BAC Information

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BAC

Clone NameB6Ng01-188J16
Chromosome6 (Build37)
Map Location 64,256,749 - 64,468,724
singlet/doubletdoublet
Overlap geneGrid2
Upstream genenone
Downstream geneAtoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188J16.bB6Ng01-188J16.g
ACCGA012863GA012864
length1,0871,193
definitionB6Ng01-188J16.b B6Ng01-188J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,256,749 - 64,257,848)(64,467,545 - 64,468,724)
sequence
gaattcccttaaaccattctcaagggatatataagataaaaaaaatgccc
ttacttccctggattacttttggtcagagtctccatcacagcactagaaa
gcacaccaaagcaccacatgcaagaacttgtttacggctgtgttccatat
agtccacataagattttttggtatcattgttttccatttctctatcaagt
aggcttataggaagggaagatattcatttatttattgtttaccactttac
aattagcttgtatttggaattagcactcaattcataaataaataattgag
gttttgacatttctctatagtgttcattgatttggttaaatatatcatta
ttctaaaatacttttaaatttttatttggagtttgatttcaattcttgcc
tgtatctttagtatatccaattagccacaatttgtgtttattaaatgttt
ctgtatcctgtcaagaaatacttattgtcataattttgatcactaatttt
tttataatatcataatgagcacatggacatatcagctagagtttataaat
atcactgtcaatctggagtcaaaagtttctgaggtcttttcagatgagcc
tctggtttctgtcatctggtacagcccatctctgcaccgaagctgttgtg
cattttcctccagataatggacctctaaaagttatctgccctggtggcct
ttacaaatgcttcagagttcactgtgcactgcacaaacgctactgtgcac
ttctggctgtagtctctggaaagcagtcaggagcagcaatgagctgaacc
ttggaggaatcacctaggagcctacagaacctttcatccccagttataga
atactactgttatttcaaattctcatgttcaaaagtaaattttgctcatt
ctcctttagattctaatgtcatgtaaaatgtggcctttttgaaagcggtg
actaaatcacagatttcatttttaaaaatgaatattttgcacactgatag
tttactcaaactaaagagtttattttcacttaatatgagcacaaatagaa
atcagaatatatatacattgagtggttgtgtgtgtgt

gaattccacctgcctctgcctctgcctctgcctcccaggtgctgggatta
aaggcgtgcgccaccactgcctggcttgtgttctacttcttaacaagctg
cttcaagctccaactgccttgacttccacactatgatgggctgtaccata
acctaaaaataaacctttcttcccagaagttgtttggtcagggtattttc
ccaaactacctgaaaaaatattaagaatctgcttaatcctatttaactta
aatttaaagtcacaagaatctaatagctaccatatttggcacatcaaatt
gaaggcattttcttttaatctgagacaaggcattgtgagaatgttatcta
tagcgttgaatttacaacagtctaattttaagtggatataattatctcca
tgtactctaagagcacccaaaccatatttattttttaatgaatgattcca
tcaacaatttaggtgaatgggttgctgcaggctagagcagttgcagaagg
atgaggtaaaaggaaactcaattttgactattgctccatcctgaaaatat
agtgcccatatcaaatcacatatccctaaaaaacaaatgaaaaaaatctt
ctataatgaagtaaaaattaatctatcagctctgggactagaaattggtg
tgttggtgagctcacttgctatggcaggtgtgaaattactgcacttggca
ttttcccattgttaatttgttgctttttggaaataacacctgctcacaga
ctattgaacattacatatgaactggagttatacacaattgtgagttatct
ggtatgatagtggaaactgaagctgattttaataataagcactttttaat
ccctaagccatctctctagccttggtttgaaacttttcaaagctatacag
gctttgaaaaaatgcattcccaagcttctgagagtatactactgtcaacc
cgacaacccccttcgcacgcacacactcctcttgaaaaataaataaatct
gtgcatgacaaaaacaggatagaggaaatttaggtcacaaagaagatctc
aataggatgcaggaggtactcttgggcttgagaagaagggttaaatacca
ctaaagacctatagcggaaaatataacacacgagtagtacagtaataaag
ggaatcttaagaaatgtgccaccgatataacaatattaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_64256749_64257848
seq2: B6Ng01-188J16.b_49_1135

seq1  GAATTCCCTTAAACCATTCTCAAGGGATATATAAGATAAAAAAAATGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTAAACCATTCTCAAGGGATATATAAGATAAAAAAAATGCCC  50

seq1  TTACTTCCCTGGATTACTTTTGGTCAGAGTCTCCATCACAGCACTAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCCTGGATTACTTTTGGTCAGAGTCTCCATCACAGCACTAGAAA  100

seq1  GCACACCAAAGCACCACATGCAAGAACTTGTTTACGGCTGTGTTCCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCAAAGCACCACATGCAAGAACTTGTTTACGGCTGTGTTCCATAT  150

seq1  AGTCCACATAAGATTTTTTGGTATCATTGTTTTCCATTTCTCTATCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACATAAGATTTTTTGGTATCATTGTTTTCCATTTCTCTATCAAGT  200

seq1  AGGCTTATAGGAAGGGAAGATATTCATTTATTTATTGTTTACCACTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATAGGAAGGGAAGATATTCATTTATTTATTGTTTACCACTTTAC  250

seq1  AATTAGCTTGTATTTGGAATTAGCACTCAATTCATAAATAAATAATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTTGTATTTGGAATTAGCACTCAATTCATAAATAAATAATTGAG  300

seq1  GTTTTGACATTTCTCTATAGTGTTCATTGATTTGGTTAAATATATCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACATTTCTCTATAGTGTTCATTGATTTGGTTAAATATATCATTA  350

seq1  TTCTAAAATACTTTTAAATTTTTATTTGGAGTTTGATTTCAATTCTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATACTTTTAAATTTTTATTTGGAGTTTGATTTCAATTCTTGCC  400

seq1  TGTATCTTTAGTATATCCAATTAGCCACAATTTGTGTTTATTAAATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTTAGTATATCCAATTAGCCACAATTTGTGTTTATTAAATGTTT  450

seq1  CTGTATCCTGTCAAGAAATACTTATTGTCATAATTTTGATCACTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCCTGTCAAGAAATACTTATTGTCATAATTTTGATCACTAATTTT  500

seq1  TTTATAATATCATAATGAGCACATGGACATATCAGCTAGAGTTTATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATATCATAATGAGCACATGGACATATCAGCTAGAGTTTATAAAT  550

seq1  ATCACTGTCAATCTGGAGTCAAAAGTTTCTGAGGTCTTTTCAGATGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTCAATCTGGAGTCAAAAGTTTCTGAGGTCTTTTCAGATGAGCC  600

seq1  TCTGGTTTCTGTCATCTGGTACAGCCCATCTCTGCACCGAAGCTGTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTCTGTCATCTGGTACAGCCCATCTCTGCACCGAAGCTGTTGTG  650

seq1  CATTTTCCTCCAGATAATGGACCTCTAAAAGTTATCTGCCCTGGTGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTCCAGATAATGGACCTCTAAAAGTTATCTGCCCTGGTGGCCT  700

seq1  TTACAAATGCTTCAGAGTTCACTGTGCACTGCACAAACGCTACTGTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGCTTCAGAGTTCACTGTGCACTGCACAAACGCTACTGTGCAC  750

seq1  TTCTGGCTGTAGTCTCTGGAAAGCAGTCAGGAGCAGCAATGAGCTGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTGTAGTCTCTGGAAAGCAGTCAGGAGCAGCAATGAGCTGAACC  800

seq1  TTGGAGGAATCACCTAGGAGCCTACAGAACCTTTCATCCCCAGTTATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAATCACCTAGGAGCCTACAGAACCTTTCATCCCCAGTTATAGA  850

seq1  ATACTACTGTTATTTCAAATTCTCATGTTCAAAAGTAAATTTTGCTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTGTTATTTCAAATTCTCATGTTCAAAAGTAAATTTTGCTCATT  900

seq1  CTCCTTTAGATTCTAATGTCATGTAAAATGTGGCCTTTTTGAAAGCGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAGATTCTAATGTCATGTAAAATGTGGCCTTTTTGAAAGCGGTG  950

seq1  ACTAAAATCACAGATTTCATTTTTAAAAATGAAATATTTTGCACACTGAT  1000
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACT-AAATCACAGATTTCATTTTTAAAAATG-AATATTTTGCACACTGAT  998

seq1  AGTTTTACCTCCAAACTAAAGAGTTTTATTTTTCACTTAAATAATTGAGC  1050
      || |||||   |||||||||||||||   ||||||||| ||||  |||||
seq2  AG-TTTAC--TCAAACTAAAGAGTTT--ATTTTCACTT-AATA--TGAGC  1040

seq1  ACAAAATAGAAATCAGAAATAATATATA-ACATT-TGAGGTTGTGTGTGT  1098
      || |||||||||||||    |||||||| |||||  | ||||||||||||
seq2  AC-AAATAGAAATCAG----AATATATATACATTGAGTGGTTGTGTGTGT  1085

seq1  GT  1100
      ||
seq2  GT  1087


seq1: chr6_64467545_64468724
seq2: B6Ng01-188J16.g_70_1262 (reverse)

seq1  TTCTCTTAATATTGTTAATTTGGTGG--CATTTCCTTAGATCTCCTTTAA  48
      |||| ||||||||||||  | |||||  |||||| | ||||  |||||| 
seq2  TTCT-TTAATATTGTTATATCGGTGGCACATTTCTTAAGATTCCCTTTA-  48

seq1  TTAATTGTCCTAAT-GTGT-TTAT-TTTTCCGCTATAGTCTTTTAGGTGT  95
       | | ||| ||| | |||| |||| |||||||||||||   |||||  ||
seq2  -TTACTGTACTACTCGTGTGTTATATTTTCCGCTATAGGTCTTTAGTGGT  97

seq1  ATTT-ACCCTTCTCTTCAA--CCCAGAGTACTTCTTGCATCCTATTGAGA  142
      |||| ||||||||  ||||  || ||||||| || |||||||||||||||
seq2  ATTTAACCCTTCTTCTCAAGCCCAAGAGTACCTCCTGCATCCTATTGAGA  147

seq1  TC-TCTTTGTGACCTAAA-TTCCTCTAATCTGTTTTTGTCATGCACAGAT  190
      || ||||||||||||||| ||||||||  |||||||||||||||||||||
seq2  TCTTCTTTGTGACCTAAATTTCCTCTATCCTGTTTTTGTCATGCACAGAT  197

seq1  TTATTTATTTTTCAAGAGGAGTGTGTGCGTGCGAGGGGGGTTGTCGGGTT  240
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTATTTATTTTTCAAGAGGAGTGTGTGCGTGCGAAGGGGGTTGTCGGGTT  247

seq1  GACAGTAGTATACTCTCAG-AGCTT-GGAATGCATTTTTTC-AAGCCTGT  287
      ||||||||||||||||||| ||||| ||||||||||||||| ||||||||
seq2  GACAGTAGTATACTCTCAGAAGCTTGGGAATGCATTTTTTCAAAGCCTGT  297

seq1  ATAGCTTTG-AAAGTTTC-AACCAAGGCTAGAGAGATGGCTTAGGGATT-  334
      ||||||||| |||||||| |||||||||||||||||||||||||||||| 
seq2  ATAGCTTTGAAAAGTTTCAAACCAAGGCTAGAGAGATGGCTTAGGGATTA  347

seq1  AAAAGTGCTTATTATTAAAATCAGCTTCAGTTTCCACTATCATACCAGAT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCTTATTATTAAAATCAGCTTCAGTTTCCACTATCATACCAGAT  397

seq1  AACTCACAATTGTGTATAACTCCAGTTCATATGTAATGTTCAATAGTCTG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAATTGTGTATAACTCCAGTTCATATGTAATGTTCAATAGTCTG  447

seq1  TGAGCAGGTGTTATTTCCAAAAAGCAACAAATTAACAATGGGAAAATGCC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGTGTTATTTCCAAAAAGCAACAAATTAACAATGGGAAAATGCC  497

seq1  AAGTGCAGTAATTTCACACCTGCCATAGCAAGTGAGCTCACCAACACACC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAGTAATTTCACACCTGCCATAGCAAGTGAGCTCACCAACACACC  547

seq1  AATTTCTAGTCCCAGAGCTGATAGATTAATTTTTACTTCATTATAGAAGA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAGTCCCAGAGCTGATAGATTAATTTTTACTTCATTATAGAAGA  597

seq1  TTTTTTTCATTTGTTTTTTAGGGATATGTGATTTGATATGGGCACTATAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCATTTGTTTTTTAGGGATATGTGATTTGATATGGGCACTATAT  647

seq1  TTTCAGGATGGAGCAATAGTCAAAATTGAGTTTCCTTTTACCTCATCCTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGATGGAGCAATAGTCAAAATTGAGTTTCCTTTTACCTCATCCTT  697

seq1  CTGCAACTGCTCTAGCCTGCAGCAACCCATTCACCTAAATTGTTGATGGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTGCTCTAGCCTGCAGCAACCCATTCACCTAAATTGTTGATGGA  747

seq1  ATCATTCATTAAAAAATAAATATGGTTTGGGTGCTCTTAGAGTACATGGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCATTAAAAAATAAATATGGTTTGGGTGCTCTTAGAGTACATGGA  797

seq1  GATAATTATATCCACTTAAAATTAGACTGTTGTAAATTCAACGCTATAGA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTATATCCACTTAAAATTAGACTGTTGTAAATTCAACGCTATAGA  847

seq1  TAACATTCTCACAATGCCTTGTCTCAGATTAAAAGAAAATGCCTTCAATT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCTCACAATGCCTTGTCTCAGATTAAAAGAAAATGCCTTCAATT  897

seq1  TGATGTGCCAAATATGGTAGCTATTAGATTCTTGTGACTTTAAATTTAAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGCCAAATATGGTAGCTATTAGATTCTTGTGACTTTAAATTTAAG  947

seq1  TTAAATAGGATTAAGCAGATTCTTAATATTTTTTCAGGTAGTTTGGGAAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGGATTAAGCAGATTCTTAATATTTTTTCAGGTAGTTTGGGAAA  997

seq1  ATACCCTGACCAAACAACTTCTGGGAAGAAAGGTTTATTTTTAGGTTATG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGACCAAACAACTTCTGGGAAGAAAGGTTTATTTTTAGGTTATG  1047

seq1  GTACAGCCCATCATAGTGTGGAAGTCAAGGCAGTTGGAGCTTGAAGCAGC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCCCATCATAGTGTGGAAGTCAAGGCAGTTGGAGCTTGAAGCAGC  1097

seq1  TTGTTAAGAAGTAGAACACAAGCCAGGCAGTGGTGGCGCACGCCTTTAAT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGAAGTAGAACACAAGCCAGGCAGTGGTGGCGCACGCCTTTAAT  1147

seq1  CCCAGCACCTGGGAGGCAGAGGCAGAGGCAGAGGCAGGTGGAATTC  1180
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCTGGGAGGCAGAGGCAGAGGCAGAGGCAGGTGGAATTC  1193


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