BAC Information

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BAC

Clone NameB6Ng01-192G11
Chromosome6 (Build37)
Map Location 81,217,844 - 81,322,698
singlet/doubletdoublet
Overlap geneLOC100042991
Upstream geneLOC100043390
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192G11.bB6Ng01-192G11.g
ACCGA015652GA015653
length1,1011,121
definitionB6Ng01-192G11.b B6Ng01-192G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,217,844 - 81,218,943)(81,321,585 - 81,322,698)
sequence
gaattctgcaggctccaacaggcaagagaatggcttccagaactcaggtc
tcagacttaaagaagcataggagattacggtctgttgttaacaagacaac
agtctctattcctggtttccataatgcacttactctaaaatcctctggat
tttcattgagccactgcagccacttccagaaagacagaattaccatagtt
cttgaccctttttctgtatagaatctaagtgcctatagaaagcccagtgt
ttggcagagttgtctttataactgtgtgtctagtggagggaagtgatcca
gaaccaagtgaaacagaacaggagcatgagcagccaacaagtgaaaacct
ccacccatgtagccactgaggttaagcaaaccaccagaccatagtccttc
accacaggtcaaggaacagaataaatataggcaaggttggctcctcttgc
aatagaattcaggaataagaggtatacaatgcattaaagttgtcagcatg
agatgaagatgctgaaagtgatgccgaagcatccaaggcaaaaatagaaa
ggcctcctgtcttactgtctaacaccatttagcatggagtatgtttagtg
agcatagtgtcttattttattttcctgttgttgcaattaaatactctgac
aaaagcaacttaagggagaaaaggtttatttgtccttcagtcccaagtta
cactgtttcattaagagaaactcgaggtggttagagtttgaggttactaa
gcacattacatcctaactaattaatgtatgcttaccactgcccagctccc
ttcctccttttagttcagggttcaatccatgaaatggcaccacacaaatt
cagggaataccttccttaacacaagtaagaaaatcccccaacgggctgga
gaaatggttcagcagctaagtgtgttactgttttgttgttgtgttgtgtg
tgtgttttaaaggaccagagtgttgtctcagccccacatctcagagacac
ctcaccaaatacctgtaagtctaacctcttaggggaacagattttcctct
tcaggacctcccattatttacctaatttcaccaagtggagcaccacccca
c

gaattcaaatcctactgcttacaaagcaggcacttctttctgacatgtat
acctagcgcaaacactgtggtttgattggcattgcaactaagcagacgct
taatgaccacagcagaataaatttgtaagagctaggaggaaatgagtgga
tatgaagccacagcaagtacattgccctctctttggggacatcacagatg
tggacaatatgctctgattcttctgccatctgcatctcctctccagtttg
ggtcagtccttcagtcatgggataagcatctgcaggtctctgttacatca
actctactttgagaagaggaaaagatgtgatgatgtaatttgttaaacac
actcatcagtatttcttcacttcctctgggcaatgggggaagtgtaatca
gaggatagtttgtttggtttccatatatatatatatatatatatatatat
atatatatatatggatacacacacacacacatttgctccttcacacacca
aattctagtttatcctcatttctgtggttaatttagagttatcattctct
ttcatttggtctcagagatcctgaaaataaccatgaaagtaagatacatc
tttctagatcagaaaggtcaaactttttctccatttgctaatttcatccc
gttgctaatttcataccatgaagagtcaactgtgggaaaatgtgtggagt
tcgggaagtgggaagtttgctttgaagtccccattctttctacctctgtc
tttagctgcttcccatcagataggtatattgaacaatatgaaacactttg
agggaagttggctctatgggttagggacacattccatttgtttctgtgta
aggcttagaaatggaatgttctttcatttctctttccctttaaaaatgcc
attgtgtctagtaaagaaaaagtttcaattagttagcaatttcatatcca
gacttttccattttgagaacaagattaaatgcttttaccgtgttctgatt
tttgataaccagttttacattgaaatggtgtaagaaagaaaagaattcac
agtgggaatatccactccatgtcgtttttgttttattgccacaggttaat
ctagaactactaaaagctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_81217844_81218943
seq2: B6Ng01-192G11.b_46_1146

seq1  GAATTCTGCAGGCTCCAACAGGCAAGAGAATGGCTTCCAGAACTCAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGCTCCAACAGGCAAGAGAATGGCTTCCAGAACTCAGGTC  50

seq1  TCAGACTTAAAGAAGCATAGGAGATTACGGTCTGTTGTTAACAAGACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTAAAGAAGCATAGGAGATTACGGTCTGTTGTTAACAAGACAAC  100

seq1  AGTCTCTATTCCTGGTTTCCATAATGCACTTACTCTAAAATCCTCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTATTCCTGGTTTCCATAATGCACTTACTCTAAAATCCTCTGGAT  150

seq1  TTTCATTGAGCCACTGCAGCCACTTCCAGAAAGACAGAATTACCATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGAGCCACTGCAGCCACTTCCAGAAAGACAGAATTACCATAGTT  200

seq1  CTTGACCCTTTTTCTGTATAGAATCTAAGTGCCTATAGAAAGCCCAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCCTTTTTCTGTATAGAATCTAAGTGCCTATAGAAAGCCCAGTGT  250

seq1  TTGGCAGAGTTGTCTTTATAACTGTGTGTCTAGTGGAGGGAAGTGATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGAGTTGTCTTTATAACTGTGTGTCTAGTGGAGGGAAGTGATCCA  300

seq1  GAACCAAGTGAAACAGAACAGGAGCATGAGCAGCCAACAAGTGAAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGTGAAACAGAACAGGAGCATGAGCAGCCAACAAGTGAAAACCT  350

seq1  CCACCCATGTAGCCACTGAGGTTAAGCAAACCACCAGACCATAGTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATGTAGCCACTGAGGTTAAGCAAACCACCAGACCATAGTCCTTC  400

seq1  ACCACAGGTCAAGGAACAGAATAAATATAGGCAAGGTTGGCTCCTCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGTCAAGGAACAGAATAAATATAGGCAAGGTTGGCTCCTCTTGC  450

seq1  AATAGAATTCAGGAATAAGAGGTATACAATGCATTAAAGTTGTCAGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTCAGGAATAAGAGGTATACAATGCATTAAAGTTGTCAGCATG  500

seq1  AGATGAAGATGCTGAAAGTGATGCCGAAGCATCCAAGGCAAAAATAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGATGCTGAAAGTGATGCCGAAGCATCCAAGGCAAAAATAGAAA  550

seq1  GGCCTCCTGTCTTACTGTCTAACACCATTTAGCATGGAGTATGTTTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTGTCTTACTGTCTAACACCATTTAGCATGGAGTATGTTTAGTG  600

seq1  AGCATAGTGTCTTATTTTATTTTCCTGTTGTTGCAATTAAATACTCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTGTCTTATTTTATTTTCCTGTTGTTGCAATTAAATACTCTGAC  650

seq1  AAAAGCAACTTAAGGGAGAAAAGGTTTATTTGTCCTTCAGTCCCAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACTTAAGGGAGAAAAGGTTTATTTGTCCTTCAGTCCCAAGTTA  700

seq1  CACTGTTTCATTAAGAGAAACTCGAGGTGGTTAGAGTTTGAGGTTACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTCATTAAGAGAAACTCGAGGTGGTTAGAGTTTGAGGTTACTAA  750

seq1  GCACATTACATCCTAACTAATTAATGTATGCTTACCACTGCCCAGCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTACATCCTAACTAATTAATGTATGCTTACCACTGCCCAGCTCCC  800

seq1  TTCCTCCTTTTAGTTCAGGGTTCAATCCATGAAATGGCACCACACAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTTTTAGTTCAGGGTTCAATCCATGAAATGGCACCACACAAATT  850

seq1  CAGGGAATACCTTCCTTAACACAAGTAAGAAAATCCCCCAACGGGCTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATACCTTCCTTAACACAAGTAAGAAAATCCCCCAACGGGCTGGA  900

seq1  GAAATGGTTCAGCAGCTAAGTGTGTTTACTGTTTTGTTGTTGTTGTTGTT  950
      |||||||||||||||||||||||| |||||||||||||||||    ||||
seq2  GAAATGGTTCAGCAGCTAAGTGTG-TTACTGTTTTGTTGTTG----TGTT  945

seq1  GTTGTTGTTGTTTTTAAAGGACCAGAGTGTTGTTCTCAG-CACACATCTC  999
      ||   |||   ||||||||||||||||||||| |||||| | ||||||||
seq2  GT--GTGTGTGTTTTAAAGGACCAGAGTGTTG-TCTCAGCCCCACATCTC  992

seq1  AGAGACAACTCA-CAATAACCTGTAAGTCTAA-CTC-TAGGGGAACAGA-  1045
      ||||||| |||| |||  |||||||||||||| ||| |||||||||||| 
seq2  AGAGACACCTCACCAAATACCTGTAAGTCTAACCTCTTAGGGGAACAGAT  1042

seq1  TTTCCTCTTCAGGA-CTCC--ATAATTACCTA--TTCACC-AGT-GAGCA  1088
      |||||||||||||| ||||   || |||||||  |||||| ||| |||||
seq2  TTTCCTCTTCAGGACCTCCCATTATTTACCTAATTTCACCAAGTGGAGCA  1092

seq1  CACCCACCCCAC  1100
         |||||||||
seq2  ---CCACCCCAC  1101


seq1: chr6_81321585_81322698
seq2: B6Ng01-192G11.g_68_1188 (reverse)

seq1  ATTAGCTTTTAGTAATTTCCTGATTTACTTGTGGCAAACAAACAAAAACA  50
      ||||||||||||| | |||  |||| || ||||||||  |||||||||| 
seq2  ATTAGCTTTTAGT-AGTTCTAGATTAACCTGTGGCAATAAAACAAAAACG  49

seq1  CCAT-GAGTTGATATTTCCCACTGTGATATCTTTTCTTTCCTTACA-CAT  98
       ||| |||| |||| ||||||||||||  |||||||||| |||||| |||
seq2  ACATGGAGTGGATA-TTCCCACTGTGAATTCTTTTCTTT-CTTACACCAT  97

seq1  TCCAATCCTTAAACTTGGTTATC-AAAATCAGAACACGGTAAAAGCATTT  147
      | ||||   ||||  |||||||| ||||||||||||||||||||||||||
seq2  TTCAAT--GTAAAACTGGTTATCAAAAATCAGAACACGGTAAAAGCATTT  145

seq1  -ATCTTGTTCTCAAA--TGAAAAGTCTGGATATG-AATTGCTAACT-ATT  192
       ||||||||||||||   |||||||||||||||| ||||||||||| |||
seq2  AATCTTGTTCTCAAAATGGAAAAGTCTGGATATGAAATTGCTAACTAATT  195

seq1  GAAACTTTT--CTTACTAGAACACAATGGCATTTTTAAAGGGAAAGAGAA  240
      |||||||||   ||||||| ||||||||||||||||||||||||||||||
seq2  GAAACTTTTTCTTTACTAG-ACACAATGGCATTTTTAAAGGGAAAGAGAA  244

seq1  ATGAAAGAACATTCCATTTCTAAGCCTTACACAGAAAC-AATGGAATGTG  289
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGAAAGAACATTCCATTTCTAAGCCTTACACAGAAACAAATGGAATGTG  294

seq1  TCCCTAACCCATAGAGCC-ACTTCCCTCAAAGTGTTTCATATTGTTCAAT  338
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCCTAACCCATAGAGCCAACTTCCCTCAAAGTGTTTCATATTGTTCAAT  344

seq1  ATACCTATCTGATGGGAAGCAGCT-AAGACAGAGGTAGAAAGAATGGGGA  387
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATACCTATCTGATGGGAAGCAGCTAAAGACAGAGGTAGAAAGAATGGGGA  394

seq1  CTTCAAAGCAAACTTCCCACTTCCCGAACTCCACACATTTTCCCACAGTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCAAACTTCCCACTTCCCGAACTCCACACATTTTCCCACAGTT  444

seq1  GACTCTTCATGGTATGAAATTAGCAACGGGATGAAATTAGCAAATGGAGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCATGGTATGAAATTAGCAACGGGATGAAATTAGCAAATGGAGA  494

seq1  AAAAGTTTGACCTTTCTGATCTAGAAAGATGTATCTTACTTTCATGGTTA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTGACCTTTCTGATCTAGAAAGATGTATCTTACTTTCATGGTTA  544

seq1  TTTTCAGGATCTCTGAGACCAAATGAAAGAGAATGATAACTCTAAATTAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGATCTCTGAGACCAAATGAAAGAGAATGATAACTCTAAATTAA  594

seq1  CCACAGAAATGAGGATAAACTAGAATTTGGTGTGTGAAGGAGCAAATGTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAATGAGGATAAACTAGAATTTGGTGTGTGAAGGAGCAAATGTG  644

seq1  TGTGTGTGTGTATCCATATATATATATATATATATATATATATATATATA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTATCCATATATATATATATATATATATATATATATATATA  694

seq1  TATATGGAAACCAAACAAACTATCCTCTGATTACACTTCCCCCATTGCCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAAACCAAACAAACTATCCTCTGATTACACTTCCCCCATTGCCC  744

seq1  AGAGGAAGTGAAGAAATACTGATGAGTGTGTTTAACAAATTACATCATCA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGTGAAGAAATACTGATGAGTGTGTTTAACAAATTACATCATCA  794

seq1  CATCTTTTCCTCTTCTCAAAGTAGAGTTGATGTAACAGAGACCTGCAGAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTCCTCTTCTCAAAGTAGAGTTGATGTAACAGAGACCTGCAGAT  844

seq1  GCTTATCCCATGACTGAAGGACTGACCCAAACTGGAGAGGAGATGCAGAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCCCATGACTGAAGGACTGACCCAAACTGGAGAGGAGATGCAGAT  894

seq1  GGCAGAAGAATCAGAGCATATTGTCCACATCTGTGATGTCCCCAAAGAGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGAATCAGAGCATATTGTCCACATCTGTGATGTCCCCAAAGAGA  944

seq1  GGGCAATGTACTTGCTGTGGCTTCATATCCACTCATTTCCTCCTAGCTCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGTACTTGCTGTGGCTTCATATCCACTCATTTCCTCCTAGCTCT  994

seq1  TACAAATTTATTCTGCTGTGGTCATTAAGCGTCTGCTTAGTTGCAATGCC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTTATTCTGCTGTGGTCATTAAGCGTCTGCTTAGTTGCAATGCC  1044

seq1  AATCAAACCACAGTGTTTGCGCTAGGTATACATGTCAGAAAGAAGTGCCT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACCACAGTGTTTGCGCTAGGTATACATGTCAGAAAGAAGTGCCT  1094

seq1  GCTTTGTAAGCAGTAGGATTTGAATTC  1114
      |||||||||||||||||||||||||||
seq2  GCTTTGTAAGCAGTAGGATTTGAATTC  1121


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