BAC Information

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BAC

Clone NameB6Ng01-188C02
Chromosome6 (Build37)
Map Location 35,789,799 - 35,790,935
singlet/doubletsinglet
Overlap genenone
Upstream geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
Downstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188C02.bB6Ng01-188C02.g
ACCGA012517GA012518
length3261,112
definitionB6Ng01-188C02.b B6Ng01-188C02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
actttgcccctatatttttccccactgataaaggaagttaggataatgat
tacatgttataatattcagacaccttcatacacagacttcagacaatacc
aagttgttctgaccaaggatatcaatccagagagcatggtggttatgctg
gttaattgtatgtcagcttggcacaagctatagtcatttgtgaagaggaa
tattaaaaaaaaaaaatactccataggattggcctgtagggaagtctata
ggtcattttctgttttttttttttttttttttttggttgtttgtttgttt
agttggttggtttgttggttgattgg
gaattctttgcttccttggacagagccacgaaaaaaaaataccattgtgc
acttatttgttttctgttgagttatttctctaggacacgttcccaggagt
agaatttttgggttgaagaaaatgatacatttttatggcccctggtataa
attgccataaagatgggctttaataaaatttcagtagctatttctccttg
aggatcctaaaggacaaggactgtttagctgcctttgaaaaatctgcctg
ttccattttctgggccatggatgttaccagaggcatggagaggtgaggag
agaggggatgactaaggagacactgcagtgaatcagcatccacagagcac
cccagcctaggtttcctgcagttcacactctgcaacttgtttctggactc
tgcttttctggctttctcagctctgtgagatgggcccaggctatagtggg
tggccagtcaagacacatcagatattactaggcagaacatggaaagagtc
cttggagtctttcagaattggagagacaaaggtgagacttagctaagggg
tgggttggtggcagtgccatgtgtctgtgctgtggggttttcccagttct
gatcatgagaatggcggtgtttattctgctgattaaggatgatgtataca
gttatgggccttgacaacatctttgaaaaacagcagctccatccaccaaa
cacagactatgacttaaagtcaggagcaaatacagatgacatacagaata
tgggacagaatggaggagggaaatacgtgcttcagtaatatgtacaccac
tggggaatttttaaaataaggtttttggtcacaatttcattccatttctt
tcttctttctttctttcttctttctttctttctttcttctttctttcttt
ctttcttctttctttctctctctctctctctctctctctctcactcgctc
tctcgtgcgttcttcattttctttagatttttcgaaacaaaatctctgtg
taggcctggctgtcatggactcactctgtacacagcctgtctggaattca
gatcgcatgcatcttgactacgagtgctgggataatgcactgtcaccact
gccagcaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35789799_35790935
seq2: B6Ng01-188C02.g_66_1177

seq1  GAATTCTTTGCTTCCTTGGACAGAGCCACGAAAAAAAAATACCATTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTTCCTTGGACAGAGCCACGAAAAAAAAATACCATTGTGC  50

seq1  ACTTATTTGTTTTCTGTTGAGTTATTTCTCTAGGACACGTTCCCAGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTGTTTTCTGTTGAGTTATTTCTCTAGGACACGTTCCCAGGAGT  100

seq1  AGAATTTTTGGGTTGAAGAAAATGATACATTTTTATGGCCCCTGGTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTTGGGTTGAAGAAAATGATACATTTTTATGGCCCCTGGTATAA  150

seq1  ATTGCCATAAAGATGGGCTTTAATAAAATTTCAGTAGCTATTTCTCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCATAAAGATGGGCTTTAATAAAATTTCAGTAGCTATTTCTCCTTG  200

seq1  AGGATCCTAAAGGACAAGGACTGTTTAGCTGCCTTTGAAAAATCTGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTAAAGGACAAGGACTGTTTAGCTGCCTTTGAAAAATCTGCCTG  250

seq1  TTCCATTTTCTGGGCCATGGATGTTACCAGAGGCATGGAGAGGTGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTTCTGGGCCATGGATGTTACCAGAGGCATGGAGAGGTGAGGAG  300

seq1  AGAGGGGATGACTAAGGAGACACTGCAGTGAATCAGCATCCACAGAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGATGACTAAGGAGACACTGCAGTGAATCAGCATCCACAGAGCAC  350

seq1  CCCAGCCTAGGTTTCCTGCAGTTCACACTCTGCAACTTGTTTCTGGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTAGGTTTCCTGCAGTTCACACTCTGCAACTTGTTTCTGGACTC  400

seq1  TGCTTTTCTGGCTTTCTCAGCTCTGTGAGATGGGCCCAGGCTATAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTGGCTTTCTCAGCTCTGTGAGATGGGCCCAGGCTATAGTGGG  450

seq1  TGGCCAGTCAAGACACATCAGATATTACTAGGCAGAACATGGAAAGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGTCAAGACACATCAGATATTACTAGGCAGAACATGGAAAGAGTC  500

seq1  CTTGGAGTCTTTCAGAATTGGAGAGACAAAGGTGAGACTTAGCTAAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTCTTTCAGAATTGGAGAGACAAAGGTGAGACTTAGCTAAGGGG  550

seq1  TGGGTTGGTGGCAGTGCCATGTGTCTGTGCTGTGGGGTTTTCCCAGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGTGGCAGTGCCATGTGTCTGTGCTGTGGGGTTTTCCCAGTTCT  600

seq1  GATCATGAGAATGGCGGTGTTTATTCTGCTGATTAAGGATGATGTATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGAGAATGGCGGTGTTTATTCTGCTGATTAAGGATGATGTATACA  650

seq1  GTTATGGGCCTTGACAACATCTTTGAAAAACAGCAGCTCCATCCACCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGGCCTTGACAACATCTTTGAAAAACAGCAGCTCCATCCACCAAA  700

seq1  CACAGACTATGACTTAAAGTCAGGAGCAAATACAGATGACATACAGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTATGACTTAAAGTCAGGAGCAAATACAGATGACATACAGAATA  750

seq1  TGGGACAGAATGGAGGAGGGAAATACGTGCTTCAGTAATATGTACACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGAATGGAGGAGGGAAATACGTGCTTCAGTAATATGTACACCAC  800

seq1  TGGGGAATTTTTAAAATAAGGTTTTTGGTCACAATTTCATTCCATTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATTTTTAAAATAAGGTTTTTGGTCACAATTTCATTCCATTTCTT  850

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  900
      || ||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  TC-TTCTTTCTTTCTTTC-TTCTTTCTTTCTTTCTTTC-TTCTTTCTTTC  897

seq1  TTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  950
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTTTC-TTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTC  946

seq1  TCTCTCTCTCTCTTTCTTTCTTTCTTTTTTCTTTTTGGTTTTTTCGAGAC  1000
       |||||        || | | |||||  || | ||| | |||||||| ||
seq2  GCTCTC--------TCGTGCGTTCTTCATTTTCTTTAGATTTTTCGAAAC  988

seq1  AGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTACACCA  1050
      |     ||||||||||| |||||||||| ||| |||||||||||||| ||
seq2  A--AAATCTCTGTGTAGGCCTGGCTGTCATGG-ACTCACTCTGTACA-CA  1034

seq1  GGCTGGCCTTGAATTCAGAAATTCGCCTGCCTC-TGCCTCCCAAGTGCTG  1099
      | || | || |||||||||   |||| ||| || || ||  | |||||||
seq2  GCCT-GTCTGGAATTCAGA---TCGCATGCATCTTGACT-ACGAGTGCTG  1079

seq1  GGATTAAAGGCACGTGCCACCACTGCCCAGCAAATGAA  1137
      ||||  || |||| || |||||||| ||||| ||||||
seq2  GGAT--AATGCAC-TGTCACCACTG-CCAGC-AATGAA  1112