BAC Information

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BAC

Clone NameB6Ng01-192F03
Chromosome6 (Build37)
Map Location 33,091,615 - 33,213,496
singlet/doubletdoublet
Overlap geneGm1401, Exoc4
Upstream genePlxna4, Chchd3, LOC100039118
Downstream geneLrguk, Slc35b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192F03.bB6Ng01-192F03.g
ACCGA015589GA015590
length343490
definitionB6Ng01-192F03.b B6Ng01-192F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,091,615 - 33,091,957)(33,212,999 - 33,213,496)
sequence
caagtatgtaccaccaccatacttgactaaagacaccattgtataaacgc
caaccgtttatttagtgattcaacagcttctacatattagaacccatagc
cttcttttcctgtcgtggatatacacactcttgtctttcccttggtgact
agatttagtgtgaaagtttacatatctccttctttttctgtacacatttt
cctgaaggggaaccaagtggaggtggcatgctcaagagaattacaatgag
taagaaagaggtggcctgaccaaggaaacctgggaagaaaccggttatca
gtcttttcaaaagaccaggaagcattggggtgggggggggagg

taactgcctaggctgggctccttagtccaccgaatttactacccagagga
cttcagctactgaatcttattttgttcatctataaaatgaaaagaagata
cattccttataggatggaggtgttaagcacaatcaaacaaagcctcaaac
accactatcagtcaacaaacgttgtccgtagttattagcgatcattgcta
caagaacggtttcgctttggaggggtatttatctttgtttgtgtttgttg
gttggttggttttgaggaagttgtttgtggttttcattttctaagacagt
ggctggctagggagctcatgctggcctaccatgactgtacagaccaagct
gaccactagtatcctcctgcctctacctcccaagtgttggcgttacagac
aagcaccaccacactgggcactacaatgcagttttattttaaaaaaaaaa
atcttcgttctggtggacagtccatgctgatgataagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33091615_33091957
seq2: B6Ng01-192F03.b_49_391

seq1  CAAGTATGTACCACCACCATACTTGACTAAAGACACCATTGTATAAACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGTACCACCACCATACTTGACTAAAGACACCATTGTATAAACGC  50

seq1  CAACCGTTTATTTAGTGATTCAACAGCTTCTACATATTAGAACCCATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGTTTATTTAGTGATTCAACAGCTTCTACATATTAGAACCCATAGC  100

seq1  CTTCTTTTCCTGTCGTGGATATACACACTCTTGTCTTTCCCTTGGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCCTGTCGTGGATATACACACTCTTGTCTTTCCCTTGGTGACT  150

seq1  AGATTTAGTGTGAAAGTTTACATATCTCCTTCTTTTTCTGTACACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGTGTGAAAGTTTACATATCTCCTTCTTTTTCTGTACACATTTT  200

seq1  CCTGAAGGGGAACCAAGTGGAGGTGGCATGCTCAAGAGAATTACAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGGGAACCAAGTGGAGGTGGCATGCTCAAGAGAATTACAATGAG  250

seq1  TAAGAAAGAGGTGGCCTGACCAAGGAAACCTGGGAAGAAACCGGTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGAGGTGGCCTGACCAAGGAAACCTGGGAAGAAACCGGTTATCA  300

seq1  GTCTTTTCAAAAGACCAGGAAGCATTGGGGTGGGGGGGGGAGG  343
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCAAAAGACCAGGAAGCATTGGGGTGGGGGGGGGAGG  343


seq1: chr6_33212999_33213496
seq2: B6Ng01-192F03.g_60_555 (reverse)

seq1  AATCTTGCTCATCAGCATGGACTGTCCACCAGAACGAAGATTTTTTTTTT  50
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTT-ATCATCAGCATGGACTGTCCACCAGAACGAAGATTTTTTTTTT  49

seq1  TAAACTAAAACTGCATTGTAGTGCCCAGTGTGGTGGTGCTTGTCTGTAAC  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAACTGCATTGTAGTGCCCAGTGTGGTGGTGCTTGTCTGTAAC  99

seq1  GCCAACACTTGGGAGGTAGAGGCAGGAGGATAGTAGTGGTCAGCTTGGTC  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCAACACTTGGGAGGTAGAGGCAGGAGGATACTAGTGGTCAGCTTGGTC  149

seq1  TGTACAGTGATTGGTAGGCCAGCCTGAGCTCCATAGCAAGCCACTGTCTT  200
      |||||||| | |||||||||||| |||||||| |||| ||||||||||||
seq2  TGTACAGTCA-TGGTAGGCCAGCATGAGCTCCCTAGCCAGCCACTGTCTT  198

seq1  AGAAAATGAAAACCACAAACAACTTCCTCAAAACCAACCAACCAACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGAAAACCACAAACAACTTCCTCAAAACCAACCAACCAACAAAC  248

seq1  ACAAACAAAGATAAATACCCCTCCAAAGCGAAACCGTTCTTGTAGCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAGATAAATACCCCTCCAAAGCGAAACCGTTCTTGTAGCAATG  298

seq1  ATCGCTAATAACTACGGACAACGTTTGTTGACTGATAGTGGTGTTTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTAATAACTACGGACAACGTTTGTTGACTGATAGTGGTGTTTGAGG  348

seq1  CTTTGTTTGATTGTGCTTAACACCTCCATCCTATAAGGAATGTATCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTGATTGTGCTTAACACCTCCATCCTATAAGGAATGTATCTTCT  398

seq1  TTTCATTTTATAGATGAACAAAATAAGATTCAGTAGCTGAAGTCCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTATAGATGAACAAAATAAGATTCAGTAGCTGAAGTCCTCTGG  448

seq1  GTAGTAAATTCGGTGGACTAAGGAGCCCAGCCTAGGCAGTTAGAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAATTCGGTGGACTAAGGAGCCCAGCCTAGGCAGTTAGAATTC  496


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