BAC Information

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BAC

Clone NameB6Ng01-191M24
Chromosome6 (Build37)
Map Location 91,377,335 - 91,588,247
singlet/doubletdoublet
Overlap geneLOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3
Upstream geneCcdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a
Downstream geneSlc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191M24.bB6Ng01-191M24.g
ACCGA015213GA015214
length1,0261,102
definitionB6Ng01-191M24.b B6Ng01-191M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,377,335 - 91,378,359)(91,587,183 - 91,588,247)
sequence
gaattcagcatagtgacacactattggcttattcaaacatcagcagaaaa
attacatatacgtgcagggtgtcagagttctgtgagttgttgactcagtt
cagatagccctgttatgtcctcacactcctctttatctttaccattaagc
tgttcccaggaatgttttaactatggggcatacccaggtttgtttttctt
tttttctcagccccaggcagcctctaggctcacaaacaaccagcaatttc
tgagtactttatatgacttacaggtcttgaaatttcatctttctttcagt
ttctccccatgtgagtctctaagcttttcctgctccatgtcatccacaca
gaccccgttctgcgtgactctcatgtcagtcagcatggcagcttcatgct
catccatgtgttactgtgtgcagaatccccttctcttttaaagctgaata
aaagtccaatgtagggggcctgcgctttgtttatccgtccttaggactgc
tttatacatagaaactatttttgtcggcgtctgtctgtctgtctgcctgt
ctgtgttttctgattatattgtgattataataataaatgtttacaaactt
tgtttggcaaaacagagatagctgaagaaattgaacgattgaagcctatc
acaagctgtcagatatttgtggttattatgggtaatacaggccatgagat
acatttaccatgtcttctttgaagacacacaggagagtataaaatactta
tgtaattggtatgtgacttttcatttatgtctgccacccacatcacaata
aataggcttaacaccaacaaaaaagataactcaggttttttccatttaaa
ctgaaaccattgtgagctacacatgatgcatggctctgataccagcatca
caagctcatgttaagggaacttatcctaccctgaacaatcacgtgttagt
gtcctctgatttccaaaatattagtattatgtttaattcaggtactgagc
accaaaaaaaatgactttgatggcat
gaattcagtaagaaaacaccaacgggtctccctccacccccacctcccac
acacactcagacttagccctgccggaggggctttgcaaggggccatttgg
gctagaaggagctgagaaccccagcagcccaggctccgtttttttgttgt
tctttgtctttggaagtacctggatagaaccctggagcatgatgggcaaa
tagaccccacactgagctgcaccccagtcccaaacccagccaagcgatat
gggggcagattagcctggaggtactcccttcgggcatgcctgtggtttgg
gggctttgaaggcagactctagctgtatttttggctctgagaggaaaccc
actcagcaaccttaggggtgtaggaaaagtcctaactgggggatactcag
gccagcacacttttgttattcttctcagaagcctattttttttttctaac
aaggtccaggaagctcatacagcaaatgattatcttaaccattttgaaaa
tcagattcggtgaaatatgaatccgattccagcagtaggaaggtggaggc
aggaggattacaagttgaagctcattcttagatacatagtaaattagagg
ccaacctgggagacatgagaccctgactcaaaaaaaaaagaaaaagaaaa
gaaaggaaagatagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagagaaacaagcaagtaaatagcccagatgagagcctggg
gctaacccagagctggcgtggtctgagactattgaatgaaccatatgagg
aaacatgccaactaggtggtcagagtctttgtgctgtaccccccagatcc
cctgtagggcttcatggagacaggagagctgtcctccagcctcagagcta
agtctagaccaaggcagggaaagtctctagggtgggctttcagccattga
atatggataagagtgccgaaccttacacgttcacacgggccctccactaa
ttttcacagggcaaaggttcagtctggccaaggggggagtttaagcgctc
ctcattctctaatcccaaggccagaagccaagggtattaacacttgaatg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_91377335_91378359
seq2: B6Ng01-191M24.b_37_1062

seq1  GAATTCAGCATAGTGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGTGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50

seq1  ATTACATATACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATATACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100

seq1  CAGATAGCCCTGTTATGTCCTCACACTCCTCTTTATCTTTACCATTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCCCTGTTATGTCCTCACACTCCTCTTTATCTTTACCATTAAGC  150

seq1  TGTTCCCAGGAATGTTTTAACTATGGGGCATACCCAGGTTTGTTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGAATGTTTTAACTATGGGGCATACCCAGGTTTGTTTTTCTT  200

seq1  TTTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTC  250

seq1  TGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAGT  300

seq1  TTCTCCCCATGTGAGTCTCTAAGCTTTTCCTGCTCCATGTCATCCACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCATGTGAGTCTCTAAGCTTTTCCTGCTCCATGTCATCCACACA  350

seq1  GACCCCGTTCTGCGTGACTCTCATGTCAGTCAGCATGGCAGCTTCATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCGTTCTGCGTGACTCTCATGTCAGTCAGCATGGCAGCTTCATGCT  400

seq1  CATCCATGTGTTACTGTGTGCAGAATCCCCTTCTCTTTTAAAGCTGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGTGTTACTGTGTGCAGAATCCCCTTCTCTTTTAAAGCTGAATA  450

seq1  AAAGTCCAATGTAGGGGGCCTGCGCTTTGTTTATCCGTCCTTAGGACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAATGTAGGGGGCCTGCGCTTTGTTTATCCGTCCTTAGGACTGC  500

seq1  TTTATACATAGAAACTATTTTTGTCGGCGTCTGTCTGTCTGTCTGCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATAGAAACTATTTTTGTCGGCGTCTGTCTGTCTGTCTGCCTGT  550

seq1  CTGTGTTTTCTGATTATATTGTGATTATAATAATAAATGTTTACAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTCTGATTATATTGTGATTATAATAATAAATGTTTACAAACTT  600

seq1  TGTTTGGCAAAACAGAGATAGCTGAAGAAATTGAACGATTGAAGCCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCAAAACAGAGATAGCTGAAGAAATTGAACGATTGAAGCCTATC  650

seq1  ACAAGCTGTCAGATATTTGTGGTTATTATGGGTAATACAGGCCATGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGTCAGATATTTGTGGTTATTATGGGTAATACAGGCCATGAGAT  700

seq1  ACATTTACCATGTCTTCTTTGAAGACACACAGGAGAGTATAAAATACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACCATGTCTTCTTTGAAGACACACAGGAGAGTATAAAATACTTA  750

seq1  TGTAATTGGTATGTGGCTTTTCATTTATGTCTGCCACCCACATCACAATA  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTAATTGGTATGTGACTTTTCATTTATGTCTGCCACCCACATCACAATA  800

seq1  AATAGGCTTAACACCAACAAAAAAGAATAACTCAGGTTTTTTCCATTTAA  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATAGGCTTAACACCAACAAAAAAG-ATAACTCAGGTTTTTTCCATTTAA  849

seq1  ACTGAAACCAATGTGAGCTACACCATGATGCATGGCTCTGATACCAGCA-  899
      |||||||||| ||||||||||| |||||||||||||||||||||||||| 
seq2  ACTGAAACCATTGTGAGCTACA-CATGATGCATGGCTCTGATACCAGCAT  898

seq1  CACCAGCTCATGTTAAGGGAACTTATCCAACCTTGAACAATCACGTGTTT  949
      ||| |||||||||||||||||||||||| ||| |||||||||||||| ||
seq2  CACAAGCTCATGTTAAGGGAACTTATCCTACCCTGAACAATCACGTG-TT  947

seq1  AGTGTCCTCTGATTT-CAAAATATTAGTTATATGTTTATTTCA-GTACTG  997
      ||||||||||||||| ||||||||||||  |||||||| |||| ||||||
seq2  AGTGTCCTCTGATTTCCAAAATATTAGTATTATGTTTAATTCAGGTACTG  997

seq1  AGGACC-AAAAAAATGACTTTGATGGCAT  1025
      || ||| ||||||||||||||||||||||
seq2  AGCACCAAAAAAAATGACTTTGATGGCAT  1026

seq1: chr6_91587183_91588247
seq2: B6Ng01-191M24.g_68_1169 (reverse)

seq1  CCCA-TCAAGT-TTAAT-CCCTTG--CTCTGG-CTTGGGTT---AGAATG  41
      |||| |||||| ||||| ||||||   ||||| |||||| |   ||||||
seq2  CCCATTCAAGTGTTAATACCCTTGGCTTCTGGCCTTGGGATTAGAGAATG  50

seq1  AG--GCGCTTAAA--CACCACTTGG-CAG-CTGAGCCTT--GCCTGTG-A  82
      ||  |||||||||  | || ||||| ||| |||| ||||   |||||| |
seq2  AGGAGCGCTTAAACTCCCCCCTTGGCCAGACTGAACCTTTGCCCTGTGAA  100

seq1  AATTAGTG--GGGCCCGTG-GACGTTGTA--GGTCGGCACTC-TATCCAT  126
      ||||||||  ||||||||| ||   ||||  | ||||||||| |||||||
seq2  AATTAGTGGAGGGCCCGTGTGAACGTGTAAGGTTCGGCACTCTTATCCAT  150

seq1  A-TCAATGGCTGAA--GCCACC---TAGACTTCCCTTGCC-TGGTCTAGA  169
      | ||||||||||||   |||||    |||||| || |||| |||||||||
seq2  ATTCAATGGCTGAAAGCCCACCCTAGAGACTTTCCCTGCCTTGGTCTAGA  200

seq1  CTTAGCTCTG-GGCTGGA-GACAGCTCTCCTGTCTCCATGAAGCCCTACA  217
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  CTTAGCTCTGAGGCTGGAGGACAGCTCTCCTGTCTCCATGAAGCCCTACA  250

seq1  -GGGATCTGGGGGGTACAGCAC-AAGACTCTGACCACCTAGTTGGCATGT  265
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGGATCTGGGGGGTACAGCACAAAGACTCTGACCACCTAGTTGGCATGT  300

seq1  TTCCTCATATGGTTCATTCAATAGTCTCAGACCACGCCAGCTCTGGGTTA  315
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATATGGTTCATTCAATAGTCTCAGACCACGCCAGCTCTGGGTTA  350

seq1  G-CCCAGGCTCTCATCTGGGCTATTTACTTGCTTGTTTCTCTTTCTTTCT  364
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGCTCTCATCTGGGCTATTTACTTGCTTGTTTCTCTTTCTTTCT  400

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTT  414
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTATCTTTCCTT  450

seq1  TCTTTTC-TTTTCTTTTTTTTTTGAGTCAGGGTCTCATGTCTCCCAGGTT  463
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTTCTTTTTTTTTTGAGTCAGGGTCTCATGTCTCCCAGGTT  500

seq1  GGCCTCTAATTTACTATGTATCTAAGAATGAGCTTCAACTTGTAATCCTC  513
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTAATTTACTATGTATCTAAGAATGAGCTTCAACTTGTAATCCTC  550

seq1  CTGCCTCCACCTTCCTACTGCTGGAATCGGATTCATATTTCACCGAATCT  563
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCACCTTCCTACTGCTGGAATCGGATTCATATTTCACCGAATCT  600

seq1  GATTTTCAAAATGGTTAAGATAATCATTTGCTGTATGAGCTTCCTGGACC  613
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCAAAATGGTTAAGATAATCATTTGCTGTATGAGCTTCCTGGACC  650

seq1  TTGTTAGAAAAAAAAAATAGGCTTCTGAGAAGAATAACAAAAGTGTGCTG  663
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAAAAAAAAAATAGGCTTCTGAGAAGAATAACAAAAGTGTGCTG  700

seq1  GCCTGAGTATCCCCCAGTTAGGACTTTTCCTACACCCCTAAGGTTGCTGA  713
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTATCCCCCAGTTAGGACTTTTCCTACACCCCTAAGGTTGCTGA  750

seq1  GTGGGTTTCCTCTCAGAGCCAAAAATACAGCTAGAGTCTGCCTTCAAAGC  763
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTCCTCTCAGAGCCAAAAATACAGCTAGAGTCTGCCTTCAAAGC  800

seq1  CCCCAAACCACAGGCATGCCCGAAGGGAGTACCTCCAGGCTAATCTGCCC  813
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACCACAGGCATGCCCGAAGGGAGTACCTCCAGGCTAATCTGCCC  850

seq1  CCATATCGCTTGGCTGGGTTTGGGACTGGGGTGCAGCTCAGTGTGGGGTC  863
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCGCTTGGCTGGGTTTGGGACTGGGGTGCAGCTCAGTGTGGGGTC  900

seq1  TATTTGCCCATCATGCTCCAGGGTTCTATCCAGGTACTTCCAAAGACAAA  913
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCCATCATGCTCCAGGGTTCTATCCAGGTACTTCCAAAGACAAA  950

seq1  GAACAACAAAAAAACGGAGCCTGGGCTGCTGGGGTTCTCAGCTCCTTCTA  963
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAAAAAAACGGAGCCTGGGCTGCTGGGGTTCTCAGCTCCTTCTA  1000

seq1  GCCCAAATGGCCCCTTGCAAAGCCCCTCCGGCAGGGCTAAGTCTGAGTGT  1013
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAATGGCCCCTTGCAAAGCCCCTCCGGCAGGGCTAAGTCTGAGTGT  1050

seq1  GTGTGGGAGGTGGGGGTGGAGGGAGACCCGTTGGTGTTTTCTTACTGAAT  1063
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGAGGTGGGGGTGGAGGGAGACCCGTTGGTGTTTTCTTACTGAAT  1100

seq1  TC  1065
      ||
seq2  TC  1102