BAC Information

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BAC

Clone NameB6Ng01-189H07
Chromosome6 (Build37)
Map Location 29,711,788 - 29,830,030
singlet/doubletdoublet
Overlap gene4631427C17Rik
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
Downstream geneD330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189H07.bB6Ng01-189H07.g
ACCGA013473GA013474
length1,2001,127
definitionB6Ng01-189H07.b B6Ng01-189H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,711,788 - 29,712,966)(29,828,904 - 29,830,030)
sequence
gaattcaaacacaaggagagcttgttggttttgcttctttaaaataccag
cagaagattgggaactgaattcaagtgactagattatgtagcaaggtctg
tggagaaaaggcagtgagagccacagacctgagggtactgtggagtgctg
atctggcttaggacgaatagtcccttcttcagctgtgtgtgtgatgggga
caacagggttttaatcaagccagattttccagaaagaggagaaatggaat
tctggttttatcccaggtgacttgtagatatgatataccactgaaagcta
acacccagggctggctttgcggggcactcttctgagctctccacagaatt
cagctcaggcaatctcagagccctgccaggttctgttctacccctcaaga
cactgaggcatagaaggcctaatgggctgctccaaactattcagctactg
gtaatgctggcatccaggcatggccttctggtttcatggtgacagggatc
taaccatggtgctctttgcatggaatcaagttcagcaaagtaaagcaaag
tgacttgcacacaaccccatagccagaaagctgcacacactggcctagta
tttctgattgcgaagtcctggctctgcagcttggtggaaattcattctta
gatttctccattttgtgtttcctcaggctaccccctcctcggcacttgtc
agtgttggttactatttttctgaaattaaaaaaaaaatgctacggttttc
ctcatttcatttccatgaacatttaactgtttcttttccacgttctgttt
cttcttccttagaaggattgcttacgtaaaggataaactactgaggtcag
tctgggccttcaaacagctgaggaacctgtatggttgcagtgacagattg
tgggcactagaggacagtccctaactctgtttttctgtgcatctgcatgc
aggctcaaactgcagctggatgtccaggtgttgcgacaccagggcaaaca
gggcaaccttacaggattttcttgttaggaggtggcaggaagtcactctg
aacaatgatcatcattctctaaaaggtttttgaattccaatttctaagga
aacacttccaaggttcaaggagagatgcccaatttttggcttctgccttg
ttcctgagacctacttgcctacaagccctgaccttctggccttacctggg

gaattcacagagtacactaaaccagtgctctatcactgaacttcatccct
agcccaacttattcattcattcactcattcattcattcactcattattta
ttcatgcaggtagttttgagacctcttaccatggattccaggccatcctc
aaacttgtggccattctcatgtctcagccttctgagggctgtgttggcag
gtgtgagccatgtctgggattgcaggtgtgagccatggctgtgatagcag
gtgtgagccatggctgtgataacaggtgtgagccatggctgtgatggcag
gtgtgagccatggctgtgatgacaggtgtgagccatggctgtgatgacag
gtgtgagccatggctgtgatgccaggtatgagccatggctgtgatgccag
gtgtgagccatgatctccaattttctttttgaaaatttttattttgagac
aagatctactacattctccaagcaagtcctgaactatggtactttggtct
caaccttcctacaaagctgggatgacagagatgtcactgtgcctggcctc
aaatatgggtttagcagatatgacattttatcaaaccagtcttttaatta
tcatttatgtaagtatataaccttttctatcacaatataaggttgtgaga
gcaaagatacttttaattgtcaatagtcatgtgctaggaaaaaaagacaa
agaaatacatgcctgcttacaattcactggatatatacttaatattttta
taattttctatcatatataaggagtaaatttttataaattaattcaagaa
ctaatgaaatatcaagagtactagtcacaggagagagatgtgtgttctgt
aggctttttcctggtatctcccaagatctcagaagtagtttttggtacca
aactgtgtattacacagagggaaaaggagaagctgacagattccaaattt
ttctttcttttttgtccttcagcattagtggacactttaatcaaattaat
ctggccaggccaagttcttttttactgctgaagcagacaactaacattaa
ggcaaggcaagctatttacctggaaaactgcaggactgtaaatccttgca
caactatggctccgagttccatattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29711788_29712966
seq2: B6Ng01-189H07.b_43_1242

seq1  GAATTCAAACACAAGGAGAGCTTGTTGGTTTTGCTTCTTTAAAATACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACACAAGGAGAGCTTGTTGGTTTTGCTTCTTTAAAATACCAG  50

seq1  CAGAAGATTGGGAACTGAATTCAAGTGACTAGATTATGTAGCAAGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATTGGGAACTGAATTCAAGTGACTAGATTATGTAGCAAGGTCTG  100

seq1  TGGAGAAAAGGCAGTGAGAGCCACAGACCTGAGGGTACTGTGGAGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAAGGCAGTGAGAGCCACAGACCTGAGGGTACTGTGGAGTGCTG  150

seq1  ATCTGGCTTAGGACGAATAGTCCCTTCTTCAGCTGTGTGTGTGATGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTAGGACGAATAGTCCCTTCTTCAGCTGTGTGTGTGATGGGGA  200

seq1  CAACAGGGTTTTAATCAAGCCAGATTTTCCAGAAAGAGGAGAAATGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGTTTTAATCAAGCCAGATTTTCCAGAAAGAGGAGAAATGGAAT  250

seq1  TCTGGTTTTATCCCAGGTGACTTGTAGATATGATATACCACTGAAAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTTATCCCAGGTGACTTGTAGATATGATATACCACTGAAAGCTA  300

seq1  ACACCCAGGGCTGGCTTTGCGGGGCACTCTTCTGAGCTCTCCACAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGGGCTGGCTTTGCGGGGCACTCTTCTGAGCTCTCCACAGAATT  350

seq1  CAGCTCAGGCAATCTCAGAGCCCTGCCAGGTTCTGTTCTACCCCTCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGCAATCTCAGAGCCCTGCCAGGTTCTGTTCTACCCCTCAAGA  400

seq1  CACTGAGGCATAGAAGGCCTAATGGGCTGCTCCAAACTATTCAGCTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGCATAGAAGGCCTAATGGGCTGCTCCAAACTATTCAGCTACTG  450

seq1  GTAATGCTGGCATCCAGGCATGGCCTTCTGGTTTCATGGTGACAGGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCTGGCATCCAGGCATGGCCTTCTGGTTTCATGGTGACAGGGATC  500

seq1  TAACCATGGTGCTCTTTGCATGGAATCAAGTTCAGCAAAGTAAAGCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGGTGCTCTTTGCATGGAATCAAGTTCAGCAAAGTAAAGCAAAG  550

seq1  TGACTTGCACACAACCCCATAGCCAGAAAGCTGCACACACTGGCCTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCACACAACCCCATAGCCAGAAAGCTGCACACACTGGCCTAGTA  600

seq1  TTTCTGATTGCGAAGTCCTGGCTCTGCAGCTTGGTGGAAATTCATTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATTGCGAAGTCCTGGCTCTGCAGCTTGGTGGAAATTCATTCTTA  650

seq1  GATTTCTCCATTTTGTGTTTCCTCAGGCTACCCCCTCCTCGGCACTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCCATTTTGTGTTTCCTCAGGCTACCCCCTCCTCGGCACTTGTC  700

seq1  AGTGTTGGTTACTA-TTTTCTGAAATTAAAAAAAAAATGCTACGGTTTTC  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGTTACTATTTTTCTGAAATTAAAAAAAAAATGCTACGGTTTTC  750

seq1  CTCATTTCATTTCCATGAACATTTAACTGTTTCTTTTCCACGTTCTGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCATTTCCATGAACATTTAACTGTTTCTTTTCCACGTTCTGTTT  800

seq1  CTTCTTCCTTAGAAGGATTGCTTACGTAAAGGATAAACTACTGAGGTCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCTTAGAAGGATTGCTTACGTAAAGGATAAACTACTGAGGTCAG  850

seq1  TCTGGGCCTTCAAACAGCTGAGGAACCTGTATGGTTGCAGTGACAGATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCTTCAAACAGCTGAGGAACCTGTATGGTTGCAGTGACAGATTG  900

seq1  TGGGCACTAGAGGACAGT-CCTAACTCTG-TTTTCTGTGCATCTGCATGC  947
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  TGGGCACTAGAGGACAGTCCCTAACTCTGTTTTTCTGTGCATCTGCATGC  950

seq1  AGGCTCAAACTGCAGCTGGATGTCCA-GTGTTGCGACACCCAGGCAAACA  996
      |||||||||||||||||||||||||| |||||||||||||  ||||||||
seq2  AGGCTCAAACTGCAGCTGGATGTCCAGGTGTTGCGACACCAGGGCAAACA  1000

seq1  -GGCAACCTTACAGGA-TTTCT--GTAGGA-GTGGCA-GAAGTCACTCTG  1040
       ||||||||||||||| |||||   ||||| |||||| ||||||||||||
seq2  GGGCAACCTTACAGGATTTTCTTGTTAGGAGGTGGCAGGAAGTCACTCTG  1050

seq1  AACAATGATCATCATTTCTTCTAAAAG--TTTTGAA-TCCAATTCCTAAG  1087
      ||||||||||||||||   ||||||||  ||||||| ||||||| |||||
seq2  AACAATGATCATCATT--CTCTAAAAGGTTTTTGAATTCCAATTTCTAAG  1098

seq1  GAAACACTTCCAA-GTTCA---AGAGATGCC--AATTTTGGCTTCCTGC-  1130
      ||||||||||||| |||||   |||||||||  | ||||||||| |||| 
seq2  GAAACACTTCCAAGGTTCAAGGAGAGATGCCCAATTTTTGGCTT-CTGCC  1147

seq1  -TG-TCCTGAGAACTACTTCCCCACCAGCCCTG-CCTTCT-GCCTTACCT  1176
       || |||||||| |||||| || || ||||||| |||||| |||||||||
seq2  TTGTTCCTGAGACCTACTTGCCTACAAGCCCTGACCTTCTGGCCTTACCT  1197

seq1  GGG  1179
      |||
seq2  GGG  1200

seq1: chr6_29828904_29830030
seq2: B6Ng01-189H07.g_63_1189 (reverse)

seq1  GTAATATGGAACACCGGAGCCATAGTTTGTGCAGGGTTTTCCAGTTCCTG  50
      ||||||||||||  ||||||||||| ||||||| || ||| ||| |||||
seq2  GTAATATGGAAC-TCGGAGCCATAG-TTGTGCAAGGATTTACAG-TCCTG  47

seq1  CAGGTTTTCCA-GTAAATGGCTTGCCCTGCTTTAATGTTTAGTTTGTCTG  99
      || |||||||| |||||| ||||||| ||| |||||| |||| |||||||
seq2  CA-GTTTTCCAGGTAAATAGCTTGCCTTGCCTTAATG-TTAG-TTGTCTG  94

seq1  CTTCAGCAGTAAAAAAG-ACTTGGCCTGG-CAGATTAA-TTGATTAAAGT  146
      ||||||||||||||||| ||||||||||| |||||||| |||||||||||
seq2  CTTCAGCAGTAAAAAAGAACTTGGCCTGGCCAGATTAATTTGATTAAAGT  144

seq1  GTCCACTAATGCTTGAAGGAC-AAAAAGAAAGAAAAATTTGGATTCTGTC  195
      |||||||||||| |||||||| ||||||||||||||||||||| ||||||
seq2  GTCCACTAATGC-TGAAGGACAAAAAAGAAAGAAAAATTTGGAATCTGTC  193

seq1  AGCTTTCTCTTTTCCCTCTGTGTAATACACAGTTTGGTACC-AAAACTAC  244
      |||||   ||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCTTCTCCTTTTCCCTCTGTGTAATACACAGTTTGGTACCAAAAACTAC  243

seq1  TTCTGAGATCTTGGGAGATACCAGG-AAAAGCCTACAGAACACACATCTC  293
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTGAGATCTTGGGAGATACCAGGAAAAAGCCTACAGAACACACATCTC  293

seq1  TCTCCTGTGACTAGTACTCTTGATATTTCATTAGTTCTTGAATTAATTTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGACTAGTACTCTTGATATTTCATTAGTTCTTGAATTAATTTA  343

seq1  TAAAAATTTACTCCTTATATATGATAGAAAATTATAAAAATATTAAGTAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTACTCCTTATATATGATAGAAAATTATAAAAATATTAAGTAT  393

seq1  ATATCCAGTGAATTGTAAGCAGGCATGTATTTCTTTGTCTTTTTTTCCTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGTGAATTGTAAGCAGGCATGTATTTCTTTGTCTTTTTTTCCTA  443

seq1  GCACATGACTATTGACAATTAAAAGTATCTTTGCTCTCACAACCTTATAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGACTATTGACAATTAAAAGTATCTTTGCTCTCACAACCTTATAT  493

seq1  TGTGATAGAAAAGGTTATATACTTACATAAATGATAATTAAAAGACTGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAGAAAAGGTTATATACTTACATAAATGATAATTAAAAGACTGGT  543

seq1  TTGATAAAATGTCATATCTGCTAAACCCATATTTGAGGCCAGGCACAGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAATGTCATATCTGCTAAACCCATATTTGAGGCCAGGCACAGTG  593

seq1  ACATCTCTGTCATCCCAGCTTTGTAGGAAGGTTGAGACCAAAGTACCATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTGTCATCCCAGCTTTGTAGGAAGGTTGAGACCAAAGTACCATA  643

seq1  GTTCAGGACTTGCTTGGAGAATGTAGTAGATCTTGTCTCAAAATAAAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGACTTGCTTGGAGAATGTAGTAGATCTTGTCTCAAAATAAAAAT  693

seq1  TTTCAAAAAGAAAATTGGAGATCATGGCTCACACCTGGCATCACAGCCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAAGAAAATTGGAGATCATGGCTCACACCTGGCATCACAGCCAT  743

seq1  GGCTCATACCTGGCATCACAGCCATGGCTCACACCTGTCATCACAGCCAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATACCTGGCATCACAGCCATGGCTCACACCTGTCATCACAGCCAT  793

seq1  GGCTCACACCTGTCATCACAGCCATGGCTCACACCTGCCATCACAGCCAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACACCTGTCATCACAGCCATGGCTCACACCTGCCATCACAGCCAT  843

seq1  GGCTCACACCTGTTATCACAGCCATGGCTCACACCTGCTATCACAGCCAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACACCTGTTATCACAGCCATGGCTCACACCTGCTATCACAGCCAT  893

seq1  GGCTCACACCTGCAATCCCAGACATGGCTCACACCTGCCAACACAGCCCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACACCTGCAATCCCAGACATGGCTCACACCTGCCAACACAGCCCT  943

seq1  CAGAAGGCTGAGACATGAGAATGGCCACAAGTTTGAGGATGGCCTGGAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCTGAGACATGAGAATGGCCACAAGTTTGAGGATGGCCTGGAAT  993

seq1  CCATGGTAAGAGGTCTCAAAACTACCTGCATGAATAAATAATGAGTGAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTAAGAGGTCTCAAAACTACCTGCATGAATAAATAATGAGTGAAT  1043

seq1  GAATGAATGAGTGAATGAATGAATAAGTTGGGCTAGGGATGAAGTTCAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGAGTGAATGAATGAATAAGTTGGGCTAGGGATGAAGTTCAGT  1093

seq1  GATAGAGCACTGGTTTAGTGTACTCTGTGAATTC  1127
      ||||||||||||||||||||||||||||||||||
seq2  GATAGAGCACTGGTTTAGTGTACTCTGTGAATTC  1127