BAC Information

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BAC

Clone NameB6Ng01-195D10
Chromosome6 (Build37)
Map Location 100,649,710 - 100,762,089
singlet/doubletdoublet
Overlap geneBC049816
Upstream geneProk2, LOC384466, LOC626503, LOC100043703, Rybp, Shq1, LOC625221
Downstream genePpp4r2, EG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195D10.bB6Ng01-195D10.g
ACCGA017695GA017696
length327368
definitionB6Ng01-195D10.b B6Ng01-195D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,649,710 - 100,650,042)(100,761,716 - 100,762,089)
sequence
tactgattcatctttttttttaaaaaaatgtatttaatgtaatactgttt
atttgacttcaaaaacatttcagcattctaaacatacaaaaatgacagaa
tattgcaaattgcgtttaggtacagagagttcttgaacttccattgatgc
aacagttcttcgctttgctgacaacaatgacttctacagtttctttaaaa
agtttcaaatctactgcacttaactaaagaaaaaactccaaatacttctc
aggccagctcttctctctctctctctctctctctctctctctctctctct
ctctctctcacacacacaccccccttt

aaaggcacccaggagtgccttctgtctcctgaatgccaagactaaaggca
cactctactctgtctagcttaatgtcactatttcactattacttcagtag
acagacatgacactgtgcagggtgacacatacaaacgactatacaggaag
gccttatcatccttggccgatcatgggtggcttccgaaaagaagtgacac
tttcactgaggcccaaagagtagtggacatttatgagatgaaagaaagaa
acagggaggtaaaaaagatgctagagagactcaaaggccctgtagatgaa
tggggattagtgaagatgtaggaaaagaaagtcaagaggaggtgtgggca
gggagatgggtggggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_100649710_100650042
seq2: B6Ng01-195D10.b_47_379

seq1  GAATTCTACTGATTCATCTTTTTTTTTAAAAAAATGTATTTAATGTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTGATTCATCTTTTTTTTTAAAAAAATGTATTTAATGTAATA  50

seq1  CTGTTTATTTGACTTCAAAAACATTTCAGCATTCTAAACATACAAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATTTGACTTCAAAAACATTTCAGCATTCTAAACATACAAAAATG  100

seq1  ACAGAATATTGCAAATTGCGTTTAGGTACAGAGAGTTCTTGAACTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATATTGCAAATTGCGTTTAGGTACAGAGAGTTCTTGAACTTCCAT  150

seq1  TGATGCAACAGTTCTTCGCTTTGCTGACAACAATGACTTCTACAGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAACAGTTCTTCGCTTTGCTGACAACAATGACTTCTACAGTTTCT  200

seq1  TTAAAAAGTTTCAAATCTACTGCACTTAACTAAAGAAAAAACTCCAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTTTCAAATCTACTGCACTTAACTAAAGAAAAAACTCCAAATA  250

seq1  CTTCTCAGGCCAGCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGGCCAGCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  300

seq1  CTCTCTCTCTCTCTCTCTCCTCCCTCCCCCTTT  333
      ||||||||||||||| | |   |  ||||||||
seq2  CTCTCTCTCTCTCTCACACACACACCCCCCTTT  333


seq1: chr6_100761716_100762089
seq2: B6Ng01-195D10.g_67_440 (reverse)

seq1  CAACCCCACCCATCTCCCTGCCCACACCTCCTCTTGACTTTCTTTTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCACCCATCTCCCTGCCCACACCTCCTCTTGACTTTCTTTTCCTA  50

seq1  CATCTTCACTAATCCCCATTCATCTACAGGGCCTTTGAGTCTCTCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCACTAATCCCCATTCATCTACAGGGCCTTTGAGTCTCTCTAGCA  100

seq1  TCTTTTTTACCTCCCTGTTTCTTTCTTTCATCTCATAAATGTCCACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTACCTCCCTGTTTCTTTCTTTCATCTCATAAATGTCCACTACT  150

seq1  CTTTGGGCCTCAGTGAAAGTGTCACTTCTTTTCGGAAGCCACCCATGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCCTCAGTGAAAGTGTCACTTCTTTTCGGAAGCCACCCATGATC  200

seq1  GGCCAAGGATGATAAGGCCTTCCTGTATAGTCGTTTGTATGTGTCACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGATGATAAGGCCTTCCTGTATAGTCGTTTGTATGTGTCACCCT  250

seq1  GCACAGTGTCATGTCTGTCTACTGAAGTAATAGTGAAATAGTGACATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGTCATGTCTGTCTACTGAAGTAATAGTGAAATAGTGACATTAA  300

seq1  GCTAGACAGAGTAGAGTGTGCCTTTAGTCTTGGCATTCAGGAGACAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACAGAGTAGAGTGTGCCTTTAGTCTTGGCATTCAGGAGACAGAAG  350

seq1  GCACTCCTGGGTGCCTTTGAATTC  374
      ||||||||||||||||||||||||
seq2  GCACTCCTGGGTGCCTTTGAATTC  374


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