BAC Information

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BAC

Clone NameB6Ng01-187K17
Chromosome6 (Build37)
Map Location 118,434,842 - 118,578,734
singlet/doubletdoublet
Overlap geneAnkrd26, Cacna1c
Upstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187K17.bB6Ng01-187K17.g
ACCGA012182GA012183
length1,1141,105
definitionB6Ng01-187K17.b B6Ng01-187K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,434,842 - 118,435,946)(118,577,636 - 118,578,734)
sequence
gaattccaaaggcagcctgagtttcatgagaccctgtgtcaaaatgacag
taacttttccattctgcatttttttctttttcataccaattactactctt
attttgctgtttcctttccaaacataccaactgtaagtaactatcttaag
gtatacaaccattggaatcaaagtagtaaattttgtgtttattgctatgt
tggtgggaccacctttacagttgtattttgtgcggatgactctactctct
gtgtagtactgaggactgaacataatcccccaaacacacgggctgaaaac
ctagctactgaggtgaacccagtctagctgagaagcatgtatgtatgata
cctcaactgtaccacaatgtactcttcctcaaatactgcaaatatttcca
ttggaacaataaaggtaatttaaaaaaaaatccaaccaatgacatagccc
atatgcacaggactcaaagagaaaaacacaagaactgttaaaaacggaga
ctccatgatggcttactaaataatggtttcctctagaatgacctcaagca
gaggtaaattagatgaaatcccaaagattcaaagagtgttcataggtata
tttacagaaatcagagagaacacagacttctgcatgaatttcaatagaac
acaaggagccagatggaagaaggaagccagtgcagcatctaaacccagta
aagagataaaaaaaacgtcaacctgacactctggaaatgagaaatgtaat
gactcaaaaagctctatggaggccctaaaaaacagttaccttcatatcaa
aaccacagaaagctaggtgtggtggcacacacctttaatcccagcactca
ggaggaagaggcactatgagtttgaggccagtcttggtctatagagtaag
ctccaggacagccaggcctacacagagaaacccttgcctcaaacaaaaca
aggcaacatcaatacaaaagatcatatacagacatcaacacaaagaaaat
taaaggtaggttttttttttttaaagaattaatttaatttatatatatgt
aaggtacacctgtagctgccttcacgacactctcagaagaagggcgtcag
aatcttggtacaga
gaattcctagggtcctttctctcctggtgctgctcccagcagggctgggt
aggctgcactagcttcagagaaggcataagggctctgaccagctcgcagg
gctttggaacacagtcggttgctcacgtgagagggggtcgggggaggaca
agggtataagttcttgttctcaggcatgggagcaatggcactgtgcctcc
agagatctggccaggcctgtgtctgtacccgcaagctccttcagactaag
acaccagtcatgaacctttggccctagactctaagcagcccagaaattct
aacccctcctcagctccccatgcctcattgctgcctctatctctttttct
ctatccatgatcacgcagcagataccctgtgtggcactccacagtagtca
cgtaccaggctcagcctttcccgggactcagtgcagatcccttttctgcc
ttgtcctgggggcatccccaggtctccagactgtggacctctagggaagg
tcacagcctctgaggctacgagagggcagccattccagagactgtaatga
agtctgggactgtggccctccccttataatacagaagccactaccaccat
ttcccagcagccatttgggccaggttcctggaaaatagaaagtggagact
gagagaagtgagacttgaatggccagagtatgctcagaggcaatgtcaga
cagctgtgtgggatgtcaccaccatctagcctcctgacagagccaagttc
cacccgcaaggcagaactgagaagataagaacttctgggttgctttctcc
caacacaggagggcaggagcccctggggcagtagctctctgggctcaaat
cccaaagcttataatatgtgaagaacttggagttatgggaaagacaagga
taggaaaaaacaaagtcatgggactcagggcttgtgacgtagcatagacc
tttaagggatgggctgctgaccttaggaggaaagtgttggtccttccacc
tcaccagagagtctggcctaaagaaagagtcctagtgcagctgccctacc
ttggcctgcctccttcaatcaatggctgtttcttcagaaggatccatcct
gcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_118434842_118435946
seq2: B6Ng01-187K17.b_46_1159

seq1  GAATTCCAAAGGCAGCCTGAGTTTCATGAGACCCTGTGTCAAAATGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGGCAGCCTGAGTTTCATGAGACCCTGTGTCAAAATGACAG  50

seq1  TAACTTTTCCATTCTGCATTTTTTTCTTTTTCATACCAATTACTACTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTCCATTCTGCATTTTTTTCTTTTTCATACCAATTACTACTCTT  100

seq1  ATTTTGCTGTTTCCTTTCCAAACATACCAACTGTAAGTAACTATCTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTGTTTCCTTTCCAAACATACCAACTGTAAGTAACTATCTTAAG  150

seq1  GTATACAACCATTGGAATCAAAGTAGTAAATTTTGTGTTTATTGCTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAACCATTGGAATCAAAGTAGTAAATTTTGTGTTTATTGCTATGT  200

seq1  TGGTGGGACCACCTTTACAGTTGTATTTTGTGCGGATGACTCTACTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGACCACCTTTACAGTTGTATTTTGTGCGGATGACTCTACTCTCT  250

seq1  GTGTAGTACTGAGGACTGAACATAATCCCCCAAACACACGGGCTGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTACTGAGGACTGAACATAATCCCCCAAACACACGGGCTGAAAAC  300

seq1  CTAGCTACTGAGGTGAACCCAGTCTAGCTGAGAAGCATGTATGTATGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTACTGAGGTGAACCCAGTCTAGCTGAGAAGCATGTATGTATGATA  350

seq1  CCTCAACTGTACCACAATGTACTCTTCCTCAAATACTGCAAATATTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACTGTACCACAATGTACTCTTCCTCAAATACTGCAAATATTTCCA  400

seq1  TTGGAACAATAAAGGTAATTTAAAAAAAAATCCAACCAATGACATAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACAATAAAGGTAATTTAAAAAAAAATCCAACCAATGACATAGCCC  450

seq1  ATATGCACAGGACTCAAAGAGAAAAACACAAGAACTGTTAAAAACGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACAGGACTCAAAGAGAAAAACACAAGAACTGTTAAAAACGGAGA  500

seq1  CTCCATGATGGCTTACTAAATAATGGTTTCCTCTAGAATGACCTCAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGATGGCTTACTAAATAATGGTTTCCTCTAGAATGACCTCAAGCA  550

seq1  GAGGTAAATTAGATGAAATCCCAAAGATTCAAAGAGTGTTCATAGGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAATTAGATGAAATCCCAAAGATTCAAAGAGTGTTCATAGGTATA  600

seq1  TTTACAGAAATCAGAGAGAACACAGACTTCTGCATGAATTTCAATAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAAATCAGAGAGAACACAGACTTCTGCATGAATTTCAATAGAAC  650

seq1  ACAAGGAGCCAGATGGAAGAAGGAAGCCAGTGCAGCATCTAAACCCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGCCAGATGGAAGAAGGAAGCCAGTGCAGCATCTAAACCCAGTA  700

seq1  AAGAGATAAAAAAAACGTCAACCTGACACTCTGGAAATGAGAAATGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAAAAAAAACGTCAACCTGACACTCTGGAAATGAGAAATGTAAT  750

seq1  GACTCAAAAAGCTCTATGGAGGCCCTAAAAAACAGTTACCTTCATATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAAAGCTCTATGGAGGCCCTAAAAAACAGTTACCTTCATATCAA  800

seq1  AACCACAGAAAGCTAGGTGTGGTGGCACACACCTTTAATCCCAGCACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGAAAGCTAGGTGTGGTGGCACACACCTTTAATCCCAGCACTCA  850

seq1  GGAGGAAGAGGCACTATGAGTTTGAGGCCAGTC-TGGTCTATAGAGTAAG  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGAGGAAGAGGCACTATGAGTTTGAGGCCAGTCTTGGTCTATAGAGTAAG  900

seq1  CTCCAGGACAGCCAGGGCTACACAGAGAAA-CCTTGCCTCAAACAAAACA  948
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  CTCCAGGACAGCCAGGCCTACACAGAGAAACCCTTGCCTCAAACAAAACA  950

seq1  AAGCAACAACAATAACAAAAGAACCATATACAGACA-CAACAACAAAGAA  997
      | |||||| |||| ||||||| | |||||||||||| |||| ||||||||
seq2  AGGCAACATCAAT-ACAAAAG-ATCATATACAGACATCAAC-ACAAAGAA  997

seq1  AATTAAAGGTAAGTTTTTTTTTTTTAAAGATTTA--TTTATTTAT-TATA  1044
      ||||||||||| |||||||||||||||||| |||  || |||||| ||||
seq2  AATTAAAGGTAGGTTTTTTTTTTTTAAAGAATTAATTTAATTTATATATA  1047

seq1  TGTAA-GTACA-CTGTAGCTGTCTTCA-GACACTC-CAGAAG-AGGGCGT  1089
      ||||| ||||| ||||||||| ||||| ||||||| |||||| |||||||
seq2  TGTAAGGTACACCTGTAGCTGCCTTCACGACACTCTCAGAAGAAGGGCGT  1097

seq1  CAG-ATCTTGTTACAGA  1105
      ||| |||||| ||||||
seq2  CAGAATCTTGGTACAGA  1114

seq1: chr6_118577636_118578734
seq2: B6Ng01-187K17.g_66_1170 (reverse)

seq1  GGGGCAGGAAGGGATCC-TCTG-AGAAACAGCCATTGGTTGAAAGGAGGC  48
      |||||||| | |||||| |||| |||||||||||||| ||| ||||||||
seq2  GGGGCAGG-ATGGATCCTTCTGAAGAAACAGCCATTGATTG-AAGGAGGC  48

seq1  AGGCCAGGGTAGGGCCAGCTGCACTA-GACTCTTTCTTTAGGCCCAGACT  97
      |||||| ||||||| ||||||||||| ||||||||||||||| |||||||
seq2  AGGCCAAGGTAGGG-CAGCTGCACTAGGACTCTTTCTTTAGG-CCAGACT  96

seq1  CTCT-GTGAGGTGGAAGG-CCAACACCTTTCTTCCT-AGGTCAGCAGCCC  144
      |||| ||||||||||||| |||||| ||||| |||| |||||||||||||
seq2  CTCTGGTGAGGTGGAAGGACCAACA-CTTTCCTCCTAAGGTCAGCAGCCC  145

seq1  ATCC--TTAAGGTCTATGCTACGTCAC-AGCCCTGAGT-CCATGACTTTG  190
      ||||  | ||||||||||||||||||| |||||||||| |||||||||||
seq2  ATCCCTTAAAGGTCTATGCTACGTCACAAGCCCTGAGTCCCATGACTTTG  195

seq1  -TTTTTCCTATCCTTGTCTTTCCCATAACTCCAAGTTCTTCACATATTAT  239
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTATCCTTGTCTTTCCCATAACTCCAAGTTCTTCACATATTAT  245

seq1  AAGCTTTGGGATTTGAGCCCAGAGAGCTACTGCCCCAGGGGCTCCTGCCC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGGGATTTGAGCCCAGAGAGCTACTGCCCCAGGGGCTCCTGCCC  295

seq1  TCCTGTGTTGGGAGAAAGCAACCCAGAAGTTCTTATCTTCTCAGTTCTGC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTGGGAGAAAGCAACCCAGAAGTTCTTATCTTCTCAGTTCTGC  345

seq1  CTTGCGGGTGGAACTTGGCTCTGTCAGGAGGCTAGATGGTGGTGACATCC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGGGTGGAACTTGGCTCTGTCAGGAGGCTAGATGGTGGTGACATCC  395

seq1  CACACAGCTGTCTGACATTGCCTCTGAGCATACTCTGGCCATTCAAGTCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCTGTCTGACATTGCCTCTGAGCATACTCTGGCCATTCAAGTCT  445

seq1  CACTTCTCTCAGTCTCCACTTTCTATTTTCCAGGAACCTGGCCCAAATGG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCTCAGTCTCCACTTTCTATTTTCCAGGAACCTGGCCCAAATGG  495

seq1  CTGCTGGGAAATGGTGGTAGTGGCTTCTGTATTATAAGGGGAGGGCCACA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGAAATGGTGGTAGTGGCTTCTGTATTATAAGGGGAGGGCCACA  545

seq1  GTCCCAGACTTCATTACAGTCTCTGGAATGGCTGCCCTCTCGTAGCCTCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGACTTCATTACAGTCTCTGGAATGGCTGCCCTCTCGTAGCCTCA  595

seq1  GAGGCTGTGACCTTCCCTAGAGGTCCACAGTCTGGAGACCTGGGGATGCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTGACCTTCCCTAGAGGTCCACAGTCTGGAGACCTGGGGATGCC  645

seq1  CCCAGGACAAGGCAGAAAAGGGATCTGCACTGAGTCCCGGGAAAGGCTGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACAAGGCAGAAAAGGGATCTGCACTGAGTCCCGGGAAAGGCTGA  695

seq1  GCCTGGTACGTGACTACTGTGGAGTGCCACACAGGGTATCTGCTGCGTGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTACGTGACTACTGTGGAGTGCCACACAGGGTATCTGCTGCGTGA  745

seq1  TCATGGATAGAGAAAAAGAGATAGAGGCAGCAATGAGGCATGGGGAGCTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATAGAGAAAAAGAGATAGAGGCAGCAATGAGGCATGGGGAGCTG  795

seq1  AGGAGGGGTTAGAATTTCTGGGCTGCTTAGAGTCTAGGGCCAAAGGTTCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGTTAGAATTTCTGGGCTGCTTAGAGTCTAGGGCCAAAGGTTCA  845

seq1  TGACTGGTGTCTTAGTCTGAAGGAGCTTGCGGGTACAGACACAGGCCTGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTGTCTTAGTCTGAAGGAGCTTGCGGGTACAGACACAGGCCTGG  895

seq1  CCAGATCTCTGGAGGCACAGTGCCATTGCTCCCATGCCTGAGAACAAGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTCTGGAGGCACAGTGCCATTGCTCCCATGCCTGAGAACAAGAA  945

seq1  CTTATACCCTTGTCCTCCCCCGACCCCCTCTCACGTGAGCAACCGACTGT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACCCTTGTCCTCCCCCGACCCCCTCTCACGTGAGCAACCGACTGT  995

seq1  GTTCCAAAGCCCTGCGAGCTGGTCAGAGCCCTTATGCCTTCTCTGAAGCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAAGCCCTGCGAGCTGGTCAGAGCCCTTATGCCTTCTCTGAAGCT  1045

seq1  AGTGCAGCCTACCCAGCCCTGCTGGGAGCAGCACCAGGAGAGAAAGGACC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGCCTACCCAGCCCTGCTGGGAGCAGCACCAGGAGAGAAAGGACC  1095

seq1  CTAGGAATTC  1099
      ||||||||||
seq2  CTAGGAATTC  1105