BAC Information

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BAC

Clone NameB6Ng01-194N16
Chromosome6 (Build37)
Map Location 85,210,150 - 85,349,038
singlet/doubletdoublet
Overlap geneSfxn5, Rab11fip5
Upstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1
Downstream geneNoto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194N16.bB6Ng01-194N16.g
ACCGA017434GA017435
length1,164961
definitionB6Ng01-194N16.b B6Ng01-194N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,210,150 - 85,211,282)(85,348,076 - 85,349,038)
sequence
gaattcactacgtagacaagactggaaccaaattcacaaaaatctgcctg
tctctagaatgctgggattaaaggtatgtgccaccatgcctggtgaattt
tgtttttaatctttaactgtgtatgtgtctgtgcctgtgtgtgttgtgtg
tacacacatgcatgtgcacatgagttcagatgactgtggaggccagaaga
ggacatcagatccttgggagatggcattagaggcagttgtgtggagcctg
attcgggtgctaggaactgaactttaggcctctgtcagagtcatatgtgt
ttttacctgctgagccacctctctagtcctaaagctttcttctaaacttc
atgctgcacacaggaacagcatatgacaggagctctgtgacacaaaacct
ttagtgtcattagctacatagccaacagcatccttggttctgcaaggcct
tcagagagatcccaggtgggctaatgccaaagccatctctcatcttatct
gctatgtccttcctcaaactggacacacaacttggagacagctctgttgg
gacaggccttagcacagcacctctacagcttccaccccaccccagggaag
gttgtctaattcagtctcacctttgcccaggcgtcggcccctgctaccag
ctggaaggctccttcctatctttgtaattttgactccagtctggtctaca
tagtgaattctaggccagctagggctacttggtgagatcatgtctaaaaa
cataaatgaataaataaaaatgaaattaaattaaacatctttaatgcgag
tctttttttttaaaggtggattggagccctagcaggcttcttttggccaa
gggctgtggctcagtttggtagagacttttcctaaccctgcttgaaaatc
ctggtttcagaccccagccactgactaaacccaggtgtggtagcacatct
tgttaattcttagccccttaaggaggtagagactggaaggatcagggagt
tccaaagtcccttctcagctgcttggagggccatcttgggctattatgtt
aagcatgtcttggaaacatacaaaaaccaataaagccatgaaaaacccaa
aaggaattcctggaagagatttctcctggaacaggagtttctcaaaggcc
atcagggaagccac
gaattcatgcatatacacagatacattaacgtcatgaaaaaaattaaaaa
cacacaaaactaacctttaaaaacagcagtgaagaattcctgaaaagaca
gaatggaagatggcaacttagagccatggagaggtgtctctgaataaaca
ctaggtggccctgcaaggacccggattcagttcccagaacccacaggaca
actcacaaccctaagtccagttccaggggatctgacaacctcttttggct
tccaggggcactgcatgcacacagcacacataataaatataagcaaaacc
aattgtgcacataaaataaacaaataaatagatccttagcttgggggagt
taaggtttttgaatctgcatttttcaatatttatttcaactcaaaataag
ttcccattatacacatgtacactgcagccaagcatccaacggcccacaaa
aggatgttttcatccagtacagacagaccagggccctggcattttgtttt
tgttttttcctgtttctgagacagggtttcgtgtaccccagactggccca
tctctagctcctgaattctgggattacaggtatgagtcaccatggacatt
tctatcacttctttctttaaacaaactttttatttctttactttttttta
tgtgtttgagtgctttgcctgaatgtatgtctgtgacccacatgcatgcc
tggtggaagccagaagaggatgtcaggtcccctggaactggacttgtgga
tggttgtgaatggccatgtgggtgctggggtccccttacaagagctgtaa
taggtacacttaacccatgagtatgtcttcagtcctcagtcggctctcat
ttctaattttccccttaaaacacatttttcctggcatgactaacatctgt
gattccagctgtgggaagtaagacagagagaagaagtccaaatcaatcct
tggctattcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85210150_85211282
seq2: B6Ng01-194N16.b_48_1211

seq1  GAATTCACTACGTAGACAAGACTGGAACCAAATTCACAAAAATCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACGTAGACAAGACTGGAACCAAATTCACAAAAATCTGCCTG  50

seq1  TCTCTAGAATGCTGGGATTAAAGGTATGTGCCACCATGCCTGGTGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAATGCTGGGATTAAAGGTATGTGCCACCATGCCTGGTGAATTT  100

seq1  TGTTTTTAATCTTTAACTGTGTATGTGTCTGTGCCTGTGTGTGTTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAATCTTTAACTGTGTATGTGTCTGTGCCTGTGTGTGTTGTGTG  150

seq1  TACACACATGCATGTGCACATGAGTTCAGATGACTGTGGAGGCCAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATGCATGTGCACATGAGTTCAGATGACTGTGGAGGCCAGAAGA  200

seq1  GGACATCAGATCCTTGGGAGATGGCATTAGAGGCAGTTGTGTGGAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCAGATCCTTGGGAGATGGCATTAGAGGCAGTTGTGTGGAGCCTG  250

seq1  ATTCGGGTGCTAGGAACTGAACTTTAGGCCTCTGTCAGAGTCATATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGGTGCTAGGAACTGAACTTTAGGCCTCTGTCAGAGTCATATGTGT  300

seq1  TTTTACCTGCTGAGCCACCTCTCTAGTCCTAAAGCTTTCTTCTAAACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTGCTGAGCCACCTCTCTAGTCCTAAAGCTTTCTTCTAAACTTC  350

seq1  ATGCTGCACACAGGAACAGCATATGACAGGAGCTCTGTGACACAAAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCACACAGGAACAGCATATGACAGGAGCTCTGTGACACAAAACCT  400

seq1  TTAGTGTCATTAGCTACATAGCCAACAGCATCCTTGGTTCTGCAAGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTCATTAGCTACATAGCCAACAGCATCCTTGGTTCTGCAAGGCCT  450

seq1  TCAGAGAGATCCCAGGTGGGCTAATGCCAAAGCCATCTCTCATCTTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGATCCCAGGTGGGCTAATGCCAAAGCCATCTCTCATCTTATCT  500

seq1  GCTATGTCCTTCCTCAAACTGGACACACAACTTGGAGACAGCTCTGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTCCTTCCTCAAACTGGACACACAACTTGGAGACAGCTCTGTTGG  550

seq1  GACAGGCCTTAGCACAGCACCTCTACAGCTTCCACCCCACCCCAGGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCCTTAGCACAGCACCTCTACAGCTTCCACCCCACCCCAGGGAAG  600

seq1  GTTGTCTAATTCAGTCTCACCTTTGCCCAGGCGTCGGCCCCTGCTACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAATTCAGTCTCACCTTTGCCCAGGCGTCGGCCCCTGCTACCAG  650

seq1  CTGGAAGGCTCCTTCCTATCTTTGTAATTTTGACTCCAGTCTGGTCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGCTCCTTCCTATCTTTGTAATTTTGACTCCAGTCTGGTCTACA  700

seq1  TAGTGAATTCTAGGCCAGCTAGGGCTACTTGGTGAGATCATGTCTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATTCTAGGCCAGCTAGGGCTACTTGGTGAGATCATGTCTAAAAA  750

seq1  CATAAATGAATAAATAAAAATGAAATTAAATTAAACATCTTTAATGCGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGAATAAATAAAAATGAAATTAAATTAAACATCTTTAATGCGAG  800

seq1  TC-TTTTTTTTAAAGGTGGATTGGAGCCCTAGCAGGCTTC-TTTGGCC-A  847
      || ||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  TCTTTTTTTTTAAAGGTGGATTGGAGCCCTAGCAGGCTTCTTTTGGCCAA  850

seq1  GGGCTGTGGCTCAG-TTGGTAGAGAACTTTCCTAA-CCTGCTTGAAAATC  895
      |||||||||||||| ||||||||||  |||||||| ||||||||||||||
seq2  GGGCTGTGGCTCAGTTTGGTAGAGACTTTTCCTAACCCTGCTTGAAAATC  900

seq1  CTGG-TTCAGACCCCAG-CACTGACTAAA-CCAGGTGTGGTAGCACATCT  942
      |||| |||||||||||| ||||||||||| ||||||||||||||||||||
seq2  CTGGTTTCAGACCCCAGCCACTGACTAAACCCAGGTGTGGTAGCACATCT  950

seq1  --GTAAT--CTAGCCC--TTAGGAGGTAGAGACTGG-AGGATCA-GGAGT  984
         ||||   ||||||  | |||||||||||||||| ||||||| |||||
seq2  TGTTAATTCTTAGCCCCTTAAGGAGGTAGAGACTGGAAGGATCAGGGAGT  1000

seq1  T-CAAAGT-CCTCTTCAGCTGCTTTGA-GGCCATCTTGGGCTA-TATG-T  1029
      | |||||| |||  |||||||||| || ||||||||||||||| |||| |
seq2  TCCAAAGTCCCTTCTCAGCTGCTTGGAGGGCCATCTTGGGCTATTATGTT  1050

seq1  AAGCATGTCTT-GAAACA-ACAAAAA-CAATAAAG-CAT-AAAAAACCAA  1074
      ||||||||||| |||||| ||||||| |||||||| ||| ||||| ||||
seq2  AAGCATGTCTTGGAAACATACAAAAACCAATAAAGCCATGAAAAACCCAA  1100

seq1  AAG---ATCCT-GAAGAGATTTCTTTCTGG-ACAGGAGTTTCTC-AAGGC  1118
      |||    |||| ||||||||||| | |||| ||||||||||||| |||||
seq2  AAGGAATTCCTGGAAGAGATTTC-TCCTGGAACAGGAGTTTCTCAAAGGC  1149

seq1  CCACAGGGAAGCCAC  1133
      |  ||||||||||||
seq2  CATCAGGGAAGCCAC  1164

seq1: chr6_85348076_85349038
seq2: B6Ng01-194N16.g_68_1028 (reverse)

seq1  TTGTATAGCCAAGG-CTGATCTTGGACTTCTCCTCTCCTGTCTTTACTTC  49
      ||| ||||||||||  |||| |||||||||| |||| ||||| |||||||
seq2  TTGAATAGCCAAGGATTGAT-TTGGACTTCTTCTCT-CTGTC-TTACTTC  47

seq1  CCAACAGCTGGAATCACAGATGTTAGTCATGCCAGGAAAAATGTGTTTTA  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CC-ACAGCTGGAATCACAGATGTTAGTCATGCCAGGAAAAATGTGTTTTA  96

seq1  AGGGGAAAATTAGAAATGAGAG-CGACTGAGGACTGAAGACATAACTCAT  148
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  AGGGGAAAATTAGAAATGAGAGCCGACTGAGGACTGAAGACAT-ACTCAT  145

seq1  GGGTTAAGTGTACCTATTACAGCTCTTGT-AGGGGACCCCAGCACCCACA  197
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGTTAAGTGTACCTATTACAGCTCTTGTAAGGGGACCCCAGCACCCACA  195

seq1  TGGCCATTCACAACCATCCACAAGTCCAGTTCCAGGGGACCTGACATCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTCACAACCATCCACAAGTCCAGTTCCAGGGGACCTGACATCCT  245

seq1  CTTCTGGCTTCCACCAGGCATGCATGTGGGTCACAGACATACATTCAGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTTCCACCAGGCATGCATGTGGGTCACAGACATACATTCAGGC  295

seq1  AAAGCACTCAAACACATAAAAAAAAGTAAAGAAATAAAAAGTTTGTTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTCAAACACATAAAAAAAAGTAAAGAAATAAAAAGTTTGTTTAA  345

seq1  AGAAAGAAGTGATAGAAATGTCCATGGTGACTCATACCTGTAATCCCAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGTGATAGAAATGTCCATGGTGACTCATACCTGTAATCCCAGA  395

seq1  ATTCAGGAGCTAGAGATGGGCCAGTCTGGGGTACACGAAACCCTGTCTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGAGCTAGAGATGGGCCAGTCTGGGGTACACGAAACCCTGTCTCA  445

seq1  GAAACAGGAAAAAACAAAAACAAAATGCCAGGGCCCTGGTCTGTCTGTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGAAAAAACAAAAACAAAATGCCAGGGCCCTGGTCTGTCTGTAC  495

seq1  TGGATGAAAACATCCTTTTGTGGGCCGTTGGATGCTTGGCTGCAGTGTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAAACATCCTTTTGTGGGCCGTTGGATGCTTGGCTGCAGTGTAC  545

seq1  ATGTGTATAATGGGAACTTATTTTGAGTTGAAATAAATATTGAAAAATGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATAATGGGAACTTATTTTGAGTTGAAATAAATATTGAAAAATGC  595

seq1  AGATTCAAAAACCTTAACTCCCCCAAGCTAAGGATCTATTTATTTGTTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAAAAACCTTAACTCCCCCAAGCTAAGGATCTATTTATTTGTTTA  645

seq1  TTTTATGTGCACAATTGGTTTTGCTTATATTTATTATGTGTGCTGTGTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGCACAATTGGTTTTGCTTATATTTATTATGTGTGCTGTGTGC  695

seq1  ATGCAGTGCCCCTGGAAGCCAAAAGAGGTTGTCAGATCCCCTGGAACTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGCCCCTGGAAGCCAAAAGAGGTTGTCAGATCCCCTGGAACTGG  745

seq1  ACTTAGGGTTGTGAGTTGTCCTGTGGGTTCTGGGAACTGAATCCGGGTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGGTTGTGAGTTGTCCTGTGGGTTCTGGGAACTGAATCCGGGTCC  795

seq1  TTGCAGGGCCACCTAGTGTTTATTCAGAGACACCTCTCCATGGCTCTAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGGCCACCTAGTGTTTATTCAGAGACACCTCTCCATGGCTCTAAG  845

seq1  TTGCCATCTTCCATTCTGTCTTTTCAGGAATTCTTCACTGCTGTTTTTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCTTCCATTCTGTCTTTTCAGGAATTCTTCACTGCTGTTTTTAA  895

seq1  AGGTTAGTTTTGTGTGTTTTTAATTTTTTTCATGACGTTAATGTATCTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGTTTTGTGTGTTTTTAATTTTTTTCATGACGTTAATGTATCTGT  945

seq1  GTATATGCATGAATTC  963
      ||||||||||||||||
seq2  GTATATGCATGAATTC  961