BAC Information

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BAC

Clone NameB6Ng01-191O02
Chromosome6 (Build37)6 (Build37)
Map Location 70,783,671 - 70,784,29070,401,410 - 70,402,138
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIgk, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia
Downstream geneEif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191O02.bB6Ng01-191O02.g
ACCGA015265GA015266
length1,014733
definitionB6Ng01-191O02.b B6Ng01-191O02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,783,671 - 70,784,290)(70,401,410 - 70,402,138)
sequence
gaattccctaactggatcagggaaacaaacaaacaaacaaacaaacaaac
aaaaccaaacatctcttagaaaaagaaacatcacatagaatgttcacaat
ttacgtaaactgttgacagaatgtgaactaatatcaagtcatattggtac
acagaatcagaaacagaacatcaaaagaaaaaaaaaacagacagaaatag
aataaactcagcttccttatacacagctgaacatggaaaactgtgcagat
actttggaaaagactttggtcatttctccaaaatgttaaatataaagtta
ccacatgatgcggtacatacccaaaatatataaatatttacctgcaaaaa
tggtcacaggaatattattttgattttccgtggtttctcttgctgttgat
ttatagtttcataataaacagaagacattaaattatttaaatgttcttat
attcattacatcttgttttgtgtctcaaaatatggtctattttagagaaa
cctattggctactgaggatgtatgttctgttgaacggatttaatctataa
tgtaatctaaccttaatactcctttgttgattttgtctgaatgactcctc
tattgatgcaactgggctattgatattgtttatgattattgggttgaggt
caatatatgcatttatttccagagtatttattttatgaaactaggagcat
ggatgtttggctcttacgtttcctattgcaatctattcttgatggattgg
ctccttgctcaatgtacagtacatttccttgtcttgtctgacttatgtgg
cctgatgcctctcttgtcagacacgggtatggctacatctgcttacccct
cggtttcatttgcttaggctacttccattctgtctaagactatgctcatc
tctgatatttgatgtggattttgcaggtaataaaaacatggctctgtttt
aaatccagtcgctatgattttttattggagaattgagaccattcatgttc
agagttgttactgg
gaattccactgtgtgtgtatgtgtgtgtgtgtatttggctacagattttt
ctttctgtttttgatgtggttttattttgctttcctgttatactgtgggt
ttttttgttttgtttttttttgtgtttttttgtttgtttgtttttgtttt
tgaaggaacttaaagaagacagggggacaggatctggaagcactcggggg
aggaggagaagagtatgatcttaatatatttaaattttaaaaatgtttta
aataataaaaaagatccctccccagagcaattatctgaatggagctaacc
taacaggagtccataaactctggactcagagagcaaaatctgagagactc
atgacataaatgatagttgatgtgtagtagcatctttgaggtcaacaaag
agagccacattttgtcaaggcccattcaagaggaatgacagacagtttta
aaacccactggctagcacaactgtggtgggtgtgcctcagaaaggcagag
ctctgaggactacatcaaggaatacatgtcctaagaacttcatgctccaa
gtaaaaagttggaaaataattttccacgcaaatggtcccctaagcaatct
agagtagccattgtaaatatagaataaaaatgagctttccaccaaaatta
tcaaaaaacataaggaaggactctttataatggtcaagggaaaagtttac
cacgatgaactgtctatttcttttttttttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_70783671_70784290
seq2: B6Ng01-191O02.b_33_652 (reverse)

seq1  ATAGCCCAGTTGCATCAATAGAGGAGTCATTCAGACAAAATCAACAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAGTTGCATCAATAGAGGAGTCATTCAGACAAAATCAACAAAGG  50

seq1  AGTATTAAGGTTAGATTACATTATAGATTAAATCCGTTCAACAGAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAAGGTTAGATTACATTATAGATTAAATCCGTTCAACAGAACATA  100

seq1  CATCCTCAGTAGCCAATAGGTTTCTCTAAAATAGACCATATTTTGAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAGTAGCCAATAGGTTTCTCTAAAATAGACCATATTTTGAGACA  150

seq1  CAAAACAAGATGTAATGAATATAAGAACATTTAAATAATTTAATGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAGATGTAATGAATATAAGAACATTTAAATAATTTAATGTCTTC  200

seq1  TGTTTATTATGAAACTATAAATCAACAGCAAGAGAAACCACGGAAAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTATGAAACTATAAATCAACAGCAAGAGAAACCACGGAAAATCA  250

seq1  AAATAATATTCCTGTGACCATTTTTGCAGGTAAATATTTATATATTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATTCCTGTGACCATTTTTGCAGGTAAATATTTATATATTTTGG  300

seq1  GTATGTACCGCATCATGTGGTAACTTTATATTTAACATTTTGGAGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACCGCATCATGTGGTAACTTTATATTTAACATTTTGGAGAAATG  350

seq1  ACCAAAGTCTTTTCCAAAGTATCTGCACAGTTTTCCATGTTCAGCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTCTTTTCCAAAGTATCTGCACAGTTTTCCATGTTCAGCTGTGT  400

seq1  ATAAGGAAGCTGAGTTTATTCTATTTCTGTCTGTTTTTTTTTTCTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAGCTGAGTTTATTCTATTTCTGTCTGTTTTTTTTTTCTTTTGA  450

seq1  TGTTCTGTTTCTGATTCTGTGTACCAATATGACTTGATATTAGTTCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTTTCTGATTCTGTGTACCAATATGACTTGATATTAGTTCACAT  500

seq1  TCTGTCAACAGTTTACGTAAATTGTGAACATTCTATGTGATGTTTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAACAGTTTACGTAAATTGTGAACATTCTATGTGATGTTTCTTTT  550

seq1  TCTAAGAGATGTTTGGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGATGTTTGGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCC  600

seq1  CTGATCCAGTTAGGGAATTC  620
      ||||||||||||||||||||
seq2  CTGATCCAGTTAGGGAATTC  620

seq1: chr6_70401410_70402138
seq2: B6Ng01-191O02.g_68_800 (reverse)

seq1  AAGAAAAAAAAA--GAATTGACAGTTCATCTTGGTAAACTTTTCCTTTGA  48
      ||||||||||||   ||| ||||||||||| |||||||||||||| ||||
seq2  AAGAAAAAAAAAAGAAATAGACAGTTCATCGTGGTAAACTTTTCCCTTGA  50

seq1  CCATTATAAAGTGTCCTTCCTTATGTTTTTTGATAATTTTGGTGGAAAGC  98
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCATTATAAAGAGTCCTTCCTTATGTTTTTTGATAATTTTGGTGGAAAGC  100

seq1  TCA-TTTTATTCTATA-TTACAATGGCTACTCTAGATTGCTTAGGGGACC  146
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCATTTTTATTCTATATTTACAATGGCTACTCTAGATTGCTTAGGGGACC  150

seq1  ATTTGCGTGGAAAATTATTTTCCAACTTTTTACTTGGAGCATGAAGTTCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCGTGGAAAATTATTTTCCAACTTTTTACTTGGAGCATGAAGTTCT  200

seq1  TAGGACATGTATTCCTTGATGTAGTCCTCAGAGCTCTGCCTTTCTGAGGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACATGTATTCCTTGATGTAGTCCTCAGAGCTCTGCCTTTCTGAGGC  250

seq1  ACACCCACCACAGTTGTGCTAGCCAGTGGGTTTTAAAACTGTCTGTCATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACCACAGTTGTGCTAGCCAGTGGGTTTTAAAACTGTCTGTCATT  300

seq1  CCTCTTGAATGGGCCTTGACAAAATGTGGCTCTCTTTGTTGACCTCAAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAATGGGCCTTGACAAAATGTGGCTCTCTTTGTTGACCTCAAAG  350

seq1  ATGCTACTACACATCAACTATCATTTATGTCATGAGTCTCTCAGATTTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTACACATCAACTATCATTTATGTCATGAGTCTCTCAGATTTTG  400

seq1  CTCTCTGAGTCCAGAGTTTATGGACTCCTGTTAGGTTAGCTCCATTCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGTCCAGAGTTTATGGACTCCTGTTAGGTTAGCTCCATTCAGA  450

seq1  TAATTGCTCTGGGGAGGGATCTTTTTTATTATTTAAAACATTTTTAAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTCTGGGGAGGGATCTTTTTTATTATTTAAAACATTTTTAAAAT  500

seq1  TTAAATATATTAAGATCATACTCTTCTCCTCCTCCCCCGAGTGCTTCCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATATTAAGATCATACTCTTCTCCTCCTCCCCCGAGTGCTTCCAG  550

seq1  ATCCTGTCCCCCTGTCTTCTTTAAGTTCCTTCAAAAACAAAAACAAACAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCCCCCTGTCTTCTTTAAGTTCCTTCAAAAACAAAAACAAACAA  600

seq1  ACAAAAAAACACAAAAAAAAACAAAACAAAAAAACCCACAGTATAACAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACACAAAAAAAAACAAAACAAAAAAACCCACAGTATAACAGG  650

seq1  AAAGCAAAATAAAACCACATCAAAAACAGAAAGAAAAATCTGTAGCCAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAATAAAACCACATCAAAAACAGAAAGAAAAATCTGTAGCCAAA  700

seq1  TACACACACACACATACACACACAGTGGAATTC  729
      |||||||||||||||||||||||||||||||||
seq2  TACACACACACACATACACACACAGTGGAATTC  733