BAC Information

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BAC

Clone NameB6Ng01-195N18
Chromosome6 (Build37)
Map Location 129,321,556 - 129,474,995
singlet/doubletdoublet
Overlap gene4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik
Upstream geneFoxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a
Downstream geneGabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195N18.bB6Ng01-195N18.g
ACCGA018161GA018162
length5881,099
definitionB6Ng01-195N18.b B6Ng01-195N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,321,556 - 129,322,121)(129,473,905 - 129,474,995)
sequence
gaattctcttcattcctcaccctcatatcacattttcttcatctatttac
atctgagatgattattataatcaaattattggctttattttgttattgag
ttgtttgagttctttgtatactcttggtcatacagatgagtggtttgtgg
gtttccccatcctaaaggctttctcttcattcagtgggccgtttcccctg
acaatcagtcttaaaactcaacagcattccacctgtccatttagcccttc
ttagctgtgcttttggaaatagattcaaagatcctttgccatagacagtg
tcctgagccatttctgctatgttttatttcattaattttagttccttagt
cttgtatttgtttgcttaattcacttgtagttagtttgacctaaggaaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagttcagctttaccatctgcagatagagacctggttttcctatca
ttccgtaaaagagaacaaaatctcttactggaactaaactgtccatatac
ttgcacatttcctccaggttctccatcctgggtgattg
gaattccaagcccagtgtcggctcaaggactacctagggcattggtgaag
gccaggaagcaaagttcaattttgcttaggtatttggcaagtcattgctt
ggtgacacctataacaaaacaatactgaaaggaagcacaaaggattgcca
aggttccaggaggcataatttccttgaaactctttgcctcgtgagtgctt
ccaggcctttcggcctgtcaagcagacttcactggaatgggcgtagcaat
gatgtatcccaagaaattggaacttttcctagaacctcatgataggagag
caaaaggccaaggaagcctagtgcctacctgaagaggaactggtctccag
ttctgaaaacttatcagactaccccataagaaagataggagtccactgat
gatgggtagattcctactgcttagccacatgtacctctggtcctttattt
aaatctaaattcatgttacaacatgaaagatagactttaggtggaaggag
gggaaccttcttatcctattcccagtgtgttcacactgaacaaacctccc
tcccttgcctttcactattacatacttgtttaattggcctatgaaggaca
gatgtagaacctaggctgttatagccttcagagcctaggttctcatctcc
tgatgattccagagacgtgtggagcctggggctgtccaggtcactttatc
ctatggtgtagatagggacactccttcatatacaagcatcatactagact
gagttctgagtgtttgcaggagttataatttttgatcaatgtgaagtgaa
aaaatgaactgtagtcaccctgagacacttcagagtaagcactagtggat
atgggaataaatctgtgttgtgtttgtgcgggctgagaaagaaaagctgc
tgaatctccattgattcaatttagagggggagacactgagaacaaccagc
ttacctctttgtttctgacagatttcaactttggcacagctaagtattgt
tgttaaaaagaggagcccagtgcatctattttaccacacacctcataatt
cttttatcccctcaatgttttttctttattccgagaatcttcgcttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_129321556_129322121
seq2: B6Ng01-195N18.b_51_616

seq1  GAATTCTCTTCATTCCTCACCCTCATATCACATTTTCTTCATCTATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCATTCCTCACCCTCATATCACATTTTCTTCATCTATTTAC  50

seq1  ATCTGAGATGATTATTATAATCAAATTATTGGCTTTATTTTGTTATTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGATGATTATTATAATCAAATTATTGGCTTTATTTTGTTATTGAG  100

seq1  TTGTTTGAGTTCTTTGTATACTCTTGGTCATACAGATGAGTGGTTTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAGTTCTTTGTATACTCTTGGTCATACAGATGAGTGGTTTGTGG  150

seq1  GTTTCCCCATCCTAAAGGCTTTCTCTTCATTCAGTGGGCCGTTTCCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCATCCTAAAGGCTTTCTCTTCATTCAGTGGGCCGTTTCCCCTG  200

seq1  ACAATCAGTCTTAAAACTCAACAGCATTCCACCTGTCCATTTAGCCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGTCTTAAAACTCAACAGCATTCCACCTGTCCATTTAGCCCTTC  250

seq1  TTAGCTGTGCTTTTGGAAATAGATTCAAAGATCCTTTGCCATAGACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTGCTTTTGGAAATAGATTCAAAGATCCTTTGCCATAGACAGTG  300

seq1  TCCTGAGCCATTTCTGCTATGTTTTATTTCATTAATTTTAGTTCCTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCCATTTCTGCTATGTTTTATTTCATTAATTTTAGTTCCTTAGT  350

seq1  CTTGTATTTGTTTGCTTAATTCACTTGTAGTTAGTTTGACCTAAGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTGTTTGCTTAATTCACTTGTAGTTAGTTTGACCTAAGGAAGA  400

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  450

seq1  GAGAGAGTTCAGCTTTACCATCTGCAGATAGAGACCTGGTTTTCCTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTTCAGCTTTACCATCTGCAGATAGAGACCTGGTTTTCCTATCA  500

seq1  TTCCGTAAAAGAGAACAAAATCTCTTACTGGAACTAAACTGTCCATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTAAAAGAGAACAAAATCTCTTACTGGAACTAAACTGTCCATATAC  550

seq1  TTGCACATTTCCTCCA  566
      ||||||||||||||||
seq2  TTGCACATTTCCTCCA  566

seq1: chr6_129473905_129474995
seq2: B6Ng01-195N18.g_66_1164 (reverse)

seq1  GAGAAGCCGAAGA-TCTCGG-ATAAA-AAAAAACAATGAGGGGATAAA--  45
      |||||| |||||| |||||| ||||| |||||||| ||||||||||||  
seq2  GAGAAG-CGAAGATTCTCGGAATAAAGAAAAAACATTGAGGGGATAAAAG  49

seq1  GATTATGGGGTGTGT-GTAAAAT-GATGGCAACTGGCT-CTCTTTTTAAA  92
       |||||| ||||||| ||||||| ||| |||   |||| |||||||| ||
seq2  AATTATGAGGTGTGTGGTAAAATAGAT-GCACTGGGCTCCTCTTTTT-AA  97

seq1  CAAC-ATACTTAGCTGTGCCCAAGTTGAAATCTGTCAGAAAACAAAGAGG  141
      |||| ||||||||||||||| ||||||||||||||||| |||||||||||
seq2  CAACAATACTTAGCTGTGCCAAAGTTGAAATCTGTCAG-AAACAAAGAGG  146

seq1  TTAGCTGTTTGTTCTCAGTGTCT-CCCCTCTAATTTGAATCAATGGAGAT  190
      | ||||| ||||||||||||||| ||||||||| ||||||||||||||||
seq2  TAAGCTGGTTGTTCTCAGTGTCTCCCCCTCTAAATTGAATCAATGGAGAT  196

seq1  TCAGCAGCTTTTCTTTCTCAGCCCGCACAAACACAACACAGATTTATT-C  239
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAGCAGCTTTTCTTTCTCAGCCCGCACAAACACAACACAGATTTATTCC  246

seq1  CATATCCACTAGTGCTTACTCTGAAGTGTCTCAGGGTGACTACAGTTCAT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCACTAGTGCTTACTCTGAAGTGTCTCAGGGTGACTACAGTTCAT  296

seq1  TTTTTCACTTCACATTGATC-AAAATTATAACTCCTGCAAACACTCAGAA  338
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTTCACTTCACATTGATCAAAAATTATAACTCCTGCAAACACTCAGAA  346

seq1  CTCAGTCTAGTATGATGCTTGTATATGAAGGAGTGTCCCTATCTACACCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTAGTATGATGCTTGTATATGAAGGAGTGTCCCTATCTACACCA  396

seq1  TAGGATAAAGTGACCTGGACAGCCCCAGGCTCCACACGTCTCTGGAATCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAAAGTGACCTGGACAGCCCCAGGCTCCACACGTCTCTGGAATCA  446

seq1  TCAGGAGATGAGAACCTAGGCTCTGAAGGCTATAACAGCCTAGGTTCTAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGATGAGAACCTAGGCTCTGAAGGCTATAACAGCCTAGGTTCTAC  496

seq1  ATCTGTCCTTCATAGGCCAATTAAACAAGTATGTAATAGTGAAAGGCAAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCTTCATAGGCCAATTAAACAAGTATGTAATAGTGAAAGGCAAG  546

seq1  GGAGGGAGGTTTGTTCAGTGTGAACACACTGGGAATAGGATAAGAAGGTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGTTTGTTCAGTGTGAACACACTGGGAATAGGATAAGAAGGTT  596

seq1  CCCCTCCTTCCACCTAAAGTCTATCTTTCATGTTGTAACATGAATTTAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTCCACCTAAAGTCTATCTTTCATGTTGTAACATGAATTTAGA  646

seq1  TTTAAATAAAGGACCAGAGGTACATGTGGCTAAGCAGTAGGAATCTACCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAAGGACCAGAGGTACATGTGGCTAAGCAGTAGGAATCTACCC  696

seq1  ATCATCAGTGGACTCCTATCTTTCTTATGGGGTAGTCTGATAAGTTTTCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGTGGACTCCTATCTTTCTTATGGGGTAGTCTGATAAGTTTTCA  746

seq1  GAACTGGAGACCAGTTCCTCTTCAGGTAGGCACTAGGCTTCCTTGGCCTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGACCAGTTCCTCTTCAGGTAGGCACTAGGCTTCCTTGGCCTT  796

seq1  TTGCTCTCCTATCATGAGGTTCTAGGAAAAGTTCCAATTTCTTGGGATAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCCTATCATGAGGTTCTAGGAAAAGTTCCAATTTCTTGGGATAC  846

seq1  ATCATTGCTACGCCCATTCCAGTGAAGTCTGCTTGACAGGCCGAAAGGCC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGCTACGCCCATTCCAGTGAAGTCTGCTTGACAGGCCGAAAGGCC  896

seq1  TGGAAGCACTCACGAGGCAAAGAGTTTCAAGGAAATTATGCCTCCTGGAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCACTCACGAGGCAAAGAGTTTCAAGGAAATTATGCCTCCTGGAA  946

seq1  CCTTGGCAATCCTTTGTGCTTCCTTTCAGTATTGTTTTGTTATAGGTGTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAATCCTTTGTGCTTCCTTTCAGTATTGTTTTGTTATAGGTGTC  996

seq1  ACCAAGCAATGACTTGCCAAATACCTAAGCAAAATTGAACTTTGCTTCCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCAATGACTTGCCAAATACCTAAGCAAAATTGAACTTTGCTTCCT  1046

seq1  GGCCTTCACCAATGCCCTAGGTAGTCCTTGAGCCGACACTGGGCTTGGAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCACCAATGCCCTAGGTAGTCCTTGAGCCGACACTGGGCTTGGAA  1096

seq1  TTC  1091
      |||
seq2  TTC  1099