BAC Information

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BAC

Clone NameB6Ng01-188I23
Chromosome6 (Build37)
Map Location 121,556,881 - 121,715,184
singlet/doubletdoublet
Overlap geneLOC100043486, A2m, EG640530
Upstream geneCecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3
Downstream geneMug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188I23.bB6Ng01-188I23.g
ACCGA012830GA012831
length1,2141,152
definitionB6Ng01-188I23.b B6Ng01-188I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,556,881 - 121,557,892)(121,714,017 - 121,715,184)
sequence
gaattctccttttcaatggagcttccccttccccactgaccttatctggg
gactaagcacagatgtctgaccttatctggaggatgaccctgcacagagc
ttcctgcaagtgctgcatgattcagcacgtaagtccttgctcagcccttc
ctgacatgacaattacgtactgtgttatgagcagtcaaccctcttctccg
tacccctaagagccctaatgtaccctatacttggagcattaaagtcaagc
tgtctgaagcagtctccagaagtcctttcatcatctcacagctggcaaac
cttgctcgttgcttctgctaccttcacccttgtggaccagtggccaatga
ccttcaatgagaaaggaaacccacacatagtgtgtgagtttcaggacacc
cagggctaagtagagagaccctttcccaaaaaataaaacaaaagacaacc
atttgtgtatttaactaatcttaaaattctatctgctttgtctatatatg
tttgaagttctgtattaggaacacgaatatttagaattatatgctttttg
gaatctgtatctatttatcattacgaaatgatcttatttgttcctgataa
tgtttttctctgaaatatattttgattaacatttaaaacttgagatgggg
tcttatacatcatccaagttggctttgtactcctgggcttaactaaaagc
aatgacttcacttaggtgctactggcctaaggaagaggtcttaatctaag
gtgtgatagtttaaatgagatttcccttcaaatgagaggacattgagatc
cccaacaaaaatcagttataaatatgttcaaagtttcagagaacacaaac
ttaggaatgaatttaaaagaatgaaaataatctgggtggattcaaaagga
acacaaacaaatagctgaatgaataaatcagttaaggattttagaagatg
tgatatgcatgttggagtccagcaatggtttcacatcctccaattcctcc
tacttagggtatccaaatgtcactgcacaccagggctggaagagtgaagc
agaagttcatcttggatgggtggagttcttcaagaatccctttcggacaa
gagtaagtgcttggggctatatggtaggcttctctgaggatcttaggtga
cgctcttttagacggagggcctcctctcaaaggacttttaataaaacagc
tctctctttagata
gaattctttggttttgttttgttttgttgttgtttgtttgctgtttgttt
gtttgttgtttcaatttggagccagtactcaccaggtagtagaaaacgag
ctctttcagcactccaaagtcccacttcagaataaaatgtgcctgaactg
tgtgaatctggttgcagggcaagatgctgctggtctctgtgtcaaggtag
atgtagctcttgctgagggaagaaacagcataggccacatgatctgcact
tgcatatctttcctccatgcaatagaaatgggaatatgaatcttcctctt
tgtgtttgacctggaaaaacaacaaaatactatgccgtagattgcctagc
agacagaatatctcttctgtgatgaatcagtgggttttcccattttattt
aatgattgagtatttgtacatattattaaaaatggaggggaatttcatta
aatggattgatgtctaacaccctgaattttcagaatcgaagcaaatattt
ataccaggtaagagggaaaaaggaagtgcattatttttatcagacaaagg
aaccatttattgtgcatctaatatataatgaaaattttacagatataaat
tttagtgaataatgaatgtagaaaataattgtttaacagaaatattttca
tatattaatgtagtgtactctgagcatcttcatccaccttacaatggcat
tctatgtctcctgctggctctattcttccttaatggaccctctctgcttt
cattcctgtttccctaggttccacatatgggggacttacagagataattt
ctcctagtctcatacgcttttcttataatgacaatgtacaaatccattca
tttctctatagacaagatgactctcttataaatatctgagtaaaagtcca
atgtgaacatatttacaaattttctctatccactcatgtaacagtgggct
tttcctgatgtgccagttcataaagtatgactgcaagaatgaatattcat
acctgtttattctttctgttggtactctcagtttgggcaaatttctcaca
cctaactctacccagaaattctctcaatacctacctcacctcccgggttc
tgtctgaagcctaatgccaatggccatttaatgacaggtatgcttccata
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121556881_121557892
seq2: B6Ng01-188I23.b_244_1260

seq1  TCCGTACCCCTAAGAGCCCTAATGTACCCTATACTTGGAGCATTAAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTACCCCTAAGAGCCCTAATGTACCCTATACTTGGAGCATTAAAGTC  50

seq1  AAGCTGTCTGAAGCAGTCTCCAGAAGTCCTTTCATCATCTCACAGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCTGAAGCAGTCTCCAGAAGTCCTTTCATCATCTCACAGCTGGC  100

seq1  AAACCTTGCTCGTTGCTTCTGCTACCTTCACCCTTGTGGACCAGTGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTGCTCGTTGCTTCTGCTACCTTCACCCTTGTGGACCAGTGGCCA  150

seq1  ATGACCTTCAATGAGAAAGGAAACCCACACATAGTGTGTGAGTTTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTCAATGAGAAAGGAAACCCACACATAGTGTGTGAGTTTCAGGA  200

seq1  CACCCAGGGCTAAGTAGAGAGACCCTTTCCCAAAAAATAAAACAAAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGGCTAAGTAGAGAGACCCTTTCCCAAAAAATAAAACAAAAGAC  250

seq1  AACCATTTGTGTATTTAACTAATCTTAAAATTCTATCTGCTTTGTCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTGTGTATTTAACTAATCTTAAAATTCTATCTGCTTTGTCTATA  300

seq1  TATGTTTGAAGTTCTGTATTAGGAACACGAATATTTAGAATTATATGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGAAGTTCTGTATTAGGAACACGAATATTTAGAATTATATGCTT  350

seq1  TTTGGAATCTGTATCTATTTATCATTACGAAATGATCTTATTTGTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATCTGTATCTATTTATCATTACGAAATGATCTTATTTGTTCCTG  400

seq1  ATAATGTTTTTCTCTGAAATATATTTTGATTAACATTTAAAACTTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTTTTCTCTGAAATATATTTTGATTAACATTTAAAACTTGAGAT  450

seq1  GGGGTCTTATACATCATCCAAGTTGGCTTTGTACTCCTGGGCTTAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTATACATCATCCAAGTTGGCTTTGTACTCCTGGGCTTAACTAA  500

seq1  AAGCAATGACTTCACTTAGGTGCTACTGGCCTAAGGAAGAGGTCTTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGACTTCACTTAGGTGCTACTGGCCTAAGGAAGAGGTCTTAATC  550

seq1  TAAGGTGTGATAGTTTAAATGAGATTTCCCTTCAAATGAGAGGACATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTGATAGTTTAAATGAGATTTCCCTTCAAATGAGAGGACATTGA  600

seq1  GATCCCCAACAAAAATCAGTTATAAATATGTTCAAAGTTTCAGAGAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCAACAAAAATCAGTTATAAATATGTTCAAAGTTTCAGAGAACAC  650

seq1  AAACTTAGGAATGAATTTAAAAGAATGAAAATAATCTGGGTGGATTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGGAATGAATTTAAAAGAATGAAAATAATCTGGGTGGATTCAAA  700

seq1  AGGAACACAAACAAATAGCTGAATGAAATAAATCAGTTAAGGATTTTAGA  750
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAACACAAACAAATAGCTGAATG-AATAAATCAGTTAAGGATTTTAGA  749

seq1  AGATGTGATATGCATGTTGGAGTCCAGCAATGGTTTCACATCCTCCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGATGTGATATGCATGTTGGAGTCCAGCAATGGTTTCACATCCTCCAATT  799

seq1  CCTCCTACTTAGGGTATCCAAATGTCACTGCACACCA-GGCTGGAAGAGT  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTCCTACTTAGGGTATCCAAATGTCACTGCACACCAGGGCTGGAAGAGT  849

seq1  GAAGCAG-AGTTCATCTGGGATGGGTGGAGTTCTTCAAG-ATCCCTGTCT  897
      ||||||| ||||||||| ||||||||||||||||||||| |||||| || 
seq2  GAAGCAGAAGTTCATCTTGGATGGGTGGAGTTCTTCAAGAATCCCTTTCG  899

seq1  GAGCAGGAGTAAGTGC-TGGGGCTATATGGTAGGCCTTCTCTGAGGATCT  946
      || || |||||||||| ||||||||||||||||| |||||||||||||||
seq2  GA-CAAGAGTAAGTGCTTGGGGCTATATGGTAGG-CTTCTCTGAGGATCT  947

seq1  TAGTGTGACAGCTCTTTTAGACGGA-GGCCTCCTC-CAAAGGTC-TTTAA  993
      ||| ||||| ||||||||||||||| ||||||||| |||||| | |||||
seq2  TAG-GTGAC-GCTCTTTTAGACGGAGGGCCTCCTCTCAAAGGACTTTTAA  995

seq1  TAAAACAGCTCTC---TTAGAT  1012
      |||||||||||||   ||||||
seq2  TAAAACAGCTCTCTCTTTAGAT  1017

seq1: chr6_121714017_121715184
seq2: B6Ng01-188I23.g_66_1217 (reverse)

seq1  TTTATGGAAGCATCACCTGTCAATAAAATGCCATTGGCCTATTA-GCTTC  49
      ||||||||||||| |||||||| ||||  |||||||||  |||| |||||
seq2  TTTATGGAAGCAT-ACCTGTCATTAAATGGCCATTGGC--ATTAGGCTTC  47

seq1  AGCAGGAAACCGGGAGGTGGAAGTTAAGGTATGGAGAGAATTTCTGGGGT  99
      ||   ||| ||||||||||  || | |||||| |||||||||||| ||||
seq2  AGACAGAACCCGGGAGGTG--AGGT-AGGTATTGAGAGAATTTCT-GGGT  93

seq1  AGAGTTAGGTGTGAGAAATTTGCCCCAAACTGAGAGGTAACCAACAGAAA  149
      |||||||||||||||||||||| |||||||||||||   |||||||| ||
seq2  AGAGTTAGGTGTGAGAAATTTG-CCCAAACTGAGAG--TACCAACAG-AA  139

seq1  AGAATAAACAGGGTAATTGAATAATTCATTCTTGCAGTCATACTTTTATG  199
      |||||||||| ||||  ||||| |||||||||||||||||||| ||||||
seq2  AGAATAAACA-GGTA--TGAAT-ATTCATTCTTGCAGTCATAC-TTTATG  184

seq1  AACTTGGGCACATCAGGAAAAGCCCACTGTTACATGAGTGGATAGAGAAA  249
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACT--GGCACATCAGGAAAAGCCCACTGTTACATGAGTGGATAGAGAAA  232

seq1  A-TTGTAAATATGTTCACATTGGACTTTTACTCAGATATTTATAAGAGAG  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAATATGTTCACATTGGACTTTTACTCAGATATTTATAAGAGAG  282

seq1  TCATCTTGTCTATAGAGAAATGAATGGATTTGTACATTGTCATTATAAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGTCTATAGAGAAATGAATGGATTTGTACATTGTCATTATAAGA  332

seq1  AAAGCGTATGAGACTAGGAGAAATTATCTCTGTAAGTCCCCCATATGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGTATGAGACTAGGAGAAATTATCTCTGTAAGTCCCCCATATGTGG  382

seq1  AACCTAGGGAAACAGGAATGAAAGCAGAGAGGGTCCATTAAGGAAGAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGGGAAACAGGAATGAAAGCAGAGAGGGTCCATTAAGGAAGAATA  432

seq1  GAGCCAGCAGGAGACATAGAATGCCATTGTAAGGTGGATGAAGATGCTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCAGGAGACATAGAATGCCATTGTAAGGTGGATGAAGATGCTCA  482

seq1  GAGTACACTACATTAATATATGAAAATATTTCTGTTAAACAATTATTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACTACATTAATATATGAAAATATTTCTGTTAAACAATTATTTTC  532

seq1  TACATTCATTATTCACTAAAATTTATATCTGTAAAATTTTCATTATATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCATTATTCACTAAAATTTATATCTGTAAAATTTTCATTATATAT  582

seq1  TAGATGCACAATAAATGGTTCCTTTGTCTGATAAAAATAATGCACTTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCACAATAAATGGTTCCTTTGTCTGATAAAAATAATGCACTTCCT  632

seq1  TTTTCCCTCTTACCTGGTATAAATATTTGCTTCGATTCTGAAAATTCAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCTTACCTGGTATAAATATTTGCTTCGATTCTGAAAATTCAGG  682

seq1  GTGTTAGACATCAATCCATTTAATGAAATTCCCCTCCATTTTTAATAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGACATCAATCCATTTAATGAAATTCCCCTCCATTTTTAATAATA  732

seq1  TGTACAAATACTCAATCATTAAATAAAATGGGAAAACCCACTGATTCATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAATACTCAATCATTAAATAAAATGGGAAAACCCACTGATTCATC  782

seq1  ACAGAAGAGATATTCTGTCTGCTAGGCAATCTACGGCATAGTATTTTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAGATATTCTGTCTGCTAGGCAATCTACGGCATAGTATTTTGTT  832

seq1  GTTTTTCCAGGTCAAACACAAAGAGGAAGATTCATATTCCCATTTCTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCAGGTCAAACACAAAGAGGAAGATTCATATTCCCATTTCTATT  882

seq1  GCATGGAGGAAAGATATGCAAGTGCAGATCATGTGGCCTATGCTGTTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGGAAAGATATGCAAGTGCAGATCATGTGGCCTATGCTGTTTCT  932

seq1  TCCCTCAGCAAGAGCTACATCTACCTTGACACAGAGACCAGCAGCATCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGCAAGAGCTACATCTACCTTGACACAGAGACCAGCAGCATCTT  982

seq1  GCCCTGCAACCAGATTCACACAGTTCAGGCACATTTTATTCTGAAGTGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCAACCAGATTCACACAGTTCAGGCACATTTTATTCTGAAGTGGG  1032

seq1  ACTTTGGAGTGCTGAAAGAGCTCGTTTTCTACTACCTGGTGAGTACTGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAGTGCTGAAAGAGCTCGTTTTCTACTACCTGGTGAGTACTGGC  1082

seq1  TCCAAATTGAAACAACAAACAAACAAACAGCAAACAAACAACAACAAAAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTGAAACAACAAACAAACAAACAGCAAACAAACAACAACAAAAC  1132

seq1  AAAACAAAACCAAAGAATTC  1168
      ||||||||||||||||||||
seq2  AAAACAAAACCAAAGAATTC  1152