctcc
ctgcctagcaaggactcccaggtaaagatgtgtgtgtgaacttaaacaca
ctataaatgtgctcggtcctgtggcggcctgatgccccagagaagggaga
tgctagggggtgcggagggggtg
gaattcttctgcatgggagattccctcacttacttgtgttcactcctggt
ctcggatcacttgagttaaatctggtagcttccctgggactgtgcctgga
aagcagtctggtgcagtgggaagggccagcagtgcaaatgttgcccaatt
ctcatgcctcgagtcctgtcctgaattcctttgcccaacaactgtgcttt
tgctgggccttccctttggcttcccatcatttttatagttattgaaacat
tagtatttgtgaatgtggctctgtgataggcttgtgttcactccctcatt
tctcactactctcctgtgcagtttcaggcagtacatccagcagcccagca
accagtcactgctcagttccctgtggggtcccagggaggtgctcagcaac
agctgatgcagaacttctaccaccagcagcaacagcagcagcagcagcag
cagcagctgatggctcagcaggctgccctgcagcagaagactgctgtggt
agtaccacagtctcaggcacagcccgccacagccccacaggcagctgctg
cccaggagcctggggtaagactaaggaatgctggggatgctgggaaggga
aaggaaaggggcagctgcagccacaggggctctgagttagggtcaagttg
ctctcctaccctaatggttggagggtttcattttttttttcttgatagat
ccaagtgtaaagtattctgtagaaagcagagattgaaagaatatttttgc
actatttatgaaaaggaaacatcttgcttttcacacagaagttactttgg
tgggaaaagtggtcctcatcttgatcagccagggacttgggagcggaact
gttttctgttttcttcagggcccgtttgattttgttgtgtccatcctgtc
tctgggaggtcagttgttctgttgctgtgaagagacaacagttggcccat
ggtcaattccttaacaaaagaaagccatttactggggggtggccttacag
cttcaggaggctaagtctcattttcacccttgggctagagagcatggtga
caccaagcagaacatggtgctgcaggctaaacttgggagttctgaatcct
gggattccatggtagccagaagagagaaaggcctgggcctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87040607_87041479
seq2: B6Ng01-187H19.b_42_914 (reverse)

seq1  CACCCCCTCCGCACCCCCTAGCATCTCCCTTCTCTGGGGCATCAGGCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTCCGCACCCCCTAGCATCTCCCTTCTCTGGGGCATCAGGCCGC  50

seq1  CACAGGACCGAGCACATTTATAGTGTGTTTAAGTTCACACACACATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACCGAGCACATTTATAGTGTGTTTAAGTTCACACACACATCTTT  100

seq1  ACCTGGGAGTCCTTGCTAGGCAGGGAGGACTGAGGCACCTGACACATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGTCCTTGCTAGGCAGGGAGGACTGAGGCACCTGACACATGGC  150

seq1  CCACTTGATGGTTACTACTTTCTAAAAAAGAGAATCTATGCCGTAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGATGGTTACTACTTTCTAAAAAAGAGAATCTATGCCGTAAGATA  200

seq1  GAAAGGTTAGAAGGTGAGCCACTCACTCTTAGCCTGTGACTGGCTCGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTAGAAGGTGAGCCACTCACTCTTAGCCTGTGACTGGCTCGGCG  250

seq1  GCTGTGTATGAGCGGCTGCCATGCTGGGCAGCAGAGCTAGACCCTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTATGAGCGGCTGCCATGCTGGGCAGCAGAGCTAGACCCTCAGAG  300

seq1  CAATTGTGACTGTCCCTGGTGGACCTGGTCCTTGTGAGGCTCAGGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTGACTGTCCCTGGTGGACCTGGTCCTTGTGAGGCTCAGGAGGGA  350

seq1  GGGTGGAAAGGTGGAGCTGTGCTGAGGTATTAAATGCTGGGCCTGGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAAGGTGGAGCTGTGCTGAGGTATTAAATGCTGGGCCTGGGTTC  400

seq1  GTTTGACATGTTCATAAGCAGCTGCCCCGGCCTGTCCGTGGAACAGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACATGTTCATAAGCAGCTGCCCCGGCCTGTCCGTGGAACAGGGGA  450

seq1  CTATAAAGAACAGCAGTTAGTAATATGGCAAGCAGTTGTGTGTCCCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGAACAGCAGTTAGTAATATGGCAAGCAGTTGTGTGTCCCTGCT  500

seq1  CAGCAGAGTGATGTCACAGGGTACTGTGCAGAAGGCTGTTAGTTCAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGTGATGTCACAGGGTACTGTGCAGAAGGCTGTTAGTTCAGAAC  550

seq1  ACCAACATCAGCTTTTTAATAGCAGGCTGTTTCTGAAGTGACAGGTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATCAGCTTTTTAATAGCAGGCTGTTTCTGAAGTGACAGGTGGTA  600

seq1  ACCCTTTCAGTCCAGGCCTCTTGCCTCAGTGGTTCTGAAGGTGGGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCAGTCCAGGCCTCTTGCCTCAGTGGTTCTGAAGGTGGGAGGAA  650

seq1  AGGAGGCTGGACTTGGTCCCATGTAGAGGGAAACTAACACTTTCACAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTGGACTTGGTCCCATGTAGAGGGAAACTAACACTTTCACAACA  700

seq1  CACCTTCAGTCTTTGGGGTTACTCTTTTATCTTTTTTTATAATTAGGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCAGTCTTTGGGGTTACTCTTTTATCTTTTTTTATAATTAGGATA  750

seq1  TTCTAGAGCAATAAAAGAGACTAAGGTTACCTGTTTATTATATACATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGCAATAAAAGAGACTAAGGTTACCTGTTTATTATATACATTAA  800

seq1  CTGGTATGAGTTTTCTAAAAAAAAATAATAAAGCACAATGTCATTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATGAGTTTTCTAAAAAAAAATAATAAAGCACAATGTCATTGGAAA  850

seq1  ATGTTTGTTTAAAAAAAGAATTC  873
      |||||||||||||||||||||||
seq2  ATGTTTGTTTAAAAAAAGAATTC  873

seq1: chr6_86908705_86909828
seq2: B6Ng01-187H19.g_59_1201

seq1  GAATTCTTCTGCATGGGAGATTCCCTCACTTACTTGTGTTCACTCCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCATGGGAGATTCCCTCACTTACTTGTGTTCACTCCTGGT  50

seq1  CTCGGATCACTTGAGTTAAATCTGGTAGCTTCCCTGGGACTGTGCCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGATCACTTGAGTTAAATCTGGTAGCTTCCCTGGGACTGTGCCTGGA  100

seq1  AAGCAGTCTGGTGCAGTGGGAAGGGCCAGCAGTGCAAATGTTGCCCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCTGGTGCAGTGGGAAGGGCCAGCAGTGCAAATGTTGCCCAATT  150

seq1  CTCATGCCTCGAGTCCTGTCCTGAATTCCTTTGCCCAACAACTGTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCTCGAGTCCTGTCCTGAATTCCTTTGCCCAACAACTGTGCTTT  200

seq1  TGCTGGGCCTTCCCTTTGGCTTCCCATCATTTTTATAGTTATTGAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCCTTCCCTTTGGCTTCCCATCATTTTTATAGTTATTGAAACAT  250

seq1  TAGTATTTGTGAATGTGGCTCTGTGATAGGCTTGTGTTCACTCCCTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTGTGAATGTGGCTCTGTGATAGGCTTGTGTTCACTCCCTCATT  300

seq1  TCTCACTACTCTCCTGTGCAGTTTCAGGCAGTACATCCAGCAGCCCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTACTCTCCTGTGCAGTTTCAGGCAGTACATCCAGCAGCCCAGCA  350

seq1  ACCAGTCACTGCTCAGTTCCCTGTGGGGTCCCAGGGAGGTGCTCAGCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCACTGCTCAGTTCCCTGTGGGGTCCCAGGGAGGTGCTCAGCAAC  400

seq1  AGCTGATGCAGAACTTCTACCACCAGCAGCAACAGCAGCAGCAGCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGCAGAACTTCTACCACCAGCAGCAACAGCAGCAGCAGCAGCAG  450

seq1  CAGCAGCTGATGGCTCAGCAGGCTGCCCTGCAGCAGAAGACTGCTGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGATGGCTCAGCAGGCTGCCCTGCAGCAGAAGACTGCTGTGGT  500

seq1  AGTACCACAGTCTCAGGCACAGCCCGCCACAGCCCCACAGGCAGCTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACAGTCTCAGGCACAGCCCGCCACAGCCCCACAGGCAGCTGCTG  550

seq1  CCCAGGAGCCTGGGGTAAGACTAAGGAATGCTGGGGATGCTGGGAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGCCTGGGGTAAGACTAAGGAATGCTGGGGATGCTGGGAAGGGA  600

seq1  AAGGAAAGGGGCAGCTGCAGCCACAGGGGCTCTGAGTTAGGGTCAAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGGGCAGCTGCAGCCACAGGGGCTCTGAGTTAGGGTCAAGTTG  650

seq1  CTCTCCTACCCTAATGGTTGGAGGGTTTCATTTTTTTTTTCTTGATAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTACCCTAATGGTTGGAGGGTTTCATTTTTTTTTTCTTGATAGAT  700

seq1  CCAAGTGTAAAGTATTCTGTAGAAAGCAGAGATTGAAAGAATATTTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGTAAAGTATTCTGTAGAAAGCAGAGATTGAAAGAATATTTTTGC  750

seq1  ACTATTTATGAAAAGGAAACATCTTGCTTTTCACACAGAAGTTACTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTATGAAAAGGAAACATCTTGCTTTTCACACAGAAGTTACTTTGG  800

seq1  TGGGAAAAGTGGTTCCTCATCTTGATCAGCCAGGGACTTGGGAGCGGAAC  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAGTGG-TCCTCATCTTGATCAGCCAGGGACTTGGGAGCGGAAC  849

seq1  TGTTTTCTGTTTTCTTCAGGGCCCGTTTGA-TTTGTTGTGTCCATCCTGT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTTTTCTGTTTTCTTCAGGGCCCGTTTGATTTTGTTGTGTCCATCCTGT  899

seq1  CTCT-GGAGGTCAG-TGGTCTGTTGCTGTGAAGAGAC-ACAGT--GGCCA  944
      |||| ||||||||| || ||||||||||||||||||| |||||  | |||
seq2  CTCTGGGAGGTCAGTTGTTCTGTTGCTGTGAAGAGACAACAGTTGGCCCA  949

seq1  T-GTCAATTC--TTACAAAAGAAAGCCATTTAATTGGGGGTGG-CTTACA  990
      | ||||||||  | |||||||||||||||||| | |||||||| ||||||
seq2  TGGTCAATTCCTTAACAAAAGAAAGCCATTTACTGGGGGGTGGCCTTACA  999

seq1  G-TTCA-GAGGTTTAGTC-CATTTTCA-CCTTGG--TAGAGAGCATGGTG  1034
      | |||| |||| | |||| |||||||| ||||||  ||||||||||||||
seq2  GCTTCAGGAGGCTAAGTCTCATTTTCACCCTTGGGCTAGAGAGCATGGTG  1049

seq1  ACACACAAGCAG-ACATGGTGCTGGCAAGCTAA--CTGGGAGTTCTGTAT  1081
      |||| ||||||| |||||||||| ||| |||||   ||||||||||| ||
seq2  ACAC-CAAGCAGAACATGGTGCT-GCAGGCTAAACTTGGGAGTTCTGAAT  1097

seq1  C--TGGAGCCACAGGTAGCAAGAAGAGAG-AGGCCCTGGGCCTGGC  1124
      |   |||  |   |||||| ||||||||| | | ||||||||||||
seq2  CCTGGGATTCCATGGTAGCCAGAAGAGAGAAAGGCCTGGGCCTGGC  1143