BAC Information

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BAC

Clone NameB6Ng01-195A07
Chromosome6 (Build37)
Map Location 42,027,135 - 42,028,185
singlet/doubletsinglet
Overlap genenone
Upstream geneTcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva
Downstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195A07.bB6Ng01-195A07.g
ACCGA017554GA017555
length1,0511,212
definitionB6Ng01-195A07.b B6Ng01-195A07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttagtttctattctaattaacattacaacaacctagcataaac
caatcttttcaacaatgacaaatgctaataccttattcttcttgcaatct
tttataccatcttttcatgcaattatattaccttctaacatatgttgctg
agtttttactaggggcatagtatgtatggtcttttattgtgtaggttata
attctaagaaactctacacacactgtaaaggaagttctgtactctgatct
gaggtcacttctcttgttctcctgaaccttctcaaccttctctgagttca
agctattctaattactttgtttcttgaatttgcttaggggcagataacaa
tctccaaggcacagaggagtcttgaaattagggtcaactgaggttacttc
cttgagagcaggaggtagtacattcacgactttctaggaggaacacagat
gcaattttgacaaagaaaacaggagtgaattattacactaatagtgaccc
aagagtataacacacagacactcaaaaaaagtgggattggcttcatgaca
tacaccttcccttagaaaatggttgtgtcagggaagaaagatagttcttt
ttttttttccattttttattaggtatttagctcatttacatttccaatgt
tataccaaaagtcccccatacccacccacccccactcccctacccgccca
ctccccctttttggccctggcgttcccctgttctggggcatataaagttt
gcgtgtccaatgggcctctctttccagtgatggccgactaggccatcttt
tgatacatatgcagctagagtcaagagctccggggtactggttagttcat
aatgttgatccacctatagggttgcagatcccttttagctccttgagaac
tttctctagctcctccattgggagccctgtgatccatccatagctgactg
ggggctccactcctgtgttttgctaaggcccagcatagcttcacaagaga
cagctacatctggtccttccaacaaaatcttgctagtggtacgcaatggt
g
gaattccccttaaagagatagccccgctggccatctatcccttgcttcag
ggaagatgagcggggatgagagccctgggatgtatgcttgttatagtgtg
tgtgtgttttgtgtttggcacatgtgttaggtgcagagtgtgcggcccgc
attttcgccatggtagcataggcttttgctgcagtggtggcgggacaatc
tcctcagattcggtttgccgctctaaaagaaattatgctgcattatgccg
tggggtgtgaggctaagcactgcacagaggatagcttgctgttggcatcc
tgtggaaggcacgtctgattgcatgaaggttcagtgtcctagttcccttc
ccccaggaaaaacgacacgggagctggccaagacctctctgggtgatgag
cctaagggatggttttgtgtagggcccctatgcttgcacactggggatca
gacctctaccttcacccatgaggcttgcttgcagcaattaagatctggcc
ataggttaattaatatcctggccttttgatgcacctgccgcaagcaaaac
acaatctccccaggagtggcttggcatgatagagaggtagtcagtgataa
gactccctgggcatgtcaccaacctaagacagggatcaaaccaatgctgt
ttgtcacccaaggacgggtaaggggcatggctgcggggggctatctacag
acattctctctgccaaaaaagaaaaaagggggaattgtggggagcgggtg
tggcggcagtcccaaaggtgctagagactgcagctaagtcatatgacttg
cacctgacttcctcatataagacacaaacatcttgagtgctgcgcaggtg
caccaggatacaggtgaatccagtttgatggagatatgcccctgctgccc
tgattagctgaagctgcgtgcctggtgaggcgtgtggcctgctgtgcgtg
gatgggaaactgagagtaaaaaaagagtgagaggccaagggttcgggggg
agaatataaacaaggagaatataaacaagggagattataaccaagagaaa
tagggactgaattaacgtgtgccaagaaggaatcctgatgcagcgttcat
ctttgctgggcggtttgggggcgcgcgccacaagaccaggcagaaatcat
gtgaatgaaaccctcgaaaatgtcccccaaacacccatcatggtcacatt
gtgcgatactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42027135_42028185
seq2: B6Ng01-195A07.b_43_1093 (reverse)

seq1  CACCATTGCATA-CACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGC  49
      ||||||||| || ||||||||||||||| | | ||||| |||||||||||
seq2  CACCATTGCGTACCACTAGCAAGATTTTGTTGGAAGGA-CCAGATGTAGC  49

seq1  TGTCTCTTGTGAGACTATGCCGGGGCCTAGC-AAACACAGAAGTGGATGC  98
      ||||||||||||  |||||| ||| | |||| |||||||| |||||| ||
seq2  TGTCTCTTGTGAAGCTATGCTGGGCCTTAGCAAAACACAGGAGTGGA-GC  98

seq1  CCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGA  148
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTCAGCT-ATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGA  147

seq1  GAAAGTACCCAAGGAGCT-AAAGGGATCTGCAACCCTATAGGTGGATCAA  197
      |||||| | ||||||||| |||||||||||||||||||||||||||||||
seq2  GAAAGTTCTCAAGGAGCTAAAAGGGATCTGCAACCCTATAGGTGGATCAA  197

seq1  CATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGT  247

seq1  ATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGAC  297

seq1  ACACAAACTTTATATGCCCCAGAACAGGGGAACGCCAGGGCCAAAAAGGG  347
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAACTTTATATGCCCCAGAACAGGGGAACGCCAGGGCCAAAAAGGG  347

seq1  GGAGTGGGCGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGCGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGG  397

seq1  TATAACATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAA  447

seq1  AAAAAAAGAACTATCTTTCTTCCCTGACACAACCATTTTCTAAGGGAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAACTATCTTTCTTCCCTGACACAACCATTTTCTAAGGGAAGG  497

seq1  TGTATGTCATGAAGCCAATCCCACTTTTTTTGAGTGTCTGTGTGTTATAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCATGAAGCCAATCCCACTTTTTTTGAGTGTCTGTGTGTTATAC  547

seq1  TCTTGGGTCACTATTAGTGTAATAATTCACTCCTGTTTTCTTTGTCAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTCACTATTAGTGTAATAATTCACTCCTGTTTTCTTTGTCAAAA  597

seq1  TTGCATCTGTGTTCCTCCTAGAAAGTCGTGAATGTACTACCTCCTGCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTGTGTTCCTCCTAGAAAGTCGTGAATGTACTACCTCCTGCTCT  647

seq1  CAAGGAAGTAACCTCAGTTGACCCTAATTTCAAGACTCCTCTGTGCCTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGTAACCTCAGTTGACCCTAATTTCAAGACTCCTCTGTGCCTTG  697

seq1  GAGATTGTTATCTGCCCCTAAGCAAATTCAAGAAACAAAGTAATTAGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGTTATCTGCCCCTAAGCAAATTCAAGAAACAAAGTAATTAGAAT  747

seq1  AGCTTGAACTCAGAGAAGGTTGAGAAGGTTCAGGAGAACAAGAGAAGTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAACTCAGAGAAGGTTGAGAAGGTTCAGGAGAACAAGAGAAGTGA  797

seq1  CCTCAGATCAGAGTACAGAACTTCCTTTACAGTGTGTGTAGAGTTTCTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATCAGAGTACAGAACTTCCTTTACAGTGTGTGTAGAGTTTCTTA  847

seq1  GAATTATAACCTACACAATAAAAGACCATACATACTATGCCCCTAGTAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATAACCTACACAATAAAAGACCATACATACTATGCCCCTAGTAAA  897

seq1  AACTCAGCAACATATGTTAGAAGGTAATATAATTGCATGAAAAGATGGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCAACATATGTTAGAAGGTAATATAATTGCATGAAAAGATGGTA  947

seq1  TAAAAGATTGCAAGAAGAATAAGGTATTAGCATTTGTCATTGTTGAAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATTGCAAGAAGAATAAGGTATTAGCATTTGTCATTGTTGAAAAG  997

seq1  ATTGGTTTATGCTAGGTTGTTGTAATGTTAATTAGAATAGAAACTAAAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTATGCTAGGTTGTTGTAATGTTAATTAGAATAGAAACTAAAGA  1047

seq1  ATTC  1051
      ||||
seq2  ATTC  1051