BAC Information

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BAC

Clone NameB6Ng01-189N24
Chromosome10 (Build37)6 (Build37)
Map Location 44,704,265 - 44,704,38345,690,987 - 45,692,056
singlet/doubletsingletsinglet
Overlap geneEG215974
Upstream geneAim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529
Downstream genePrep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189N24.bB6Ng01-189N24.g
ACCGA013779GA013780
length9021,071
definitionB6Ng01-189N24.b B6Ng01-189N24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,704,265 - 44,704,383)(45,690,987 - 45,692,056)
sequence
gaattctcatgggaccctttcagccaacttctcagtgacatgtagcacag
tcctgaactggaaacttcatttggtgacacaacatggaaagtcaatactc
ttactcattatctttcaatttcattcagatcccttccatacatgtgtgtg
tgtgtgtttggtgtgcatgtgcccatattttattaggaagatgttactat
attaggttataatgctaattttacttggcctttaattttagctgtctctc
cccatattccctcctgtatccccatctcctctcatccttcccactagagt
cattcattctagcacctaaggagctctttctgttgtcccagtccattact
ctgaacctaacatttgtggttctacatattgtagctaggttctcattgac
ataagagctaatatccatagataagcaaatgcatgatatttttgtctttc
tgggtctgagttttcaggatatgtcttttttaatctatctttttgaatta
tctttaaatattgttttcaagttccattttattttctatgaatctcatgg
ttttatttactttttttttcccttgcagcttttaatattcttactttgct
ctgtatatttagtatttgcattatttgtgaccagcttatttgatatccta
tgtatttcttatgcatcgattgatatctccttctttaggttagggaattt
ttcttctatgtctttgttgaaaatattttctgtgatcctttctctctctt
tctctctctctctctctctctttttttttttttttttctttttttttttt
ttaggttttgggtcatttcatagtgtaacagattacctgaattgtttgta
tcaaggttgttttgcttggtttgggtttttggttttttggttgttttttt
tt

gaattccatttttacccctttccccaccatgcaccctgctctctgtctct
cagtcctctccctctcctttcttatctacttactttcacctcttagtatt
gtgtgtgaccctctgactttcattatagtttcttgcctgactatggatgg
aaggctattttaatgagcaagggtgacctatcagtggttacaagactgaa
caaaagagcatccccttctccaacaacctggagtcccctagagaaataga
ctgcttcatatgcctttcacccatctgttgagaaatgccaaaggcctgtt
gttctcaccagaggcagaggacagggagatgtacaatgcactttaaaata
cattttgactctgctctcctttccttgaagatttaattggtattttactg
aagaaattggatcacactttctagctcctgctaatgtaactctgaatagc
taatgccagcacttgagttgcatcaaagttatagtttttgtgctcactgt
caggtgccttgaataatatctccctcataagatctggttaacatccactc
tcaacactttggccttaggaagctttggggtatgcaaatgcagtttttag
aggtcacaatccgagcttcatggttatttagcactcctctgttctggata
tttcctggtgtctgaatgtatgaagggagagaaagaaaatgtttatgctg
acatattcaacatgactctaaattataatgtaaacgacatataatagaaa
tagcaggtcagtttacattatcctaaaggaaatggaaaaaaaatcataac
atgttatttattgtaagtatgattgcctttccagcagatgatataaaaca
caagataggtaagctttgtgagacaattcactcaatgataaaagagtgtc
agacttgaaatggaatataaacagcatttcagtatgagcccctttgagaa
tatctgattctctgtctgactatagcatgtccctgtgagtcagcacagga
gaatatgggcacaggagcacctgaatgccctatttgccaaatgattccag
tcactgattctgcataagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_44704265_44704383
seq2: B6Ng01-189N24.b_783_949

seq1  TCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      |||||||||||||| ||||||||||||||||||||| | | | | | | |
seq2  TCCTTTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTT  50

seq1  CTCTCTCTCTCCTTCT----------CTCTTTCCTT--------------  76
       ||| | | |  || |           || || | |              
seq2  TTCTTTTTTTTTTTTTTAGGTTTTGGGTCATTTCATAGTGTAACAGATTA  100

seq1  -CTG-------------------GTTTTTCTT--TTTGG--TTAGGCTTT  102
       |||                   ||||| |||  |||||  ||  | |||
seq2  CCTGAATTGTTTGTATCAAGGTTGTTTTGCTTGGTTTGGGTTTTTGGTTT  150

seq1  TTTGGTTGTTTTTTTTT  119
      |||||||||||||||||
seq2  TTTGGTTGTTTTTTTTT  167


seq1: chr6_45690987_45692056
seq2: B6Ng01-189N24.g_69_1139 (reverse)

seq1  TCTCTTTATGCAGAATTCAGTTGACTGGA--CCATTGGCAAATAGGCATT  48
      |||| |||||||||| |||| ||||||||  |  ||||||||||||   |
seq2  TCTC-TTATGCAGAA-TCAG-TGACTGGAATCATTTGGCAAATAGGGCAT  47

seq1  TCAGGTGCT-CTGTGCCCATATTCT-CTGTGCTGACTCACAGGGAACATG  96
      ||||||||| ||||||||||||||| |||||||||||||||||| |||||
seq2  TCAGGTGCTCCTGTGCCCATATTCTCCTGTGCTGACTCACAGGG-ACATG  96

seq1  CTATAGTCAGACAGAGAATCAGATATTCTCAAAGGGGCTCATACTGAAAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTCAGACAGAGAATCAGATATTCTCAAAGGGGCTCATACTGAAAT  146

seq1  GCTGTTTATATTCCATTTCAAGTCTGACACTCTTTTATCATTGAGTGAAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTATATTCCATTTCAAGTCTGACACTCTTTTATCATTGAGTGAAT  196

seq1  TGTCTCACAAAGCTTACCTATCTTGTGTTTTATATCATCTGCTGG-AAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTCTCACAAAGCTTACCTATCTTGTGTTTTATATCATCTGCTGGAAAGG  246

seq1  CAATCATACTTACAATAAATAACATGTTATGATTTTTTTTCCATTTCCTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATACTTACAATAAATAACATGTTATGATTTTTTTTCCATTTCCTT  296

seq1  TAGGATAATGTAAACTGACCTGCTATTTCTATTATATGTCGTTTACATTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAATGTAAACTGACCTGCTATTTCTATTATATGTCGTTTACATTA  346

seq1  TAATTTAGAGTCATGTTGAATATGTCAGCATAAACATTTTCTTTCTCTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAGAGTCATGTTGAATATGTCAGCATAAACATTTTCTTTCTCTCC  396

seq1  CTTCATACATTCAGACACCAGGAAATATCCAGAACAGAGGAGTGCTAAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATACATTCAGACACCAGGAAATATCCAGAACAGAGGAGTGCTAAAT  446

seq1  AACCATGAAGCTCGGATTGTGACCTCTAAAAACTGCATTTGCATACCCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAAGCTCGGATTGTGACCTCTAAAAACTGCATTTGCATACCCCA  496

seq1  AAGCTTCCTAAGGCCAAAGTGTTGAGAGTGGATGTTAACCAGATCTTATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCTAAGGCCAAAGTGTTGAGAGTGGATGTTAACCAGATCTTATG  546

seq1  AGGGAGATATTATTCAAGGCACCTGACAGTGAGCACAAAAACTATAACTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATATTATTCAAGGCACCTGACAGTGAGCACAAAAACTATAACTT  596

seq1  TGATGCAACTCAAGTGCTGGCATTAGCTATTCAGAGTTACATTAGCAGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAACTCAAGTGCTGGCATTAGCTATTCAGAGTTACATTAGCAGGA  646

seq1  GCTAGAAAGTGTGATCCAATTTCTTCAGTAAAATACCAATTAAATCTTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAGTGTGATCCAATTTCTTCAGTAAAATACCAATTAAATCTTCA  696

seq1  AGGAAAGGAGAGCAGAGTCAAAATGTATTTTAAAGTGCATTGTACATCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAGAGCAGAGTCAAAATGTATTTTAAAGTGCATTGTACATCTC  746

seq1  CCTGTCCTCTGCCTCTGGTGAGAACAACAGGCCTTTGGCATTTCTCAACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTCTGCCTCTGGTGAGAACAACAGGCCTTTGGCATTTCTCAACA  796

seq1  GATGGGTGAAAGGCATATGAAGCAGTCTATTTCTCTAGGGGACTCCAGGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTGAAAGGCATATGAAGCAGTCTATTTCTCTAGGGGACTCCAGGT  846

seq1  TGTTGGAGAAGGGGATGCTCTTTTGTTCAGTCTTGTAACCACTGATAGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGAAGGGGATGCTCTTTTGTTCAGTCTTGTAACCACTGATAGGT  896

seq1  CACCCTTGCTCATTAAAATAGCCTTCCATCCATAGTCAGGCAAGAAACTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGCTCATTAAAATAGCCTTCCATCCATAGTCAGGCAAGAAACTA  946

seq1  TAATGAAAGTCAGAGGGTCACACACAATACTAAGAGGTGAAAGTAAGTAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAGTCAGAGGGTCACACACAATACTAAGAGGTGAAAGTAAGTAG  996

seq1  ATAAGAAAGGAGAGGGAGAGGACTGAGAGACAGAGAGCAGGGTGCATGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGGAGAGGGAGAGGACTGAGAGACAGAGAGCAGGGTGCATGGT  1046

seq1  GGGGAAAGGGGTAAAAATGGAATTC  1070
      |||||||||||||||||||||||||
seq2  GGGGAAAGGGGTAAAAATGGAATTC  1071


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