BAC Information

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BAC

Clone NameB6Ng01-195O13
Chromosome6 (Build37)
Map Location 104,601,592 - 104,705,911
singlet/doubletdoublet
Overlap geneCntn6
Upstream geneChl1, LOC100043345
Downstream geneLOC384470, LOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195O13.bB6Ng01-195O13.g
ACCGA018199GA018200
length1,1241,076
definitionB6Ng01-195O13.b B6Ng01-195O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,704,795 - 104,705,911)(104,601,592 - 104,602,668)
sequence
gaattcattgacgttttgcaataactataaaaataaggctcatgaggcgt
tttgctttgttttaagtcagagttaaccaaactctttcttcttttcttca
ggtggtttacactgacatctcagtttagagttgaaaaccttctctaacaa
ataactatattataatatattataggcatccctttcccagtgtgtttttg
ttctagaacagaaataaaagtgactatcctcagacttcctggctttgggc
cttagtctagtctctggttaaagtttttccttcttgttttcattggacga
ttgttgtatatgtcatatggatctgcaatgatactgtcttattagtcaat
tattggttgctatgataaatatccaagaaaattagtttacaggtggaaag
gtttcttttcttttctttttttttttttttcttctgagtttcttgctgta
ttttatgagtttaaggtgaggcagaacattgtgccagtaagactatgtgg
cagaggttcctcaccttagagcctatctgaaataaggaagtataaaaggt
ccaagacaaagatagcacacattcagaaacaaatttcctacaaccaggtc
cattcacttgcaattgtatcattctcccaaaactatatgacctatggagg
aattttacaatccagcaacatggcagctttggctggaatacaatcaagcc
cttagtacacacctttagtctcagaaggcagaggtcagaagatctctgag
ttcaaggacagtctggaatagaacaagtttccagtaaaaaaaaaaggtta
agtcttgttgtggtggtacatgcctttaatccaagcacttaagagagaga
ggaatgcagatcaatgagttcagtcagtcaattgagttcatttgagtttg
aaggagatcagttcagtgaattgagtagtttattgggacttgagtttgta
acagttcagtgaaaggtccacagaggcagttgaagccaaagaattaagaa
tgagacagtagtgaatagaatttaatttgaggctgagtgaaacattcatt
cagaaggctgatataatccagtttgagttcagtcagtttggagaaagagt
tgagcaagagcagtgtatttaagt
gaattcagtgtttgggaaatagccctgcttttggatgcatataaatcaat
tgtcattgcagttgatttctgcattggagaatcacttgaaaaatatatca
gtgagaaaagtatagacacatcctataggaatgtgcagttattaaggaga
ctaacaatccctcttggaatcagactatacactgacaaattcaaaaggga
atgctatacagaacatagtatttaattgtaatgcatctgagtttctattg
cattttctatcaaatatctggcctttgcataatggcataggcttacaatg
tcactacttgggtgctgcgactatctcaaaaaaaaaaaaaaaaaaaaaag
aaagaaaaaagacaaacacacaaactaagtaaatcccaaatgtctacatc
aacatatattttatatagcgacatatttcttcttcttaatagcttgcact
ctataaagtgcttctaaatatctctatggttttgaatgaccttttttttt
taaatttggctaaaagaaatacttgcatctaaaactttttcaagctaaac
tctaatttaatgttgccaaaaaaggaaaagtataggttaaattaaaaaga
agttaattttttttttacctgcatgagagggaggttataggtcttcatta
tttatttcccttctggggtcaaaaaatcatgcctcctgtgcttgtcacac
aaggttgcggatttgacttcaagctcctacacccatataaaaaagcagag
tgccatcacaatgctacaatctctgcactggggtgtggaaataagacaat
ttttaaggcttattagccaggtcatctagtccatttggtcagctccatcc
atattcagtaataatatgaaacataatttgggaaataattgaagaggaaa
cttgaagtcacccctccagccttcataaacatgtgtacacacctgagcac
catatgaacaaacataatagttcataacaatccatgcaataaaatagtct
gctatacaagtaactgatctttctgctaaaacacagtgacaataggtact
aaaactgactttggaaagcaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_104704795_104705911
seq2: B6Ng01-195O13.b_46_1169 (reverse)

seq1  ACTTAATTACACTGCTCTTGCTCAAACTC-TTCTCCAAACTGACTG-ACT  48
      |||||| |||||||||||||||| ||||| |||||||||||||||| |||
seq2  ACTTAAATACACTGCTCTTGCTC-AACTCTTTCTCCAAACTGACTGAACT  49

seq1  CAAACTGGATTATATCAG-CTTCTGAATGAATTGTTCACCTCAGCCTCAA  97
      |||||||||||||||||| |||||||||||||  |||| |||||||||||
seq2  CAAACTGGATTATATCAGCCTTCTGAATGAATGTTTCA-CTCAGCCTCAA  98

seq1  ATT-AATTCTA-TCACTTCTGTCTCCTTCTT-ATTCTTTGGCTTCAACTG  144
      ||| ||||||| ||||| ||||||| ||||| ||||||||||||||||||
seq2  ATTAAATTCTATTCACTACTGTCTCATTCTTAATTCTTTGGCTTCAACTG  148

seq1  CCTCTGTGGACC-TTCACTGAACTG-TACAAACTCAAGT-CCAATAAACT  191
      |||||||||||| |||||||||||| ||||||||||||| ||||||||||
seq2  CCTCTGTGGACCTTTCACTGAACTGTTACAAACTCAAGTCCCAATAAACT  198

seq1  ACTCAATTCACTGAACTGATCTCCTTCAAACTCAAATGAACTCAATTGAC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTCACTGAACTGATCTCCTTCAAACTCAAATGAACTCAATTGAC  248

seq1  TGACTGAACTCATTGATCTGCATTCCTCTCTCTCTTAAGTGCTTGGATTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAACTCATTGATCTGCATTCCTCTCTCTCTTAAGTGCTTGGATTA  298

seq1  AAGGCATGTACCACCACAACAAGACTTAACCTTTTTTTTTTACTGGAAAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGTACCACCACAACAAGACTTAACCTTTTTTTTTTACTGGAAAC  348

seq1  TTGTTCTATTCCAGACTGTCCTTGAACTCAGAGATCTTCTGACCTCTGCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTATTCCAGACTGTCCTTGAACTCAGAGATCTTCTGACCTCTGCC  398

seq1  TTCTGAGACTAAAGGTGTGTACTAAGGGCTTGATTGTATTCCAGCCAAAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGACTAAAGGTGTGTACTAAGGGCTTGATTGTATTCCAGCCAAAG  448

seq1  CTGCCATGTTGCTGGATTGTAAAATTCCTCCATAGGTCATATAGTTTTGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGTTGCTGGATTGTAAAATTCCTCCATAGGTCATATAGTTTTGG  498

seq1  GAGAATGATACAATTGCAAGTGAATGGACCTGGTTGTAGGAAATTTGTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGATACAATTGCAAGTGAATGGACCTGGTTGTAGGAAATTTGTTT  548

seq1  CTGAATGTGTGCTATCTTTGTCTTGGACCTTTTATACTTCCTTATTTCAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTGTGCTATCTTTGTCTTGGACCTTTTATACTTCCTTATTTCAG  598

seq1  ATAGGCTCTAAGGTGAGGAACCTCTGCCACATAGTCTTACTGGCACAATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTCTAAGGTGAGGAACCTCTGCCACATAGTCTTACTGGCACAATG  648

seq1  TTCTGCCTCACCTTAAACTCATAAAATACAGCAAGAAACTCAGAAGAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCACCTTAAACTCATAAAATACAGCAAGAAACTCAGAAGAAAA  698

seq1  AAAAAAAAAAAGAAAAGAAAAGAAACCTTTCCACCTGTAAACTAATTTTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGAAAAGAAAAGAAACCTTTCCACCTGTAAACTAATTTTC  748

seq1  TTGGATATTTATCATAGCAACCAATAATTGACTAATAAGACAGTATCATT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATTTATCATAGCAACCAATAATTGACTAATAAGACAGTATCATT  798

seq1  GCAGATCCATATGACATATACAACAATCGTCCAATGAAAACAAGAAGGAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCATATGACATATACAACAATCGTCCAATGAAAACAAGAAGGAA  848

seq1  AAACTTTAACCAGAGACTAGACTAAGGCCCAAAGCCAGGAAGTCTGAGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAACCAGAGACTAGACTAAGGCCCAAAGCCAGGAAGTCTGAGGA  898

seq1  TAGTCACTTTTATTTCTGTTCTAGAACAAAAACACACTGGGAAAGGGATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACTTTTATTTCTGTTCTAGAACAAAAACACACTGGGAAAGGGATG  948

seq1  CCTATAATATATTATAATATAGTTATTTGTTAGAGAAGGTTTTCAACTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAATATATTATAATATAGTTATTTGTTAGAGAAGGTTTTCAACTCT  998

seq1  AAACTGAGATGTCAGTGTAAACCACCTGAAGAAAAGAAGAAAGAGTTTGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGATGTCAGTGTAAACCACCTGAAGAAAAGAAGAAAGAGTTTGG  1048

seq1  TTAACTCTGACTTAAAACAAAGCAAAACGCCTCATGAGCCTTATTTTTAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTGACTTAAAACAAAGCAAAACGCCTCATGAGCCTTATTTTTAT  1098

seq1  AGTTATTGCAAAACGTCAATGAATTC  1117
      ||||||||||||||||||||||||||
seq2  AGTTATTGCAAAACGTCAATGAATTC  1124

seq1: chr6_104601592_104602668
seq2: B6Ng01-195O13.g_66_1141

seq1  GAATTCAGTGTTTGGGAAATAGCCCTGCTTTTGGATGCATATAAATCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTTGGGAAATAGCCCTGCTTTTGGATGCATATAAATCAAT  50

seq1  TGTCATTGCAGTTGATTTCTGCATTGGAGAATCACTTGAAAAATATATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGCAGTTGATTTCTGCATTGGAGAATCACTTGAAAAATATATCA  100

seq1  GTGAGAAAAGTATAGACACATCCTATAGGAATGTGCAGTTATTAAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAAGTATAGACACATCCTATAGGAATGTGCAGTTATTAAGGAGA  150

seq1  CTAACAATCCCTCTTGGAATCAGACTATACACTGACAAATTCAAAAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATCCCTCTTGGAATCAGACTATACACTGACAAATTCAAAAGGGA  200

seq1  ATGCTATACAGAACATAGTATTTAATTGTAATGCATCTGAGTTTCTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATACAGAACATAGTATTTAATTGTAATGCATCTGAGTTTCTATTG  250

seq1  CATTTTCTATCAAATATCTGGCCTTTGCATAATGGCATAGGCTTACAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTATCAAATATCTGGCCTTTGCATAATGGCATAGGCTTACAATG  300

seq1  TCACTACTTGGGTGCTGCGACTATCTCAAAAAAAAAAAAAAAAAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACTTGGGTGCTGCGACTATCTCAAAAAAAAAAAAAAAAAAAAAAG  350

seq1  AAAGAAAAAAGACAAACACACAAACTAAGTAAATCCCAAATGTCTACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAGACAAACACACAAACTAAGTAAATCCCAAATGTCTACATC  400

seq1  AACATATATTTTATATAGCGACATATTTCTTCTTCTTAATAGCTTGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATATTTTATATAGCGACATATTTCTTCTTCTTAATAGCTTGCACT  450

seq1  CTATAAAGTGCTTCTAAATATCTCTATGGTTTTGAATGACCTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGTGCTTCTAAATATCTCTATGGTTTTGAATGACCTTTTTTTTT  500

seq1  TAAATTTGGCTAAAAGAAATACTTGCATCTAAAACTTTTTCAAGCTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGGCTAAAAGAAATACTTGCATCTAAAACTTTTTCAAGCTAAAC  550

seq1  TCTAATTTAATGTTGCCAAAAAAGGAAAAGTATAGGTTAAATTAAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTAATGTTGCCAAAAAAGGAAAAGTATAGGTTAAATTAAAAAGA  600

seq1  AGTTAATTTTTTTTTTACCTGCATGAGAGGGAGGTTATAGGTCTTCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTTTTTTTTTACCTGCATGAGAGGGAGGTTATAGGTCTTCATTA  650

seq1  TTTATTTCCCTTCTGGGGTCAAAAAATCATGCCTCCTGTGCTTGTCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCCTTCTGGGGTCAAAAAATCATGCCTCCTGTGCTTGTCACAC  700

seq1  AAGGTTGCGGATTTGACTTCAAGCTCCTACACCCATATAAAAAAGCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCGGATTTGACTTCAAGCTCCTACACCCATATAAAAAAGCAGAG  750

seq1  TGCCATCACAATGCTACAATCTCTGCACTGGGGTGTGGAAATAAGACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCACAATGCTACAATCTCTGCACTGGGGTGTGGAAATAAGACAAT  800

seq1  TTTTAAGGCTTATTAGCCAGGTCATCTAGTCCATTTGGTCAGCTCCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGCTTATTAGCCAGGTCATCTAGTCCATTTGGTCAGCTCCATCC  850

seq1  ATATTCAGTAATAATATGAAACATAATTTGGGAAATAATTGAAGAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGTAATAATATGAAACATAATTTGGGAAATAATTGAAGAGGAAA  900

seq1  CTTGAAGTCA-CCCTCCAGCCTTCATAAACATGTGTACACACCTGAGCAC  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTCACCCCTCCAGCCTTCATAAACATGTGTACACACCTGAGCAC  950

seq1  CATATGAACAAACAT-ATAGTTTCAT-ACAATCCATGC-ATAAAATAGGT  996
      ||||||||||||||| |||| ||||| ||||||||||| |||||||| ||
seq2  CATATGAACAAACATAATAG-TTCATAACAATCCATGCAATAAAATA-GT  998

seq1  CTGCCTATACAAGTAACTGATCTTTCTGCTAAAACACAAGTGACCATAGG  1046
      ||| ||||||||||||||||||||||||||||||||| |||||| |||||
seq2  CTG-CTATACAAGTAACTGATCTTTCTGCTAAAACAC-AGTGACAATAGG  1046

seq1  TACTAAAACTGACATTTTGAAAAGC-AAGAAA  1077
      |||||||||||||  |||| ||||| ||||||
seq2  TACTAAAACTGAC--TTTGGAAAGCAAAGAAA  1076