BAC Information

Click to search

BAC

Clone NameB6Ng01-192A09
Chromosome6 (Build37)
Map Location 117,365,567 - 117,505,384
singlet/doubletdoublet
Overlap geneLOC100043777, LOC621462
Upstream geneAlox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192A09.bB6Ng01-192A09.g
ACCGA015372GA015373
length1,213796
definitionB6Ng01-192A09.b B6Ng01-192A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,504,163 - 117,505,384)(117,365,567 - 117,366,362)
sequence
gaattccagtcctgactttctttggtgttgaacagcagtatggaattgta
agctgaataaaccctttcctccccaacttgcttcttggtcatgatgtttg
tgcaggaatagaaaccctgactaatacacaaaccaaaccaagcaagcaag
caagcaaacaaacaaaaaaccccaaattcaatgaggagcaaagcagatga
catttgactccaactttgcctttgaaacagaaagctgacattaaccaatc
agtctctgcagaatcaagatgaagcaaagaactgtaggtcatatgaggcc
accaggctaaaggagagatgtttaggccagttaaagggaaggtactcagg
ccaggttaaaggggaggtgtccaggcaaatctgggggtatgttactctac
aaaagctgctgttgaaaatgaaaatgagtcttactccagcacctgcacgg
gtgtcttttggctacattgcagcaggcagtagacgtttgtatacgtactc
tcaaaactatataccctacatgagtgcctggaaaaactagccttacttga
gttagataagccaattgagtgaggcatcaaaacaccaaactcaagagtgg
cggattcatggtctaatgaaaaacaaacaactccttcccccaaaacgaaa
caaaaagtcatgaaacaaaattaattctcaatattatattaaaacataat
aaaatgcctaaatttttgaaactgatctcatgctttaaaatcattaaatt
aataataataactgtacttcaaataccaccaccagcaaaaactgaggatt
aagtggccagagaacaaggcagcacagaatattctttataatttagagaa
aacggtcaattgacatcactttattttgataataagaattagatgaaatg
gatttgaatgcatatccattaagcatcattaataaaagaataaaaaagta
gatatattttcaaatcacaaaggaaaagtcagaatgaaaaaaaacctggc
atatgaaaggtcttattagaaaggaaaataaaaatagcagaaataaacca
gtatatgatcctgttacgaaaatgattatgatggatttcatctgaatcag
aagaattttatattagtaaaaaatctataatggcattagtgttgctagtc
catccgaatatctctaagaataaggcaataggaagaatgcatggggtgaa
ttccaatactagg
gaattctgggagagaacagcagcccatctcattaaagggcaattactctg
cctatctctgtagaggaactcaaggtgaacctgccttcctaagaaggctt
gccttcttgaggggatatcctttagctagcctctgaccctgcccaactgg
aatgtctccaaccagactgtaaactgcacctccttagccagaaggaatga
gttttccttgaatggaccttgactgctcgctactgtgtccataacaaccc
aattagttcaatggaacctctgtacctcagaataactctgggagataaaa
cccttctctaagcagcaggcattgaaacaattcaaaaataacctgtcagc
tcaaagaagctgacaaaactaagagtaccgacaggggagaatcttacctc
gggtcagactttctcaagagtccaaaacaaagtccaaatagtcacgacac
tgcttcaccaagtagaggtttaaaagtaactgtcttcagctgaagtggga
ggatgtgaggccccaatctgaagagatgcctcagctgcatgggggtcctc
cagccctttcctcccaggtgtggtcaacttgtactgctggtacccagaac
atgtcttctttagaaatgggccatggtcgtgtgcgtttttaatcccagca
cttgagaggcagagataggtggatctctgagttcgaggccagcctggtct
actgagtgagtaacaaacaggacaggaagagctacacagagaaattctat
cttgattaaaaccaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_117504163_117505384
seq2: B6Ng01-192A09.b_44_1256 (reverse)

seq1  CCTAGTATTTGAATTCACCCACTGTATCTTTTCCTATTGCCTTA-TCTTA  49
      ||||||||| ||||||||||  || || | |||||||||||||| |||||
seq2  CCTAGTATTGGAATTCACCCCATGCAT-TCTTCCTATTGCCTTATTCTTA  49

seq1  G-TATTTTTGGATTGACTAGGCACACTAATGCAATTATTAGATTTTTTTA  98
      |  || || |||| ||||||  |||||||||| |||| ||||||||||  
seq2  GAGATATTCGGATGGACTAGCAACACTAATGCCATTA-TAGATTTTTT--  96

seq1  ACCTAATAT-AAATTC-TCTGATTCAAGATGAAAATTCATCATAATCATT  146
        ||||||| |||||| |||||||| ||||| |||| |||||||||||||
seq2  -ACTAATATAAAATTCTTCTGATTC-AGATG-AAATCCATCATAATCATT  143

seq1  TTCGTAACAGGATTCATATACTTGGTTTTATTTCTGCTA-TTTTATTTTC  195
      |||||||||||| |||||||||  | ||||||||||||| ||||||||||
seq2  TTCGTAACAGGA-TCATATACT--GGTTTATTTCTGCTATTTTTATTTTC  190

seq1  CTTTCTAAT-AGACCTTTTCATATGCCAGGTTTTTTTTTCATTCTGACTT  244
      ||||||||| ||||| |||||||||||||| |||||||||||||||||||
seq2  CTTTCTAATAAGACC-TTTCATATGCCAGG-TTTTTTTTCATTCTGACTT  238

seq1  TTCCTTTGTGATTTTGAAAATTATATCTACTTTTTTTATTCTTTTATTAA  294
      ||||||||||| |||||||| ||||||||| |||||||||||||||||||
seq2  TTCCTTTGTGA-TTTGAAAA-TATATCTAC-TTTTTTATTCTTTTATTAA  285

seq1  TGATGCTTAATGGATATGCATTCAAATCCATTTCATCTAATTCTTATTAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTAATGGATATGCATTCAAATCCATTTCATCTAATTCTTATTAT  335

seq1  CAAAATAAAGTGATGTCAATTGACCGTTTTCTCTAAATTATAAAGAATAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAGTGATGTCAATTGACCGTTTTCTCTAAATTATAAAGAATAT  385

seq1  TCTGTGCTGCCTTGTTCTCTGGCCACTTAATCCTCAGTTTTTGCTGGTGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGCCTTGTTCTCTGGCCACTTAATCCTCAGTTTTTGCTGGTGG  435

seq1  TGGTATTTGAAGTACAGTTATTATTATTAATTTAATGATTTTAAAGCATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTGAAGTACAGTTATTATTATTAATTTAATGATTTTAAAGCATG  485

seq1  AGATCAGTTTCAAAAATTTAGGCATTTTATTATGTTTTAATATAATATTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGTTTCAAAAATTTAGGCATTTTATTATGTTTTAATATAATATTG  535

seq1  AGAATTAATTTTGTTTCATGACTTTTTGTTTCGTTTTGGGGGAAGGAGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATTTTGTTTCATGACTTTTTGTTTCGTTTTGGGGGAAGGAGTT  585

seq1  GTTTGTTTTTCATTAGACCATGAATCCGCCACTCTTGAGTTTGGTGTTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTCATTAGACCATGAATCCGCCACTCTTGAGTTTGGTGTTTT  635

seq1  GATGCCTCACTCAATTGGCTTATCTAACTCAAGTAAGGCTAGTTTTTCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTCACTCAATTGGCTTATCTAACTCAAGTAAGGCTAGTTTTTCCA  685

seq1  GGCACTCATGTAGGGTATATAGTTTTGAGAGTACGTATACAAACGTCTAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCATGTAGGGTATATAGTTTTGAGAGTACGTATACAAACGTCTAC  735

seq1  TGCCTGCTGCAATGTAGCCAAAAGACACCCGTGCAGGTGCTGGAGTAAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTGCAATGTAGCCAAAAGACACCCGTGCAGGTGCTGGAGTAAGA  785

seq1  CTCATTTTCATTTTCAACAGCAGCTTTTGTAGAGTAACATACCCCCAGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTCATTTTCAACAGCAGCTTTTGTAGAGTAACATACCCCCAGAT  835

seq1  TTGCCTGGACACCTCCCCTTTAACCTGGCCTGAGTACCTTCCCTTTAACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGACACCTCCCCTTTAACCTGGCCTGAGTACCTTCCCTTTAACT  885

seq1  GGCCTAAACATCTCTCCTTTAGCCTGGTGGCCTCATATGACCTACAGTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAACATCTCTCCTTTAGCCTGGTGGCCTCATATGACCTACAGTTC  935

seq1  TTTGCTTCATCTTGATTCTGCAGAGACTGATTGGTTAATGTCAGCTTTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCATCTTGATTCTGCAGAGACTGATTGGTTAATGTCAGCTTTCT  985

seq1  GTTTCAAAGGCAAAGTTGGAGTCAAATGTCATCTGCTTTGCTCCTCATTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAGGCAAAGTTGGAGTCAAATGTCATCTGCTTTGCTCCTCATTG  1035

seq1  AATTTGGGGTTTTTTGTTTGTTTGCTTGCTTGCTTGCTTGGTTTGGTTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGGGTTTTTTGTTTGTTTGCTTGCTTGCTTGCTTGGTTTGGTTTG  1085

seq1  TGTATTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCA  1135

seq1  AGTTGGGGAGGAAAGGGTTTATTCAGCTTACAATTCCATACTGCTGTTCA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGAGGAAAGGGTTTATTCAGCTTACAATTCCATACTGCTGTTCA  1185

seq1  ACACCAAAGAAAGTCAGGACTGGAATTC  1222
      ||||||||||||||||||||||||||||
seq2  ACACCAAAGAAAGTCAGGACTGGAATTC  1213

seq1: chr6_117365567_117366362
seq2: B6Ng01-192A09.g_66_861

seq1  GAATTCTGGGAGAGAACAGCAGCCCATCTCATTAAAGGGCAATTACTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGAGAACAGCAGCCCATCTCATTAAAGGGCAATTACTCTG  50

seq1  CCTATCTCTGTAGAGGAACTCAAGGTGAACCTGCCTTCCTAAGAAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCTGTAGAGGAACTCAAGGTGAACCTGCCTTCCTAAGAAGGCTT  100

seq1  GCCTTCTTGAGGGGATATCCTTTAGCTAGCCTCTGACCCTGCCCAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTGAGGGGATATCCTTTAGCTAGCCTCTGACCCTGCCCAACTGG  150

seq1  AATGTCTCCAACCAGACTGTAAACTGCACCTCCTTAGCCAGAAGGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCCAACCAGACTGTAAACTGCACCTCCTTAGCCAGAAGGAATGA  200

seq1  GTTTTCCTTGAATGGACCTTGACTGCTCGCTACTGTGTCCATAACAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTTGAATGGACCTTGACTGCTCGCTACTGTGTCCATAACAACCC  250

seq1  AATTAGTTCAATGGAACCTCTGTACCTCAGAATAACTCTGGGAGATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTCAATGGAACCTCTGTACCTCAGAATAACTCTGGGAGATAAAA  300

seq1  CCCTTCTCTAAGCAGCAGGCATTGAAACAATTCAAAAATAACCTGTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTAAGCAGCAGGCATTGAAACAATTCAAAAATAACCTGTCAGC  350

seq1  TCAAAGAAGCTGACAAAACTAAGAGTACCGACAGGGGAGAATCTTACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAGCTGACAAAACTAAGAGTACCGACAGGGGAGAATCTTACCTC  400

seq1  GGGTCAGACTTTCTCAAGAGTCCAAAACAAAGTCCAAATAGTCACGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGACTTTCTCAAGAGTCCAAAACAAAGTCCAAATAGTCACGACAC  450

seq1  TGCTTCACCAAGTAGAGGTTTAAAAGTAACTGTCTTCAGCTGAAGTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACCAAGTAGAGGTTTAAAAGTAACTGTCTTCAGCTGAAGTGGGA  500

seq1  GGATGTGAGGCCCCAATCTGAAGAGATGCCTCAGCTGCATGGGGGTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGAGGCCCCAATCTGAAGAGATGCCTCAGCTGCATGGGGGTCCTC  550

seq1  CAGCCCTTTCCTCCCAGGTGTGGTCAACTTGTACTGCTGGTACCCAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTTCCTCCCAGGTGTGGTCAACTTGTACTGCTGGTACCCAGAAC  600

seq1  ATGTCTTCTTTAGAAATGGGCCATGGTCGTGTGCGTTTTTAATCCCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCTTTAGAAATGGGCCATGGTCGTGTGCGTTTTTAATCCCAGCA  650

seq1  CTTGAGAGGCAGAGATAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGGCAGAGATAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCT  700

seq1  ACTGAGTGAGTAACAAACAGGACAGGAAGAGCTACACAGAGAAATTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGAGTAACAAACAGGACAGGAAGAGCTACACAGAGAAATTCTAT  750

seq1  CTTGATTAAAACCAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTAAAACCAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  796