BAC Information

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BAC

Clone NameB6Ng01-187O14
Chromosome6 (Build37)
Map Location 120,292,791 - 120,426,925
singlet/doubletdoublet
Overlap geneCcdc77, Jarid1a, Il17ra
Upstream geneCacna2d4, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3
Downstream geneCecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187O14.bB6Ng01-187O14.g
ACCGA012358GA012359
length1,0431,124
definitionB6Ng01-187O14.b B6Ng01-187O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,425,878 - 120,426,925)(120,292,791 - 120,293,933)
sequence
gaattcttcttgcctgggctggagagaggggtggaagaagctagctgagt
aagaccctggtggtgtctgctgggaaagtggccctctgtggaccagtgcc
tcccttataactgccagagggagaaatggtttcctgatgtctagtccaga
aaagttaatatttcagcagagtgactagcctgacgtgaacttatatgcat
atttagtaatgggcagtcctctctttgctctggctgctggggcctagggc
tccaacctatgtatatacagcagggatatagggtgcacagcactctctct
gctctcacctggcctcatctattccttaaataaatgccttcacttatttt
taaaattcaaaataaaattcaataaacacagccaaataaagagagaccag
gcaagactgtggagatgtagagaccatggactgaatggggtgaggagaat
gtgggtgggacagtgaagggggaatactaactgaggagtcagtaatagat
gagatgacctcaaaacagagaactatcaagaaaacatagaaagtaacaaa
acatagctgcgctctggtggggcgcgcacacagctctcaggaggcagagg
cagatggatccctttgagttagaggccagcctgttttacagagggagttc
tatgagagccaggactacacagagaaactctgcctccaaaaacaaagtac
ctgagcttgccactgaaggattcttgccacttaaccctcccactactcca
gtatttagttcccttaacctcaagttacgatgcaattttgcccaaggcct
tcaaaggtataagcagactttaagtttaatttatgttatttaagggactg
caaaactttaccttgcatctactgaatgcaaatcaactgagtttattaaa
ccgagttcccactaaattgatgggataaaataaaatttagtttacactac
gtatcttacgaccagcttaatctgcttctcctcctggctctgcaagactt
tgattctgctcttccgtctgcagtcaatattgagccttcacat
gaattcaaagaaggggccagggaataatttcttagctgtttctaggagat
tacagtagttggtcttcctcgtggctcacactccactctcccttcagaac
tgctcaagagaaaggacacttgctttcctgcttatgcctcccatcctcag
ggacagcctgcctgcagtgccctctcagtgaggctgggatggggaataaa
catccattctctttgcctcagtgcagatggctcagtgtcagggcccccat
ggtattgactgggacctgctataaccaaattacagtcaaggttctccatc
tgcccagccagactccccttgtttcctcagaggcagacttttcccagcaa
acatcctggaagaaaatcccatagtgcagtttgtttcccaaggcacccaa
cctaacacagctaatgtcaggaacaatccaaggaagcaagctcaacaggg
atttctcagagctaaggacagatgatttacagagcatcctgttcctaaga
gcaggacaggggaggaattaacgggtctttggttaaacaattacaataat
caaaaaggaaaagaggtggccactctcctctaaaacaaacaaacaaaaac
tgtaaagacgaccccacagtctgtgccagcaagaggactcagtgaattaa
tgtgtacactgaacaaacttgggaccagttcattcccagaaacccatggt
agaagaaaaaaattgattcctaaaagttgtcttctgacttcataatacac
catggcacaaatgtccctgcttgcatgttctcttactctctctcatacac
acgcatacacacatgcacaccacagtaataagcaagattaaaattaaaaa
aaaaaaaaaaatcacactgggcatggtagttcatgcttttaatcccagtc
cttggaggcagatttctctctttgagttggaagcctgatctacattggaa
gttttaggccagtcagcctacataaaacaaacaaacaaacaaaacaaact
ataccctcttttctattttcagcgatatctgagagagcttatctccagga
caagacctgttttccacagtatttcaggctgcagtacagcctcaggaaat
gctgtacctagtactggaagcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120425878_120426925
seq2: B6Ng01-187O14.b_43_1085 (reverse)

seq1  AAGTGAA-GCTC-ATATTGAACTGCAGAACGGAAGAGGCAGAATCAAAGT  48
      | ||||| |||| |||||| ||||||| |||||||| |||||||||||||
seq2  ATGTGAAGGCTCAATATTG-ACTGCAG-ACGGAAGA-GCAGAATCAAAGT  47

seq1  CTCTGCAGAGCCAGGAGGGAGAAGCAGATTTAAGCTGGTCGTAAGATACG  98
      || ||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  CT-TGCAGAGCCAGGA-GGAGAAGCAGA-TTAAGCTGGTCGTAAGATACG  94

seq1  TAGTTGTTAACTAAAATTTTATTTTATCCCATCAATTTAGTGGGAACTTG  148
      ||| ||| |||| ||||||||||||||||||||||||||||||||||| |
seq2  TAG-TGTAAACT-AAATTTTATTTTATCCCATCAATTTAGTGGGAACTCG  142

seq1  GTTTAATAAACTCAGTTGATTTGCATTCAGTAGATGCAAGGTAAAGTTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAAACTCAGTTGATTTGCATTCAGTAGATGCAAGGTAAAGTTTT  192

seq1  GCAGT-CCTTAAATAACATAAATTAAACTTAAAGTCTGCTTATACCTTTG  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCCTTAAATAACATAAATTAAACTTAAAGTCTGCTTATACCTTTG  242

seq1  AAGGCCTTGGGC-AAATTGCATCGTAAACTTGAGGTTAAGGGAACTAAAT  296
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  AAGGCCTTGGGCAAAATTGCATCGT-AACTTGAGGTTAAGGGAACTAAAT  291

seq1  ACTGGAGTAGTGGGAGGGTTAAGTGGCAAGAATCCTTCAGTGGCAAGCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTAGTGGGAGGGTTAAGTGGCAAGAATCCTTCAGTGGCAAGCTC  341

seq1  AGGTACTTTGTTTTTGGAGGCAGAGTTTCTCTGTGTAGTCCTGGCTCTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTTGTTTTTGGAGGCAGAGTTTCTCTGTGTAGTCCTGGCTCTCA  391

seq1  TAGAACTCCCTCTGTAAAACAGGCTGGCCTCTAACTCAAAGGGATCCATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCCCTCTGTAAAACAGGCTGGCCTCTAACTCAAAGGGATCCATC  441

seq1  TGCCTCTGCCTCCTGAGAGCTGTGTGCGCGCCCCACCAGAGCGCAGCTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCTGAGAGCTGTGTGCGCGCCCCACCAGAGCGCAGCTAT  491

seq1  GTTTTGTTACTTTCTATGTTTTCTTGATAGTTCTCTGTTTTGAGGTCATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTACTTTCTATGTTTTCTTGATAGTTCTCTGTTTTGAGGTCATC  541

seq1  TCATCTATTACTGACTCCTCAGTTAGTATTCCCCCTTCACTGTCCCACCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATTACTGACTCCTCAGTTAGTATTCCCCCTTCACTGTCCCACCC  591

seq1  ACATTCTCCTCACCCCATTCAGTCCATGGTCTCTACATCTCCACAGTCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCCTCACCCCATTCAGTCCATGGTCTCTACATCTCCACAGTCTT  641

seq1  GCCTGGTCTCTCTTTATTTGGCTGTGTTTATTGAATTTTATTTTGAATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTCTCTTTATTTGGCTGTGTTTATTGAATTTTATTTTGAATTT  691

seq1  TAAAAATAAGTGAAGGCATTTATTTAAGGAATAGATGAGGCCAGGTGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAGTGAAGGCATTTATTTAAGGAATAGATGAGGCCAGGTGAGA  741

seq1  GCAGAGAGAGTGCTGTGCACCCTATATCCCTGCTGTATATACATAGGTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAGTGCTGTGCACCCTATATCCCTGCTGTATATACATAGGTTG  791

seq1  GAGCCCTAGGCCCCAGCAGCCAGAGCAAAGAGAGGACTGCCCATTACTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTAGGCCCCAGCAGCCAGAGCAAAGAGAGGACTGCCCATTACTAA  841

seq1  ATATGCATATAAGTTCACGTCAGGCTAGTCACTCTGCTGAAATATTAACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATATAAGTTCACGTCAGGCTAGTCACTCTGCTGAAATATTAACT  891

seq1  TTTCTGGACTAGACATCAGGAAACCATTTCTCCCTCTGGCAGTTATAAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGACTAGACATCAGGAAACCATTTCTCCCTCTGGCAGTTATAAGG  941

seq1  GAGGCACTGGTCCACAGAGGGCCACTTTCCCAGCAGACACCACCAGGGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTGGTCCACAGAGGGCCACTTTCCCAGCAGACACCACCAGGGTC  991

seq1  TTACTCAGCTAGCTTCTTCCACCCCTCTCTCCAGCCCAGGCAAGAAGAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGCTAGCTTCTTCCACCCCTCTCTCCAGCCCAGGCAAGAAGAAT  1041

seq1  TC  1048
      ||
seq2  TC  1043

seq1: chr6_120292791_120293933
seq2: B6Ng01-187O14.g_67_1190

seq1  GAATTCAAAGAAGGGGCCAGGGAATAATTTCTTAGCTGTTTCTAGGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAGGGGCCAGGGAATAATTTCTTAGCTGTTTCTAGGAGAT  50

seq1  TACAGTAGTTGGTCTTCCTCGTGGCTCACACTCCACTCTCCCTTCAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGTTGGTCTTCCTCGTGGCTCACACTCCACTCTCCCTTCAGAAC  100

seq1  TGCTCAAGAGAAAGGACACTTGCTTTCCTGCTTATGCCTCCCATCCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGAGAAAGGACACTTGCTTTCCTGCTTATGCCTCCCATCCTCAG  150

seq1  GGACAGCCTGCCTGCAGTGCCCTCTCAGTGAGGCTGGGATGGGGAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCTGCCTGCAGTGCCCTCTCAGTGAGGCTGGGATGGGGAATAAA  200

seq1  CATCCATTCTCTTTGCCTCAGTGCAGATGGCTCAGTGTCAGGGCCCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTCTCTTTGCCTCAGTGCAGATGGCTCAGTGTCAGGGCCCCCAT  250

seq1  GGTATTGACTGGGACCTGCTATAACCAAATTACAGTCAAGGTTCTCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGACTGGGACCTGCTATAACCAAATTACAGTCAAGGTTCTCCATC  300

seq1  TGCCCAGCCAGACTCCCCTTGTTTCCTCAGAGGCAGACTTTTCCCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCCAGACTCCCCTTGTTTCCTCAGAGGCAGACTTTTCCCAGCAA  350

seq1  ACATCCTGGAAGAAAATCCCATAGTGCAGTTTGTTTCCCAAGGCACCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGGAAGAAAATCCCATAGTGCAGTTTGTTTCCCAAGGCACCCAA  400

seq1  CCTAACACAGCTAATGTCAGGAACAATCCAAGGAAGCAAGCTCAACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACAGCTAATGTCAGGAACAATCCAAGGAAGCAAGCTCAACAGGG  450

seq1  ATTTCTCAGAGCTAAGGACAGATGATTTACAGAGCATCCTGTTCCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAGAGCTAAGGACAGATGATTTACAGAGCATCCTGTTCCTAAGA  500

seq1  GCAGGACAGGGGAGGAATTAACGGGTCTTTGGTTAAACAATTACAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAGGGGAGGAATTAACGGGTCTTTGGTTAAACAATTACAATAAT  550

seq1  CAAAAAGGAAAAGAGGTGGCCACTCTCCTCTAAAACAAACAAACAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGAAAAGAGGTGGCCACTCTCCTCTAAAACAAACAAACAAAAAC  600

seq1  TGTAAAGACGACCCCACAGTCTGTGCCAGCAAGAGGACTCAGTGAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGACGACCCCACAGTCTGTGCCAGCAAGAGGACTCAGTGAATTAA  650

seq1  TGTGTACACTGAACAAACTTGGGACCAGTTCATTCCCAGAAACCCATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACTGAACAAACTTGGGACCAGTTCATTCCCAGAAACCCATGGT  700

seq1  AGAAGAAAAAAATTGATTCCTAAAAGTTGTCTTCTGACTTCATAATACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAAATTGATTCCTAAAAGTTGTCTTCTGACTTCATAATACAC  750

seq1  CATGGCACAAATGTCCCTGCTTGCATGTTCTCTTACTCTCTCTCATACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACAAATGTCCCTGCTTGCATGTTCTCTTACTCTCTCTCATACAC  800

seq1  ACGCATACACACATGCACACCACAGTAATAAGCAAGATTAAAATT-AAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACGCATACACACATGCACACCACAGTAATAAGCAAGATTAAAATTAAAAA  850

seq1  AAAAAAAAAAATCACACTGGGCATGGTAGTTCATGCTTTTAATCCCAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAATCACACTGGGCATGGTAGTTCATGCTTTTAATCCCAGTC  900

seq1  CTTGGGAGGCAGATTTCTCTCTTTGAGTTGGAAGCCTGATCTACATTGGA  949
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTT-GGAGGCAGATTTCTCTCTTTGAGTTGGAAGCCTGATCTACATTGGA  949

seq1  AGTTTTAGGCCAGTCAGGCCTACATAAAACAAACAAACAAACAAAACAAA  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTTTTAGGCCAGTCA-GCCTACATAAAACAAACAAACAAACAAAACAAA  998

seq1  CTATACCCTCTTTCTAATTTTCCAGGCGATAATCTGAAGAAGAGCCTTAT  1049
      |||||||||||||   ||||||   ||||| ||||||   |||| |||||
seq2  CTATACCCTCTTTTCTATTTTC--AGCGAT-ATCTGA--GAGAG-CTTAT  1042

seq1  CTCCCAGGACAAGACCCTGTTTTTCCACAAGTATTTCAAGGCCTGCAGGG  1099
      || ||||||||||| |||| |||||||| |||||||||  | |||||  |
seq2  CT-CCAGGACAAGA-CCTG-TTTTCCAC-AGTATTTCA--GGCTGCA--G  1084

seq1  TACAGGGCCTCAGGAGATGCTGTTACCTAGTAACCTGAAGCAAC  1143
      ||||  ||||||||| |||||| |||||||| ||  ||||||||
seq2  TACA--GCCTCAGGAAATGCTG-TACCTAGT-ACTGGAAGCAAC  1124