BAC Information

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BAC

Clone NameB6Ng01-187L06
Chromosome1 (Build37)6 (Build37)
Map Location 142,610,498 - 142,611,00620,539,652 - 20,540,383
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187L06.bB6Ng01-187L06.g
ACCGA012208GA012209
length1,051739
definitionB6Ng01-187L06.b B6Ng01-187L06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,610,498 - 142,611,006)(20,539,652 - 20,540,383)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccaattgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtttggatcgattcgc
attcttctacactataacaaccagttgtgccagtaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatagtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatagggattgcattgaatctgtagattgcttttggcaagatagccattt
tttacaatgtttgatcctgccaatccatgagcatgggagatattttccat
cttctgagatctttctttaatttctttcttcagagatttgaagtttttat
catacagatcttttcacttccttagttagagtcaccgccaaggatatttt
aatattattttgtgactattgagaatggtgttgtttcccctattttcttc
tcagcctgtttattctttgattagagaaagggccattgacttgtttgagt
t
gaattccagggccaagaagtgggagtgggtgggtaggaaagcagggcggg
gggatggtatagggaactttcaggatagcatttgaaatgtatataaagaa
aatatctaataaaaaattttaaaattaaaaaaagaatagaaaattatata
agctaaatctaaaaactctgtggacttatatataaaaattatatatatga
tatatatacactttataattatatattagctaaaaatatataataacaat
tatatattaaatatatacatatagttatttgtatgtatatttaaaataat
acagagtggttagagatatatgtcattggagtaatgatcacatagcaggc
caatgtttcaaaccagtattctatgggaaaatacagagacataatataac
tatggagaatatcaacattagtctactaagtgaagtcattgaaacagatc
aatattggcacagcaatgatgaaagagattaataaaagctcacgggaatg
caaaaggagtattccagtggatgataaatattccaatgcaaagggcagtg
ttgtaataacatgttgggaccatctgactattcactttagaaagaaaaat
atttcttagaaaatatctactttcatgaaaggtaaacccaagtctttgaa
cataaaacaataaatagaaaaatatttaatttaataagtttttcttcttg
agacaaggggagaaatattttcagtaaattttaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142610498_142611006
seq2: B6Ng01-187L06.b_580_1098 (reverse)

seq1  AACTCAAACAAGTCAATGG-CCTTTCTCTATACAAAGAATAAACAGGCTG  49
      ||||||||||||||||||| ||||||||||  ||||||||||||||||||
seq2  AACTCAAACAAGTCAATGGCCCTTTCTCTAATCAAAGAATAAACAGGCTG  50

seq1  AGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCAC-AAATAATA-  97
      ||||  ||||  ||||||||||||| |||||||||||||| |||||||| 
seq2  AGAAGAAAATAGGGGAAACAACACCATTCTCAATAGTCACAAAATAATAT  100

seq1  TAAAATAT-CTTGGC-GTGACTCTAACTAAGGAGGTG-AAAGATCTGTAT  144
      |||||||| |||||| ||||||||||||||||| ||| ||||||||||||
seq2  TAAAATATCCTTGGCGGTGACTCTAACTAAGGAAGTGAAAAGATCTGTAT  150

seq1  GATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAG-AAGATCTCAGAA  193
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAGAAAGATCTCAGAA  200

seq1  GATGG-AAAGATCTCCCATGCTCATGGATTGGCAGGATC-AACATTGT-A  240
      ||||| ||| ||||||||||||||||||||||||||||| |||||||| |
seq2  GATGGAAAATATCTCCCATGCTCATGGATTGGCAGGATCAAACATTGTAA  250

seq1  AAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCTAT  300

seq1  CAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAAT  350

seq1  TTGTCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGAT  400

seq1  AAAAGAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAG  440
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAAGAACTTCTGGCGGAATCACTATGCCAGACCTAAAGCTTTACTACAG  450

seq1  AGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAG  500

seq1  ACCAATGGAATAGAATTGA  509
      |||||||||||||||||||
seq2  ACCAATGGAATAGAATTGA  519

seq1: chr6_20539652_20540383
seq2: B6Ng01-187L06.g_63_801

seq1  GAATTCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGAAAGCAGGGCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGAAAGCAGGGCGGG  50

seq1  GGGATGGTATAGGGAACTTTCAGGATAGCATTTGAAATGTATATAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGTATAGGGAACTTTCAGGATAGCATTTGAAATGTATATAAAGAA  100

seq1  AATATCTAATAAAAAATTTTAAAATTAAAAAAAGAATAGAAAATTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTAATAAAAAATTTTAAAATTAAAAAAAGAATAGAAAATTATATA  150

seq1  AGCTAAATCTAAAAACTCTGTGGACTTATATATAAAAATTATATATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATCTAAAAACTCTGTGGACTTATATATAAAAATTATATATATGA  200

seq1  TATATATACACTTTATAATTATATATTAGCTAAAAATATATAATAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACACTTTATAATTATATATTAGCTAAAAATATATAATAACAAT  250

seq1  TATATATTAAATATATACATATAGTTATTTGTATGTATATTTAAAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTAAATATATACATATAGTTATTTGTATGTATATTTAAAATAAT  300

seq1  ACAGAGTGGTTAGAGATATATGTCATTGGAGTAATGATCACATAGCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGGTTAGAGATATATGTCATTGGAGTAATGATCACATAGCAGGC  350

seq1  CAATGTTTCAAACCAGTATTCTATGGGAAAATACAGAGACATAATATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTCAAACCAGTATTCTATGGGAAAATACAGAGACATAATATAAC  400

seq1  TATGGAGAATATCAACATTAGTCTACTAAGTGAAGTCATTGAAACAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAATATCAACATTAGTCTACTAAGTGAAGTCATTGAAACAGATC  450

seq1  AATATTGGCACAGCAATGATGAAAGAGATTAATAAAAGCTCACGGGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGCACAGCAATGATGAAAGAGATTAATAAAAGCTCACGGGAATG  500

seq1  CAAAAGGAGTATTCCAGTGGATGATAAATATTCCAATGCAAAGGGCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGTATTCCAGTGGATGATAAATATTCCAATGCAAAGGGCAGTG  550

seq1  TTGTAATAACATGTTGGGACCATCTGACTATTCAC-TTAGAAAGAAAAAT  599
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGTAATAACATGTTGGGACCATCTGACTATTCACTTTAGAAAGAAAAAT  600

seq1  ATT--CTAGAAAATATCTACTTTCATGAAAGGTAAA-CCAAGTC-TTGAA  645
      |||   |||||||||||||||||||||||||||||| ||||||| |||||
seq2  ATTTCTTAGAAAATATCTACTTTCATGAAAGGTAAACCCAAGTCTTTGAA  650

seq1  CATAAAACAATAAATAGAAAAATATTAATTTTAATAAGTTTT--CTCTTG  693
      |||||||||||||||||||||||||| | |||||||||||||   |||||
seq2  CATAAAACAATAAATAGAAAAATATTTAATTTAATAAGTTTTTCTTCTTG  700

seq1  AGACAA-GGGAGAAATATTTTCAAGTAAATTTAAATAAAA  732
      |||||| ||||||||||||||| ||||||||| |||||||
seq2  AGACAAGGGGAGAAATATTTTC-AGTAAATTTTAATAAAA  739