BAC Information

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BAC

Clone NameB6Ng01-190P07
Chromosome6 (Build37)
Map Location 50,172,160 - 50,342,005
singlet/doubletdoublet
Overlap geneDfna5h, LOC100041681, Osbpl3
Upstream geneTra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6
Downstream geneCycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877, EG625167
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190P07.bB6Ng01-190P07.g
ACCGA014579GA014580
length1,2051,076
definitionB6Ng01-190P07.b B6Ng01-190P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,172,160 - 50,173,368)(50,340,942 - 50,342,005)
sequence
gaattccagggaggaattgctttacatggtagagcataatttgagccagc
cctggtttctcctaagctcctccccttttctagcccagctccccccacac
acacactctcctgaacccagcaaaacaaaacaaaacaaaacaaaacaaaa
caaaaaccctaaagtaacaagctatgaggagcaaagcaaactgctattga
gtttgctcaatagttcagagctacagccctccgccagccatgtgggtggg
aagcctcaatggctgttacaaacagcagcctgccatgccgtgaagcctgg
aatgtatcaaggctgataacagatcctgggggctctagctctgctcattg
ctgaccattctcagaccacaggtcccaaacggggaaagaaaactgtcagg
cccctgaccactgcactccttggcctcccaccttgagtcctaggatctcg
attctctaaaacacaacacccaagactgggcccacccaaagatccaaggg
gatcctgaaggccccaggggatcaccccttgggagagagtccacttctcc
atctggccgtaaccacaggcaataccttgttttacaactcgtaggggccc
gtcctgcgaagagatcccttgacccccatccagcatgtccagaaaggcga
actctctgtaggccagggggtccaagtagacagagtctagtttcctctca
tgctcgaagccaccatgtttcccttggaggaggcagaattctgtagtgga
gagaaaagcccaagccaggcactgatcacctcagactcatcgttacctac
ctcacactgtgtcaggagacacacaaaagggcttttgcttctttgcatca
gtttttgagactgagtctagtggtttgaatgagaaatatctcccatagac
tcagcttttgagtgtttagtcgccagtttagtggcattttttggagggta
cagtcctgctagaggaagtaagtccactgcgggaggctctgagtacagcc
tttgagctactgtcaccctgtgtgatctcagcttctgctcccgcctcaca
tgcctgccactgctgacgtgcctctgcccctccatgacggactcttctct
cccagaaaacaataggcaattggactctctggagatggcctttggttcca
cagtaccttgcccagcaaccgaaattactaataggagccttactatgtag
cccag

gaattcactttcagaacagatctcattattctattaatggtatggattta
gatggagttggatatattctaaaagtttgacctttgagcccttaaccttc
aagtcaaagtgcaaatcaaaggataatcctggcaactaaagagcacctag
catggtgcccagacatgccaggcacaaaccatgccttggctgcctcttcc
ctccccttctcctaggtcagcctttcctgtacttgtacagtgactctgaa
ttcttgcataagggtcagtcttttttcatggagaagttgatttctccgag
gtcattgtttctgtcttggggaatctttttgttgttgttgtttttcgaga
cagggtgtctctgtatagccctggctgtcctggaactcactctgtagacc
aggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgctg
ggattaaaggcgtgcgccaccacgcccggctctgtcttggggaatcttga
acatgccctgtgatgtagtgtcaatttgtcaacacctgtctggaactgag
tatataagttacttctatcattcctgtcatgaaatgcttgacaaatgtca
cttaaagaaagttttattttggttttattttggctcatggtttgagggga
cagtccatcgagacagaggaggaatgatgggcaggagcacgaggcagctc
atgtcaggcatcacatctccagtcaggaagcagagagagatacgtgatag
cacccctcttccctttcctttttatttagtctgggataaagaatgggcgc
tcgctacccattgagggcaggtcttcccagctcagcctaaatctctctgg
aaacaacccagcttggcatgttccatgggttttgtctctgaaggtggctt
taaattcttgctaagctgacactcaggatttgattaaatattcacaccca
agcttggacttataccaagtgcctcatttcatggcatgtttggttactga
gatcccaggtgtgatcatactgtcttattctacttgcgaatagaatgctg
gcacttgtctaactaacgcctctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50172160_50173368
seq2: B6Ng01-190P07.b_47_1251

seq1  GAATTCCAGGGAGGAATTGCTTTACATGGTAGAGCATAATTTGAGCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGGAATTGCTTTACATGGTAGAGCATAATTTGAGCCAGC  50

seq1  CCTGGTTTCTCCTAAGCTCCTCCCCTTTTCTAGCCCAGCTCCCCCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTCTCCTAAGCTCCTCCCCTTTTCTAGCCCAGCTCCCCCCACAC  100

seq1  ACACACTCTCCTGAACCCAGCAAAACAAAACAAAACAAAACAAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCTCCTGAACCCAGCAAAACAAAACAAAACAAAACAAAACAAAA  150

seq1  CAAAAACCCTAAAGTAACAAGCTATGAGGAGCAAAGCAAACTGCTATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCCTAAAGTAACAAGCTATGAGGAGCAAAGCAAACTGCTATTGA  200

seq1  GTTTGCTCAATAGTTCAGAGCTACAGCCCTCCGCCAGCCATGTGGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTCAATAGTTCAGAGCTACAGCCCTCCGCCAGCCATGTGGGTGGG  250

seq1  AAGCCTCAATGGCTGTTACAAACAGCAGCCTGCCATGCCGTGAAGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCAATGGCTGTTACAAACAGCAGCCTGCCATGCCGTGAAGCCTGG  300

seq1  AATGTATCAAGGCTGATAACAGATCCTGGGGGCTCTAGCTCTGCTCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCAAGGCTGATAACAGATCCTGGGGGCTCTAGCTCTGCTCATTG  350

seq1  CTGACCATTCTCAGACCACAGGTCCCAAACGGGGAAAGAAAACTGTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATTCTCAGACCACAGGTCCCAAACGGGGAAAGAAAACTGTCAGG  400

seq1  CCCCTGACCACTGCACTCCTTGGCCTCCCACCTTGAGTCCTAGGATCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGACCACTGCACTCCTTGGCCTCCCACCTTGAGTCCTAGGATCTCG  450

seq1  ATTCTCTAAAACACAACACCCAAGACTGGGCCCACCCAAAGATCCAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAAAACACAACACCCAAGACTGGGCCCACCCAAAGATCCAAGGG  500

seq1  GATCCTGAAGGCCCCAGGGGATCACCCCTTGGGAGAGAGTCCACTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAAGGCCCCAGGGGATCACCCCTTGGGAGAGAGTCCACTTCTCC  550

seq1  ATCTGGCCGTAACCACAGGCAATACCTTGTTTTACAACTCGTAGGGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCGTAACCACAGGCAATACCTTGTTTTACAACTCGTAGGGGCCC  600

seq1  GTCCTGCGAAGAGATCCCTTGACCCCCATCCAGCATGTCCAGAAAGGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCGAAGAGATCCCTTGACCCCCATCCAGCATGTCCAGAAAGGCGA  650

seq1  ACTCTCTGTAGGCCAGGGGGTCCAAGTAGACAGAGTCTAGTTTCCTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGTAGGCCAGGGGGTCCAAGTAGACAGAGTCTAGTTTCCTCTCA  700

seq1  TGCTCGAAGCCACCATGTTTCCCTTGGAGGAGGCAGAATTCTGTAGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGAAGCCACCATGTTTCCCTTGGAGGAGGCAGAATTCTGTAGTGGA  750

seq1  GAGAAAAGCCCAAGCCAGGCACTGATCACCTCAGACTCATCGTTACCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGCCCAAGCCAGGCACTGATCACCTCAGACTCATCGTTACCTAC  800

seq1  CTCACACTGTGTCAGGAGACACACAAAAGGGCTTTTGCTTCTTTGCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTGTGTCAGGAGACACACAAAAGGGCTTTTGCTTCTTTGCATCA  850

seq1  GTTTTTGAGACTGAGTCTAGTGGTTTGAATGAGAAATATCTCCCATAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGACTGAGTCTAGTGGTTTGAATGAGAAATATCTCCCATAGAC  900

seq1  TCAGCTTTTGAGTGTTTAGTCGCCAGTTTAGTGGCATTTTTTGGAAGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAGCTTTTGAGTGTTTAGTCGCCAGTTTAGTGGCATTTTTTGGAGGGTA  950

seq1  CAGTCCTGCTAGAGGAAGTAAGT-CACTGCGGGAGGGCTCTGAGTTACAG  999
      ||||||||||||||||||||||| |||||||||| ||||||||| |||||
seq2  CAGTCCTGCTAGAGGAAGTAAGTCCACTGCGGGA-GGCTCTGAG-TACAG  998

seq1  CCTTTGAGCTACTGTCACCCTGTGTGATCTCAGCTTCCTGCTCCCG-CTC  1048
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CCTTTGAGCTACTGTCACCCTGTGTGATCTCAGCTT-CTGCTCCCGCCTC  1047

seq1  ACATGCCTGCCACTTGCTGACGTGCCTCTGCCCCTCCATGGCCGACTCTT  1098
      ||||||||||||| |||||||||||||||||||||||||| | |||||||
seq2  ACATGCCTGCCAC-TGCTGACGTGCCTCTGCCCCTCCATGACGGACTCTT  1096

seq1  CTCTCCCAGAAACCATAAGCCAAATTGAACTCTTCCTTGAG-TTGCCTTT  1147
      |||||||||||| ||  || | ||||| |||||  || ||| | ||||||
seq2  CTCTCCCAGAAAACAATAGGC-AATTGGACTCT--CTGGAGATGGCCTTT  1143

seq1  GGT--CACAGTACTTTGTCACAGCAACAGAAAAATAACTAATA-GAGTCT  1194
      |||  |||||||| ||| | ||||||| |  |||| ||||||| ||| ||
seq2  GGTTCCACAGTACCTTG-CCCAGCAACCG--AAATTACTAATAGGAGCCT  1190

seq1  TACTATGTAGCCCAG  1209
      |||||||||||||||
seq2  TACTATGTAGCCCAG  1205


seq1: chr6_50340942_50342005
seq2: B6Ng01-190P07.g_65_1140 (reverse)

seq1  GATAGAGGCGTTAGTTAGAACAGGTGCAAGCATTCTATTTCTGCAAGTAG  50
      |||||||||||||||||| ||| |||| |||||||||||   ||||||||
seq2  GATAGAGGCGTTAGTTAG-ACAAGTGCCAGCATTCTATT--CGCAAGTAG  47

seq1  -ATAAGACAGTATGATCAACACCTGGGAT-TCACTTACCAAACATGCACT  98
       |||||||||||||||| ||||||||||| ||| | |||||||||||  |
seq2  AATAAGACAGTATGATC-ACACCTGGGATCTCAGTAACCAAACATGCCAT  96

seq1  G-AATG-GGCACTTGCTATAGGT-CAAGCTT-GGTGTG-ATATTTAATC-  142
      | |||| |||||||| |||| || ||||||| |||||| |||||||||| 
seq2  GAAATGAGGCACTTGGTATAAGTCCAAGCTTGGGTGTGAATATTTAATCA  146

seq1  AATCCTGAGTGTCAGCTTAGC-AGGATTTAAAGCCACTTTCAGAGAC-AA  190
      ||||||||||||||||||||| || |||||||||||| ||||||||| ||
seq2  AATCCTGAGTGTCAGCTTAGCAAGAATTTAAAGCCACCTTCAGAGACAAA  196

seq1  ACCCATGG-ACATGCCAAGCTGGG-TGTTTCCAGAGAGATTTA-GCTGAG  237
      |||||||| ||||||||||||||| |||||||||||||||||| ||||||
seq2  ACCCATGGAACATGCCAAGCTGGGTTGTTTCCAGAGAGATTTAGGCTGAG  246

seq1  CTGGGAAGACCTGCCCTC-ATGGGTAGCGAGCG-CCATTCTTTATCCCAG  285
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  CTGGGAAGACCTGCCCTCAATGGGTAGCGAGCGCCCATTCTTTATCCCAG  296

seq1  ACTAAATAAAAAGGAAAGGGAAGAGGGGTGCTATCACGTATCTCTCTCTG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATAAAAAGGAAAGGGAAGAGGGGTGCTATCACGTATCTCTCTCTG  346

seq1  CTTCCTGACTGGAGATGTGATGCCTGACATGAGCTGCCTCGTGCTCCTG-  384
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTCCTGACTGGAGATGTGATGCCTGACATGAGCTGCCTCGTGCTCCTGC  396

seq1  CCATCATTCCTCCTCTGTCTCGATGGACTGTCCCCTCAAACCATGAGCCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTCCTCCTCTGTCTCGATGGACTGTCCCCTCAAACCATGAGCCA  446

seq1  AAATAAAACCAAAATAAAACTTTCTTTAAGTGACATTTGTCAAGCATTTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACCAAAATAAAACTTTCTTTAAGTGACATTTGTCAAGCATTTC  496

seq1  ATGACAGGAATGATAGAAGTAACTTATATACTCAGTTCCAGACAGGTGTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGAATGATAGAAGTAACTTATATACTCAGTTCCAGACAGGTGTT  546

seq1  GACAAATTGACACTACATCACAGGGCATGTTCAAGATTCCCCAAGACAGA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTGACACTACATCACAGGGCATGTTCAAGATTCCCCAAGACAGA  596

seq1  GCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGG  646

seq1  CAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  696

seq1  GGACAGCCAGGGCTATACAGAGACACCCTGTCTCGAAAAACAACAACAAC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGGGCTATACAGAGACACCCTGTCTCGAAAAACAACAACAAC  746

seq1  AAAAAGATTCCCCAAGACAGAAACAATGACCTCGGAGAAATCAACTTCTC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATTCCCCAAGACAGAAACAATGACCTCGGAGAAATCAACTTCTC  796

seq1  CATGAAAAAAGACTGACCCTTATGCAAGAATTCAGAGTCACTGTACAAGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAAGACTGACCCTTATGCAAGAATTCAGAGTCACTGTACAAGT  846

seq1  ACAGGAAAGGCTGACCTAGGAGAAGGGGAGGGAAGAGGCAGCCAAGGCAT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGGCTGACCTAGGAGAAGGGGAGGGAAGAGGCAGCCAAGGCAT  896

seq1  GGTTTGTGCCTGGCATGTCTGGGCACCATGCTAGGTGCTCTTTAGTTGCC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGCCTGGCATGTCTGGGCACCATGCTAGGTGCTCTTTAGTTGCC  946

seq1  AGGATTATCCTTTGATTTGCACTTTGACTTGAAGGTTAAGGGCTCAAAGG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATCCTTTGATTTGCACTTTGACTTGAAGGTTAAGGGCTCAAAGG  996

seq1  TCAAACTTTTAGAATATATCCAACTCCATCTAAATCCATACCATTAATAG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTTTAGAATATATCCAACTCCATCTAAATCCATACCATTAATAG  1046

seq1  AATAATGAGATCTGTTCTGAAAGTGAATTC  1064
      ||||||||||||||||||||||||||||||
seq2  AATAATGAGATCTGTTCTGAAAGTGAATTC  1076


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