BAC Information

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BAC

Clone NameB6Ng01-195M07
Chromosome6 (Build37)
Map Location 98,361,439 - 98,459,888
singlet/doubletdoublet
Overlap geneLOC665963
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765, LOC666019
Downstream geneLOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195M07.bB6Ng01-195M07.g
ACCGA018094GA018095
length1,124997
definitionB6Ng01-195M07.b B6Ng01-195M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,458,756 - 98,459,888)(98,361,439 - 98,362,430)
sequence
gaattccatctctccagctgagagatcaccccacatcctgacagtgggta
ctttgcatatgaccctaggttgcgtctgacttgagacaaagaaagtggtc
acagttgacaatattttgtcgagaactttcagagactcagtctcaaggtt
aaaaattgctgttatacataataccctggtaattgatagacattttcgct
ctccagagtccattttctgtgaaaaacaccacagaacatctgttcataaa
cagtccttctgtgaaaatactgacacaggtcctggacgtctccaggctca
attcccccgccatgtgcagatggcacgatgtatttgtacagctgaggctt
gggccgcagaagccagccggatctccaggtaagaattcaggcagacacag
tggctgctccagccataccccaacctgctcaaggagctctctcagacaca
aagacaaattgtttcaaaccaacgtgtgggatctgatgaaaaaaaaatca
ccttgggcaatcaacatgtaactctacagagatacagacgttgccagaca
tttcaaagattccacagaacatattaatgaaaacctaattaggttcattc
cgtatttgggaaactaaataagcctgatcagttttgtgtgtgtgcctgtt
ttacttgtgatgctaaactctaattcattattgcaatgagaagcaagttt
gggatgaagggcttaaataattaatgtcccatgttccagtactgtccaaa
tgagggaaaatgtccttataatgtatgaactacttcccagataacttcct
ttcacttgtcttgcacaggaatagaaaacaatgggtggggaggaggcagt
gtttttgaacgcagccttagtagagacacacaagattttcaaatgctgtc
gcttttgtcgcttttcaaactctggatccctgtccttaccggccaatcct
ggggtttcctgccattcgagaaagtcactgtttccagaaagtgatgattc
caaagatagccttgcccctctcacaacctgagaaatgacttgagttaagc
aagactctggcgtttcccagagcataggctccctaaatcactaaattaaa
cagacatgggtgaccatatgcctg

gaattcattaaaagatctggggaattgggatattaattctaaatcattac
atattatagattttctggaaacaagtagggggacatggcaaggagaggag
acaggagagattttatttgactcttagccagaagttggtctcctgagatc
aacccaaagagttctttttaaaaagcataagtttataactcttaaaaaga
tttaagcagatattgtcacagtgtagaaggtgacacaagacaaagttgag
tcatgaacaccagatgccatatatggaagaagaaaaagataatctggata
aaagagtgtgcaaataattttgttctctatgtactataggacataatttt
ctggtaggaattttgtcagtgcctctgtcctacagagcatttgaactgag
actgttaataatagtaaacattactataaatatattgtggcatgtttctt
tttccttttcaatttagagcttcgctgctctctttccagattatttttta
ctcagacaatttggcactagttagttgatgtgtgggtgggtgtattttct
cacctgcacaattaacttgaagttatttttggaatcattttcatttccag
ctattatgatgataccatacttgggaaaaatgctgttgagtttgaattca
gagattctgaatatctaagggcaaaatgtgacaatcaggtcacagggaga
acttcaaaatagcatcaaaactgtgttaggataaagttgtcaagaatgaa
atgcccatggatgtgcttcttcatgcattctgaccctgtttcttgaagtc
tcatcatagctgtcctatggatgaaatattaaatatgtatatcttctttt
tggatgacttaaatgccataaaattggaggagtattgaatggtatctttc
aaatgtaattcagaaatatagatgaagttgaaatggcaaaaatatacttt
atttctgtaatgaattccctactgaaattttgtatatttgggtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98458756_98459888
seq2: B6Ng01-195M07.b_49_1172 (reverse)

seq1  CAGGGATATGTGTCACCCATGGTCTGTTTATTTAGGTGATTTGGGGAGCC  50
      |||| ||||| ||||||||| ||||||||| ||  ||||||| ||||| |
seq2  CAGGCATATG-GTCACCCAT-GTCTGTTTAATTTAGTGATTTAGGGAG-C  47

seq1  CTATGCTCTGGGGAAACGCCAGAGTCCTGCTTTAACTCCAAGTCATTTCT  100
      ||||||||| |||||||||||||||| ||| |||||| ||||||||||| 
seq2  CTATGCTCT-GGGAAACGCCAGAGTCTTGC-TTAACT-CAAGTCATTTC-  93

seq1  TCAGGTTGTGAGAAGGGGCAAGGCCTATCTTTGGAATTCATCCACTTTCT  150
      |||||||||||| |||||||||| |||||||||||| |||| ||||||||
seq2  TCAGGTTGTGAG-AGGGGCAAGG-CTATCTTTGGAA-TCAT-CACTTTCT  139

seq1  GGAAACAGTGACTTTCTCGAATGGCAGGAAA-CCCAGGATTGG-CGGTAA  198
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  GGAAACAGTGACTTTCTCGAATGGCAGGAAACCCCAGGATTGGCCGGTAA  189

seq1  GGACAGGGATCCAGAGTTTGAAAAGCGACAAAAGCGACAGCATTTGAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGATCCAGAGTTTGAAAAGCGACAAAAGCGACAGCATTTGAAAA  239

seq1  TCTTGTGTGTCTCTACTAAGGCTGCGTTCAAAAACACTGCCTCCTCCCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTGTCTCTACTAAGGCTGCGTTCAAAAACACTGCCTCCTCCCCA  289

seq1  CCCATTGTTTTCTATTCCTGTGCAAGACAAGTGAAAGGAAGTTATCTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTTTTCTATTCCTGTGCAAGACAAGTGAAAGGAAGTTATCTGGG  339

seq1  AAGTAGTTCATACATTATAAGGACATTTTCCCTCATTTGGACAGTACTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTCATACATTATAAGGACATTTTCCCTCATTTGGACAGTACTGG  389

seq1  AACATGGGACATTAATTATTTAAGCCCTTCATCCCAAACTTGCTTCTCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGACATTAATTATTTAAGCCCTTCATCCCAAACTTGCTTCTCAT  439

seq1  TGCAATAATGAATTAGAGTTTAGCATCACAAGTAAAACAGGCACACACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAATGAATTAGAGTTTAGCATCACAAGTAAAACAGGCACACACAC  489

seq1  AAAACTGATCAGGCTTATTTAGTTTCCCAAATACGGAATGAACCTAATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGATCAGGCTTATTTAGTTTCCCAAATACGGAATGAACCTAATTA  539

seq1  GGTTTTCATTAATATGTTCTGTGGAATCTTTGAAATGTCTGGCAACGTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCATTAATATGTTCTGTGGAATCTTTGAAATGTCTGGCAACGTCT  589

seq1  GTATCTCTGTAGAGTTACATGTTGATTGCCCAAGGTGATTTTTTTTTCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTGTAGAGTTACATGTTGATTGCCCAAGGTGATTTTTTTTTCAT  639

seq1  CAGATCCCACACGTTGGTTTGAAACAATTTGTCTTTGTGTCTGAGAGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCACACGTTGGTTTGAAACAATTTGTCTTTGTGTCTGAGAGAGC  689

seq1  TCCTTGAGCAGGTTGGGGTATGGCTGGAGCAGCCACTGTGTCTGCCTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGCAGGTTGGGGTATGGCTGGAGCAGCCACTGTGTCTGCCTGAA  739

seq1  TTCTTACCTGGAGATCCGGCTGGCTTCTGCGGCCCAAGCCTCAGCTGTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCTGGAGATCCGGCTGGCTTCTGCGGCCCAAGCCTCAGCTGTAC  789

seq1  AAATACATCGTGCCATCTGCACATGGCGGGGGAATTGAGCCTGGAGACGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATCGTGCCATCTGCACATGGCGGGGGAATTGAGCCTGGAGACGT  839

seq1  CCAGGACCTGTGTCAGTATTTTCACAGAAGGACTGTTTATGAACAGATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACCTGTGTCAGTATTTTCACAGAAGGACTGTTTATGAACAGATGT  889

seq1  TCTGTGGTGTTTTTCACAGAAAATGGACTCTGGAGAGCGAAAATGTCTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTGTTTTTCACAGAAAATGGACTCTGGAGAGCGAAAATGTCTAT  939

seq1  CAATTACCAGGGTATTATGTATAACAGCAATTTTTAACCTTGAGACTGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACCAGGGTATTATGTATAACAGCAATTTTTAACCTTGAGACTGAG  989

seq1  TCTCTGAAAGTTCTCGACAAAATATTGTCAACTGTGACCACTTTCTTTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAAGTTCTCGACAAAATATTGTCAACTGTGACCACTTTCTTTGT  1039

seq1  CTCAAGTCAGACGCAACCTAGGGTCATATGCAAAGTACCCACTGTCAGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCAGACGCAACCTAGGGTCATATGCAAAGTACCCACTGTCAGGA  1089

seq1  TGTGGGGTGATCTCTCAGCTGGAGAGATGGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTGATCTCTCAGCTGGAGAGATGGAATTC  1124


seq1: chr6_98361439_98362430
seq2: B6Ng01-195M07.g_65_1061

seq1  GAATTCATTAAAAGATCTGGGGAATTGGGATATTAATTCTAAATCATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAAGATCTGGGGAATTGGGATATTAATTCTAAATCATTAC  50

seq1  ATATTATAGATTTTCTGGAAACAAGTAGGGGGACATGGCAAGGAGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAGATTTTCTGGAAACAAGTAGGGGGACATGGCAAGGAGAGGAG  100

seq1  ACAGGAGAGATTTTATTTGACTCTTAGCCAGAAGTTGGTCTCCTGAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGATTTTATTTGACTCTTAGCCAGAAGTTGGTCTCCTGAGATC  150

seq1  AACCCAAAGAGTTCTTTTTAAAAAGCATAAGTTTATAACTCTTAAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAGAGTTCTTTTTAAAAAGCATAAGTTTATAACTCTTAAAAAGA  200

seq1  TTTAAGCAGATATTGTCACAGTGTAGAAGGTGACACAAGACAAAGTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCAGATATTGTCACAGTGTAGAAGGTGACACAAGACAAAGTTGAG  250

seq1  TCATGAACACCAGATGCCATATATGGAAGAAGAAAAAGATAATCTGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACACCAGATGCCATATATGGAAGAAGAAAAAGATAATCTGGATA  300

seq1  AAAGAGTGTGCAAATAATTTTGTTCTCTATGTACTATAGGACATAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGTGCAAATAATTTTGTTCTCTATGTACTATAGGACATAATTTT  350

seq1  CTGGTAGGAATTTTGTCAGTGCCTCTGTCCTACAGAGCATTTGAACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGGAATTTTGTCAGTGCCTCTGTCCTACAGAGCATTTGAACTGAG  400

seq1  ACTGTTAATAATAGTAAACATTACTATAAATATATTGTGGCATGTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAATAATAGTAAACATTACTATAAATATATTGTGGCATGTTTCTT  450

seq1  TTTCCTTTTCAATTTAGAGCTTCGCTGCTCTCTTTCCAGATTATTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTCAATTTAGAGCTTCGCTGCTCTCTTTCCAGATTATTTTTTA  500

seq1  CTCAGACAATTTGGCACTAGTTAGTTGATGTGTGGGTGGGTGTATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAATTTGGCACTAGTTAGTTGATGTGTGGGTGGGTGTATTTTCT  550

seq1  CACCTGCACAATTAACTTGAAGTTATTTTTGGAATCATTTTCATTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCACAATTAACTTGAAGTTATTTTTGGAATCATTTTCATTTCCAG  600

seq1  CTATTATGATGATACCATACTTGGGAAAAATGCTGTTGAGTTTGAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGATGATACCATACTTGGGAAAAATGCTGTTGAGTTTGAATTCA  650

seq1  GAGATTCTGAATATCTAAGGGCAAAATGTGACAATCAGGTCACAGGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTGAATATCTAAGGGCAAAATGTGACAATCAGGTCACAGGGAGA  700

seq1  ACTTCAAAATAGCATCAAAACTGTGTTAGGATAAAGTTGTCAAGAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAATAGCATCAAAACTGTGTTAGGATAAAGTTGTCAAGAATGAA  750

seq1  ATGCCCATGGATGTGCTTCTTCATGCATTCTGACCCTGTTTCTTGAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATGGATGTGCTTCTTCATGCATTCTGACCCTGTTTCTTGAAGTC  800

seq1  TCATCATAGCTGTCCTATGGATGAAATATTAAATATGTATATCTTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATAGCTGTCCTATGGATGAAATATTAAATATGTATATCTTCTTTT  850

seq1  TGGATGACTTAAATGCCATAAAAATGGAGGAGTATTGAATGGTATCTTCA  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||  
seq2  TGGATGACTTAAATGCCATAAAATTGGAGGAGTATTGAATGGTATCTTTC  900

seq1  AAATGTTATTCAGAAATATAGATGAAGT--GAATTGTAAAAATATACTTT  948
      |||||| |||||||||||||||||||||   ||| | |||||||||||||
seq2  AAATGTAATTCAGAAATATAGATGAAGTTGAAATGGCAAAAATATACTTT  950

seq1  ATTTCTGTAATGAAAT-CCTACTG-AATTTTGTATATTT-GGTCCTG  992
      |||||||||||||| | ||||||| |||||||||||||| |||||||
seq2  ATTTCTGTAATGAATTCCCTACTGAAATTTTGTATATTTGGGTCCTG  997


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