BAC Information

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BAC

Clone NameB6Ng01-194H10
Chromosome6 (Build37)
Map Location 27,415,893 - 27,514,042
singlet/doubletdoublet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194H10.bB6Ng01-194H10.g
ACCGA017150GA017151
length1,0361,059
definitionB6Ng01-194H10.b B6Ng01-194H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,513,007 - 27,514,042)(27,415,893 - 27,416,948)
sequence
gaattctctacatcctgtgaccaaggcatatagtgtttatatctaatatt
actctagtgggtatccaataatattgaaatggcagtaacatcagtttgta
gcagtgtctctgccacacaaaacaagaacttgagagaaggtataccacat
gtggcactggaattttatttgggggtccatggcttctgtgaggaacaata
tccctgatgtaaggtaacgaacatgatgcttataaagtagtagagattcc
attgtgaaatttgtaagcatcctttcctttagttatcttttctttcattt
cctcttctgccctactcttacatagcacccccacttacatatccttatca
ttctcctctctctcttcatgttatctagtttgttatttcatttgtttttg
ctgctgctactgctgctgttgttaaaaatcctcagtagaaggtggttggg
tttttttttttttgaactcttgcacatatggggcaatatttctgtttctt
gagtttgtctgggcacacactcttgtgactgcatctccactcaagtctta
gattgtttcattgtcttcctgcatttcatatgagagagattttagaaatg
actgatttttcattcctatttgttaaggatttttctttggttccaaagct
tgagacttatttactttttaagtcttgttattcaaaaaataatttctagt
gtggataggtaatcgtgttttattataaagttactgaatttttttgagat
taagtttttcattctcagatcttacaagaaggagaataaaacaaagctcc
taggtaagacagagaaattgcaattttaaatgtaaactgtctttttataa
ggcttccatagaaaaggcttgatttccagccactgacactatcctaaggt
gatttgataatgtggatgctgggttattaagaatgacactactggtgcat
ttaagaccttgaaaggctatgaaagctagtctactttaagaagtatgtca
gcaggcacactttgagcagtctgtcttttttggggt

gaattcatggaaaacatctctagggaagtcctatttttgtttcagatacc
acatgaggcaattttttcacattaccaattaaatcctcacatccctgaca
agcacatggtttttgcaatgtgaaaaaatggagtttaggaaagttcatta
gtttggcaaaaataagaacccttaaagtaacttctctacaagatttcttt
ccacttttgcctgaaaatacacgtcaactagactggaaggtatgcacgat
gtgagacagtaaattttgtagatgatacagcacgtatctaatggggaaaa
aaagtcaactattttaatgtaactgtggtatgtctgtcttgtggcaaaat
gtttctttttttatataatgtatcttttagttatatttcatcggccaagt
gaccacagaatacctctgattgtcttaggcacataacaacctcaaacaca
aataagattgccttaaaccaagaatagcgaatggatattggatgatgccc
tctcacacttgtcacactgtgtttagttcataggacccagtggggaagtg
gtaaatattaacgttttccattattattattgaatataattaattcttag
aaacacatgtgtcttagttagggtttttattgctgtgatgaaacaccatg
accaaaagcaactaatagacaaaagagtgtatttggcttatacttcccta
tcaccgtttgtcactgaagcaagttagggcacgaactgaaacaggcagga
tgcagaatctataaagggctgttaattactggcttgctcctcacagcttt
ctcagcctccatttttatagaactcaagggtttcaagtcaaggcatggga
tatatctgcatataaatacatacaaatttatatgtaagtttaatatacat
gtgtatactttctttcttagaaattataaattattttaacatagggattg
aaagataatattaatgtgaatttattttcctactatgaacatcacaataa
attatattcagtgtctgacattccactttcatcactagtttaatttattt
attatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27513007_27514042
seq2: B6Ng01-194H10.b_40_1075 (reverse)

seq1  ACCCC-AAAAAGACAGACTGCTCAAAGTGTGCCTGCTGACATACTTCCTT  49
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  ACCCCAAAAAAGACAGACTGCTCAAAGTGTGCCTGCTGACATACTT-CTT  49

seq1  AAAGTAGACCTAGCTTTTCATAGCCTTTC-AGGTC-TAAATGCACCAGTA  97
      |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
seq2  AAAGTAGA-CTAGC-TTTCATAGCCTTTCAAGGTCTTAAATGCACCAGTA  97

seq1  GTGTCATTCTTTAATAACCCAGCATCCACATTATCAAATCACCTTAGGAT  147
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTC-TTAATAACCCAGCATCCACATTATCAAATCACCTTAGGAT  146

seq1  AGTGTCAGTGGCTGGAAATCAAGCCTTTTCTATGGAAGCCTTAT-AAAAG  196
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTGTCAGTGGCTGGAAATCAAGCCTTTTCTATGGAAGCCTTATAAAAAG  196

seq1  ACAGTTTACATTTAAAATTGCAATTTCTCTGTCTTACCTAGGAGCTTTGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTACATTTAAAATTGCAATTTCTCTGTCTTACCTAGGAGCTTTGT  246

seq1  TTTATTCTCCTTCTTGTAAGATCTGAGAATGAAAAACTTAATCTCAAAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTCCTTCTTGTAAGATCTGAGAATGAAAAACTTAATCTCAAAAA  296

seq1  AATTCAGTAACTTTATAATAAAACACGATTACCTATCCACACTAGAAATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTAACTTTATAATAAAACACGATTACCTATCCACACTAGAAATT  346

seq1  ATTTTTTGAATAACAAGACTTAAAAAGTAAATAAGTCTCAAGCTTTGGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAATAACAAGACTTAAAAAGTAAATAAGTCTCAAGCTTTGGAA  396

seq1  CCAAAGAAAAATCCTTAACAAATAGGAATGAAAAATCAGTCATTTCTAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAAATCCTTAACAAATAGGAATGAAAAATCAGTCATTTCTAAA  446

seq1  ATCTCTCTCATATGAAATGCAGGAAGACAATGAAACAATCTAAGACTTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTCATATGAAATGCAGGAAGACAATGAAACAATCTAAGACTTGA  496

seq1  GTGGAGATGCAGTCACAAGAGTGTGTGCCCAGACAAACTCAAGAAACAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATGCAGTCACAAGAGTGTGTGCCCAGACAAACTCAAGAAACAGA  546

seq1  AATATTGCCCCATATGTGCAAGAGTTCAAAAAAAAAAAAACCCAACCACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCCCCATATGTGCAAGAGTTCAAAAAAAAAAAAACCCAACCACC  596

seq1  TTCTACTGAGGATTTTTAACAACAGCAGCAGTAGCAGCAGCAAAAACAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGAGGATTTTTAACAACAGCAGCAGTAGCAGCAGCAAAAACAAA  646

seq1  TGAAATAACAAACTAGATAACATGAAGAGAGAGAGGAGAATGATAAGGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAACAAACTAGATAACATGAAGAGAGAGAGGAGAATGATAAGGAT  696

seq1  ATGTAAGTGGGGGTGCTATGTAAGAGTAGGGCAGAAGAGGAAATGAAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTGGGGGTGCTATGTAAGAGTAGGGCAGAAGAGGAAATGAAAGA  746

seq1  AAAGATAACTAAAGGAAAGGATGCTTACAAATTTCACAATGGAATCTCTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAACTAAAGGAAAGGATGCTTACAAATTTCACAATGGAATCTCTA  796

seq1  CTACTTTATAAGCATCATGTTCGTTACCTTACATCAGGGATATTGTTCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTATAAGCATCATGTTCGTTACCTTACATCAGGGATATTGTTCCT  846

seq1  CACAGAAGCCATGGACCCCCAAATAAAATTCCAGTGCCACATGTGGTATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCCATGGACCCCCAAATAAAATTCCAGTGCCACATGTGGTATA  896

seq1  CCTTCTCTCAAGTTCTTGTTTTGTGTGGCAGAGACACTGCTACAAACTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTCAAGTTCTTGTTTTGTGTGGCAGAGACACTGCTACAAACTGA  946

seq1  TGTTACTGCCATTTCAATATTATTGGATACCCACTAGAGTAATATTAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGCCATTTCAATATTATTGGATACCCACTAGAGTAATATTAGAT  996

seq1  ATAAACACTATATGCCTTGGTCACAGGATGTAGAGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACTATATGCCTTGGTCACAGGATGTAGAGAATTC  1036


seq1: chr6_27415893_27416948
seq2: B6Ng01-194H10.g_65_1123

seq1  GAATTCATGGAAAACATCTCTAGGGAAGTCCTATTTTTGTTTCAGATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAAAACATCTCTAGGGAAGTCCTATTTTTGTTTCAGATACC  50

seq1  ACATGAGGCAATTTTTTCACATTACCAATTAAATCCTCACATCCCTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGCAATTTTTTCACATTACCAATTAAATCCTCACATCCCTGACA  100

seq1  AGCACATGGTTTTTGCAATGTGAAAAAATGGAGTTTAGGAAAGTTCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGGTTTTTGCAATGTGAAAAAATGGAGTTTAGGAAAGTTCATTA  150

seq1  GTTTGGCAAAAATAAGAACCCTTAAAGTAACTTCTCTACAAGATTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCAAAAATAAGAACCCTTAAAGTAACTTCTCTACAAGATTTCTTT  200

seq1  CCACTTTTGCCTGAAAATACACGTCAACTAGACTGGAAGGTATGCACGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTGCCTGAAAATACACGTCAACTAGACTGGAAGGTATGCACGAT  250

seq1  GTGAGACAGTAAATTTTGTAGATGATACAGCACGTATCTAATGGGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAGTAAATTTTGTAGATGATACAGCACGTATCTAATGGGGAAAA  300

seq1  AAAGTCAACTATTTTAATGTAACTGTGGTATGTCTGTCTTGTGGCAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAACTATTTTAATGTAACTGTGGTATGTCTGTCTTGTGGCAAAAT  350

seq1  GTTTCTTTTTTTATATAATGTATCTTTTAGTTATATTTCATCGGCCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTTTTATATAATGTATCTTTTAGTTATATTTCATCGGCCAAGT  400

seq1  GACCACAGAATACCTCTGATTGTCTTAGGCACATAACAACCTCAAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGAATACCTCTGATTGTCTTAGGCACATAACAACCTCAAACACA  450

seq1  AATAAGATTGCCTTAAACCAAGAATAGCGAATGGATATTGGATGATGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATTGCCTTAAACCAAGAATAGCGAATGGATATTGGATGATGCCC  500

seq1  TCTCACACTTGTCACACTGTGTTTAGTTCATAGGACCCAGTGGGGAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACTTGTCACACTGTGTTTAGTTCATAGGACCCAGTGGGGAAGTG  550

seq1  GTAAATATTAACGTTTTCCATTATTATTATTGAATATAATTAATTCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATTAACGTTTTCCATTATTATTATTGAATATAATTAATTCTTAG  600

seq1  AAACACATGTGTCTTAGTTAGGGTTTTTATTGCTGTGATGAAACACCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATGTGTCTTAGTTAGGGTTTTTATTGCTGTGATGAAACACCATG  650

seq1  ACCAAAAGCAACTAATAGACAAAAGAGTGTATTTGGCTTATACTTCCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGCAACTAATAGACAAAAGAGTGTATTTGGCTTATACTTCCCTA  700

seq1  TCACCGTTTGTCACTGAAGCAAGTTAGGGCACGAACTGAAACAGGCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGTTTGTCACTGAAGCAAGTTAGGGCACGAACTGAAACAGGCAGGA  750

seq1  TGCAGAATCTATAAAGGGCTGTTAATTACTGGCTTGCTCCTCACAGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATCTATAAAGGGCTGTTAATTACTGGCTTGCTCCTCACAGCTTT  800

seq1  CTCAGCCTCCATTTTTATAGAACTC-AGGGTTTCAAGTCAAGGCATGGGA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCAGCCTCCATTTTTATAGAACTCAAGGGTTTCAAGTCAAGGCATGGGA  850

seq1  TATATCTGCATATAAATACATACAAATTTATATGTAAGTTTAATATACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGCATATAAATACATACAAATTTATATGTAAGTTTAATATACAT  900

seq1  GTGTATACTTTCTTTCTTAGAAATTATAAATTATTTT-ACATAGGGATTG  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGTATACTTTCTTTCTTAGAAATTATAAATTATTTTAACATAGGGATTG  950

seq1  AAAGATAATATTAATGTGAATTTATTTTCCTACTATGAACATCAC-ATAA  997
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGATAATATTAATGTGAATTTATTTTCCTACTATGAACATCACAATAA  1000

seq1  ATTATA-TCAGTGGTCTGGACCATTCCACTTCAATCACTAATTTTATTTA  1046
      |||||| ||||| |||||   ||||||||||  ||||||| ||| |||||
seq2  ATTATATTCAGT-GTCTG--ACATTCCACTTTCATCACTAGTTTAATTTA  1047

seq1  TT--TTATTTTA  1056
      ||  ||||||||
seq2  TTTATTATTTTA  1059


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