BAC Information

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BAC

Clone NameB6Ng01-190E23
Chromosome6 (Build37)
Map Location 65,607,331 - 65,748,008
singlet/doubletdoublet
Overlap geneA930038C07Rik, LOC667160, Prdm5
Upstream geneGrid2, Atoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik
Downstream gene4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190E23.bB6Ng01-190E23.g
ACCGA014096GA014097
length1,0211,136
definitionB6Ng01-190E23.b B6Ng01-190E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,747,276 - 65,748,008)(65,607,331 - 65,608,242)
sequence
gaattcacagcagctacagtgcatagagtttgcacaagacagcccatcaa
aattcagtgatatatagaagagaggcgcatgggctgatgcctatctggga
gagttaatagttggtaagatctgtcaggtgagagaagtcattgtgtaggt
tatatagccactggctagctatttagtgcatagttccaagacccattccc
acacaggcagccctgggtaaacatatgaaggtatgtattacaatctattc
aagtttgtccctgactagatcacaaataaatgagactcagactatggtta
ttttatttggctttgacaattactaaagggtcacaattactaatctactc
ctggaactgcaggcctggctaccaccccagaggtgtaccccagatacttg
ctgtttctcttggacatgacctcatggttccgctcccctgattgcagctt
tctccctctctagttcttccttctcccttcaggttcactactgctaatcc
ctccaacaattggctgtagtcaatgttatttaacaatagttttaaatcag
ggaacaacgtttgcacaacaaaagcttgtaaacaatagaagatactccta
ggccaataccttgaagtatagaatttagcattacaatatatagcaacaga
ccaaactttaaaaaaggtggaatgggaacttggagggagaagggagaaca
ggtttagaagggggataaatgagagtagaggaccaaaaactgtcaacaaa
taaattaataataataaagagagaaggaaaggaaaagaagggaaagaaag
gactaaatacagcaaatattctggaagaagggctaagcttgaaacaggta
gctgtatcctttagaccttacaaactgtaactcattcaaagcattaatat
taggtacaaagtaaaataaagataatacaccagtcatcatgggactctaa
catcaccaagaataaagtacataaagttctgtaagcagcagagtaagaac
agtggagatgctactgtgtga
gaattctttgctatctacatgcatgtattggtctgccttacattttgcag
ttgagcttcaattgttgagactccattgaaagaaatgtaccaaaaaaaac
ttctagtggtgtgttgcagtttcttgccacttccaaggacttgggctgat
tggcagagtaatgtcagcagaggtaagacccataaaggatatgtgatgtt
tggagggcatataaaaagaacttggtgcacagtgatggaggctgggctag
gcttgcttatagagctagatgtgcaatgcttgttggtctcacatcttcac
tgatcttcacttcactgagagaagcacagctgagaacttctcctggcatt
cttgctggtccctcttgctgacttgtactgaggctggggcctggctgtct
ttgctaggttgtgccacagctgctgattcatggttgctatctcaattcta
cttaactggactgctggtgtagctgtaaagggtttgcaagtgtttggatc
tagctgcccctgctcacctatgaactaaactagcaatttccagacaacac
agacaggagttgttccaaagaacctttataaatagttccactccctgcac
cccacccccacccccaccccacgaccatcctttcttttccactatctctg
gtggatggtggactaaaagggttgttaaaaggtttaagaaccatcattaa
aaataggtgtttgaaaaaattaaagtaacagaccttgtttattagatcct
ctttatcttatatcatattcctgagaataatacagattaatcccaaatat
caatattataaaatctacccttatgtgttgtatgtgattataatattaca
gtgtatctaataataaaacacttttagaattttttagtctcatctatctc
cttttaactgggtatagtcacaaaataaaagttgttcaccagagtataac
atcaggttttattgtgcttctatattatgaaatcactacatgagactcat
ttcattacatgtcattatctcagatattttgtgttgagatatttaggatc
tccaatttttgcactttttaagttgtgatcatctttttgcaaataacatg
gcgtagagctcgaaaaaaatcaattccttctgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65747276_65748008
seq2: B6Ng01-190E23.b_45_777 (reverse)

seq1  GTCCTCTACTCTCATTTATCCCCCTTCTAAACCTGTTCTCCCTTCTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTACTCTCATTTATCCCCCTTCTAAACCTGTTCTCCCTTCTCCCT  50

seq1  CCAAGTTCCCATTCCACCTTTTTTAAAGTTTGGTCTGTTGCTATATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCCCATTCCACCTTTTTTAAAGTTTGGTCTGTTGCTATATATTG  100

seq1  TAATGCTAAATTCTATACTTCAAGGTATTGGCCTAGGAGTATCTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTAAATTCTATACTTCAAGGTATTGGCCTAGGAGTATCTTCTATT  150

seq1  GTTTACAAGCTTTTGTTGTGCAAACGTTGTTCCCTGATTTAAAACTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAAGCTTTTGTTGTGCAAACGTTGTTCCCTGATTTAAAACTATTG  200

seq1  TTAAATAACATTGACTACAGCCAATTGTTGGAGGGATTAGCAGTAGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAACATTGACTACAGCCAATTGTTGGAGGGATTAGCAGTAGTGAA  250

seq1  CCTGAAGGGAGAAGGAAGAACTAGAGAGGGAGAAAGCTGCAATCAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGGAGAAGGAAGAACTAGAGAGGGAGAAAGCTGCAATCAGGGGA  300

seq1  GCGGAACCATGAGGTCATGTCCAAGAGAAACAGCAAGTATCTGGGGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAACCATGAGGTCATGTCCAAGAGAAACAGCAAGTATCTGGGGTACA  350

seq1  CCTCTGGGGTGGTAGCCAGGCCTGCAGTTCCAGGAGTAGATTAGTAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGGTGGTAGCCAGGCCTGCAGTTCCAGGAGTAGATTAGTAATTG  400

seq1  TGACCCTTTAGTAATTGTCAAAGCCAAATAAAATAACCATAGTCTGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTTAGTAATTGTCAAAGCCAAATAAAATAACCATAGTCTGAGTC  450

seq1  TCATTTATTTGTGATCTAGTCAGGGACAAACTTGAATAGATTGTAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTTGTGATCTAGTCAGGGACAAACTTGAATAGATTGTAATACA  500

seq1  TACCTTCATATGTTTACCCAGGGCTGCCTGTGTGGGAATGGGTCTTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCATATGTTTACCCAGGGCTGCCTGTGTGGGAATGGGTCTTGGAA  550

seq1  CTATGCACTAAATAGCTAGCCAGTGGCTATATAACCTACACAATGACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCACTAAATAGCTAGCCAGTGGCTATATAACCTACACAATGACTTC  600

seq1  TCTCACCTGACAGATCTTACCAACTATTAACTCTCCCAGATAGGCATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTGACAGATCTTACCAACTATTAACTCTCCCAGATAGGCATCAG  650

seq1  CCCATGCGCCTCTCTTCTATATATCACTGAATTTTGATGGGCTGTCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCGCCTCTCTTCTATATATCACTGAATTTTGATGGGCTGTCTTGT  700

seq1  GCAAACTCTATGCACTGTAGCTGCTGTGAATTC  733
      |||||||||||||||||||||||||||||||||
seq2  GCAAACTCTATGCACTGTAGCTGCTGTGAATTC  733

seq1: chr6_65607331_65608242
seq2: B6Ng01-190E23.g_291_1202

seq1  GTGCACAGTGATGGAGGCTGGGCTAGGCTTGCTTATAGAGCTAGATGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGTGATGGAGGCTGGGCTAGGCTTGCTTATAGAGCTAGATGTGC  50

seq1  AATGCTTGTTGGTCTCACATCTTCACTGATCTTCACTTCACTGAGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGTTGGTCTCACATCTTCACTGATCTTCACTTCACTGAGAGAAG  100

seq1  CACAGCTGAGAACTTCTCCTGGCATTCTTGCTGGTCCCTCTTGCTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGAGAACTTCTCCTGGCATTCTTGCTGGTCCCTCTTGCTGACTT  150

seq1  GTACTGAGGCTGGGGCCTGGCTGTCTTTGCTAGGTTGTGCCACAGCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAGGCTGGGGCCTGGCTGTCTTTGCTAGGTTGTGCCACAGCTGCT  200

seq1  GATTCATGGTTGCTATCTCAATTCTACTTAACTGGACTGCTGGTGTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATGGTTGCTATCTCAATTCTACTTAACTGGACTGCTGGTGTAGCT  250

seq1  GTAAAGGGTTTGCAAGTGTTTGGATCTAGCTGCCCCTGCTCACCTATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGGTTTGCAAGTGTTTGGATCTAGCTGCCCCTGCTCACCTATGAA  300

seq1  CTAAACTAGCAATTTCCAGACAACACAGACAGGAGTTGTTCCAAAGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTAGCAATTTCCAGACAACACAGACAGGAGTTGTTCCAAAGAACC  350

seq1  TTTATAAATAGTTCCACTCCCTGCACCCCACCCCCACCCCCACCCCACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATAGTTCCACTCCCTGCACCCCACCCCCACCCCCACCCCACGA  400

seq1  CCATCCTTTCTTTTCCACTATCTCTGGTGGATGGTGGACTAAAAGGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTTCTTTTCCACTATCTCTGGTGGATGGTGGACTAAAAGGGTTG  450

seq1  TTAAAAGGTTTAAGAACCATCATTAAAAATAGGTGTTTGAAAAAATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGTTTAAGAACCATCATTAAAAATAGGTGTTTGAAAAAATTAAA  500

seq1  GTAACAGACCTTGTTTATTAGATCCTCTTTATCTTATATCATATTCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGACCTTGTTTATTAGATCCTCTTTATCTTATATCATATTCCTGA  550

seq1  GAATAATACAGATTAATCCCAAATATCAATATTATAAAATCTACCCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATACAGATTAATCCCAAATATCAATATTATAAAATCTACCCTTAT  600

seq1  GTGTTGTATGTGATTATAATATTACAGTGTATCTAATAATAAAACACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTATGTGATTATAATATTACAGTGTATCTAATAATAAAACACTTT  650

seq1  TAGAATTTTTTAGTCTCATCTATCTCCTTTTAACTGGGTATAGTCACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTTTAGTCTCATCTATCTCCTTTTAACTGGGTATAGTCACAAA  700

seq1  ATAAAAGTTGTCCACCAGAGTATAACATCAGGTTTTATTGTGCTTCTATA  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTGTTCACCAGAGTATAACATCAGGTTTTATTGTGCTTCTATA  750

seq1  TTATGAAATCACTACATGAGACTCATTTCATTACATGTCCATTATCTCAG  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTATGAAATCACTACATGAGACTCATTTCATTACATGT-CATTATCTCAG  799

seq1  ATATTTTGTGTTGAGAATATTTAGGATCTCCCATTTTTGCACTTTTTAAG  850
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  ATATTTTGTGTTGAG-ATATTTAGGATCTCCAATTTTTGCACTTTTTAAG  848

seq1  TTTGTGAATCATC-TTTTGCAA--TACAT-GCGTAGAGCTCCAGAAAAAA  896
       ||||| |||||| ||||||||   |||| |||||||||||  |||||||
seq2  -TTGTG-ATCATCTTTTTGCAAATAACATGGCGTAGAGCTC--GAAAAAA  894

seq1  ATC-ATTCC-TCTGAACT  912
      ||| ||||| ||||||||
seq2  ATCAATTCCTTCTGAACT  912