BAC Information

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BAC

Clone NameB6Ng01-196M05
Chromosome6 (Build37)
Map Location 37,069,108 - 37,254,339
singlet/doubletdoublet
Overlap geneDgki
Upstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, EG665024
Downstream geneCreb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196M05.bB6Ng01-196M05.g
ACCGA018815GA018816
length6351,181
definitionB6Ng01-196M05.b B6Ng01-196M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,069,108 - 37,069,742)(37,253,151 - 37,254,339)
sequence
gaattctctagccttcatccaccagacacacaaaggtcaatgtcacttcc
cttcctgggaggttccacttccttttaccacacatacccactgccaaagg
taatctttctgtaatccacggctgcttctggctctgcaccctgagtcatc
ttggttcattagaccctcagtatcctgatagcagccctggtggtctctgc
ttgactcagcttcagactggtacccaaacaattctgaaagctggctttgc
ctcccagacactcctgccatacaaacacatgactcggtctaacagcctgc
acccactgcagcagagctgcctgccatctgtgtgtggatcatcagtctgc
catgctggacaccccaatctttgtgtgtagatcccagatcagatcacatg
cagattaggcttgctttgctcctggtatagtgtgggtgcctcgggggcag
ggggggaacacctgctagacctgaatatatagctagaaggacagtcccca
gaagcacatgctaggccatgagtctaccattcttcctactggtaacatac
acgaatacaaacagatccggagcattcttcctcttgagatgaaataggca
gggctgggttcatggtcactgtctctgcgcgtgtg
gaattcaggcatcattttgtggaacattacccatacagttccagaaaaat
ctctcttccttcccccctttcctcctttcttcccttctctaccctccttc
ctccctcttccccttctgtactccttccttcccctcttctccctctcccc
tccccctccctcttcccttcctcctccgcaattcctccttcctcatcctt
gcctgtcttaggtatttaggtatagtaacttccctcctttctcactcctt
ccttctgtctctctcacatacacattttttaaagctctattaatcttttt
tttatctataaataaccaagaacttcaatatatacatgcttgtgcaactg
ctttttacaaaacatgatcccgaattattatgtggaaattcttgtttact
tatttcaagaataatagattcattttcatctgccctgcagttttataggc
tgttaaatttctagtcccagcaccttcccaaatgacctaaaacaaaatat
acatttaacattttcttctccttctaccaccaccaccactaccaccacca
cctccttctcttctccttctcctttttcctcttcctcttcttcatcatcc
tcccctcctcctcctcctcctctttttcctcatcctcttcttctcgtcct
cctcctctttctctttttccttctcctccttctttaaaatccatgcctgg
aaacccacccctttcactcccccttttaaagaaagcttgggaccagtgag
aggagataatggatccccccctgtggtacacatttaacattttcttcttc
ttccaccaccaccaccacctcctcctcctcctgcatgcacatgcagactg
gataaagaggtaagtaaacaaataaatgtgaaatgatgtaaagcaatctt
taaagttggaagatgatcttgataagagctggattgtttagctgctgcaa
ccgaaggacaagaataaaaggagattagtttatggagcttctgccagggg
ggtggggtccaaagatagatttcaatccatcctggggccacagaaaccat
gtccatgccaccagctattgctccacgtttctatatgactacattcactc
agaatatgcatgcatatcaaacgaagtgccctttctatgactgaatgcct
tgtcgttaggatcccactctctcagtgaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37069108_37069742
seq2: B6Ng01-196M05.b_44_678

seq1  GAATTCTCTAGCCTTCATCCACCAGACACACAAAGGTCAATGTCACTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGCCTTCATCCACCAGACACACAAAGGTCAATGTCACTTCC  50

seq1  CTTCCTGGGAGGTTCCACTTCCTTTTACCACACATACCCACTGCCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGGAGGTTCCACTTCCTTTTACCACACATACCCACTGCCAAAGG  100

seq1  TAATCTTTCTGTAATCCACGGCTGCTTCTGGCTCTGCACCCTGAGTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTCTGTAATCCACGGCTGCTTCTGGCTCTGCACCCTGAGTCATC  150

seq1  TTGGTTCATTAGACCCTCAGTATCCTGATAGCAGCCCTGGTGGTCTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCATTAGACCCTCAGTATCCTGATAGCAGCCCTGGTGGTCTCTGC  200

seq1  TTGACTCAGCTTCAGACTGGTACCCAAACAATTCTGAAAGCTGGCTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCAGCTTCAGACTGGTACCCAAACAATTCTGAAAGCTGGCTTTGC  250

seq1  CTCCCAGACACTCCTGCCATACAAACACATGACTCGGTCTAACAGCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGACACTCCTGCCATACAAACACATGACTCGGTCTAACAGCCTGC  300

seq1  ACCCACTGCAGCAGAGCTGCCTGCCATCTGTGTGTGGATCATCAGTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGCAGCAGAGCTGCCTGCCATCTGTGTGTGGATCATCAGTCTGC  350

seq1  CATGCTGGACACCCCAATCTTTGTGTGTAGATCCCAGATCAGATCACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGACACCCCAATCTTTGTGTGTAGATCCCAGATCAGATCACATG  400

seq1  CAGATTAGGCTTGCTTTGCTCCTGGTATAGTGTGGGTGCCTCGGGGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAGGCTTGCTTTGCTCCTGGTATAGTGTGGGTGCCTCGGGGGCAG  450

seq1  GGGGGGAACACCTGCTAGACCTGAATATATAGCTAGAAGGACAGTCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAACACCTGCTAGACCTGAATATATAGCTAGAAGGACAGTCCCCA  500

seq1  GAAGCACATGGTAGGCCATGAGTCTACCATTCTTCCTACTGGTAACATAC  550
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACATGCTAGGCCATGAGTCTACCATTCTTCCTACTGGTAACATAC  550

seq1  AGGAATAGAAACAGATCAGGAGCATTCTTCTTCTTGAGATGAAATAGGCA  600
      | ||||| ||||||||| |||||||||||| |||||||||||||||||||
seq2  ACGAATACAAACAGATCCGGAGCATTCTTCCTCTTGAGATGAAATAGGCA  600

seq1  GGGCTGGGTTCATGGTCACTGTCTCTGCGTGTGTG  635
      ||||||||||||||||||||||||||||| |||||
seq2  GGGCTGGGTTCATGGTCACTGTCTCTGCGCGTGTG  635

seq1: chr6_37253151_37254339
seq2: B6Ng01-196M05.g_67_1247 (reverse)

seq1  TATTCACTGAGAG-GTGGGATTCCTCAACACGGCACAGAGGCATTCCAGT  49
      ||||||||||||| |||||| ||||    ||| ||   ||||||| ||||
seq2  TATTCACTGAGAGAGTGGGA-TCCT---AACGACA---AGGCATT-CAGT  42

seq1  CATAGGAAGGGGCACTCTGTTTGA-AAGCATGCATTATTCTGAGTG-ATG  97
      |||| ||| |||||||  |||||| | ||||||| ||||||||||| |||
seq2  CATA-GAAAGGGCACTTCGTTTGATATGCATGCA-TATTCTGAGTGAATG  90

seq1  TAAGTTCATATAG-AACGT-GAGC-ATTGCTGGGTGCATGGGAACATTGG  144
      ||   |||||||| ||||| |||| || |||||  ||||||  ||| |||
seq2  TA--GTCATATAGAAACGTGGAGCAATAGCTGGTGGCATGG--ACA-TGG  135

seq1  TTTCTGT-GCCCCA-GATGGATTGAAATCTTATCTTTGGACCCCACCCCC  192
      ||||||| |||||| |||||||||||||| ||||||||||||||||||||
seq2  TTTCTGTGGCCCCAGGATGGATTGAAATC-TATCTTTGGACCCCACCCCC  184

seq1  CTGGCAGAAGCTCCAT-AACTTATCTTCCTTTTATTCTTTGTCCTTCGGT  241
      |||||||||||||||| |||| ||| ||||||||||| ||||||||||||
seq2  CTGGCAGAAGCTCCATAAACTAATC-TCCTTTTATTC-TTGTCCTTCGGT  232

seq1  TGCAGCAGCTAA--CATCCAGCTCTTATCAAGATTCATCTTCCAACTTTA  289
      ||||||||||||   |||||||||||||||||| ||||||||||||||||
seq2  TGCAGCAGCTAAACAATCCAGCTCTTATCAAGA-TCATCTTCCAACTTTA  281

seq1  AAGATTGCTTTTACATCATTTCACATTTATTTGTTTACTTACCTCTTTAT  339
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGC-TTTACATCATTTCACATTTATTTGTTTACTTACCTCTTTAT  330

seq1  CCAGTCTGCATGTGCATGCAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGCATGTGCATGCAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGA  380

seq1  AGAAGAAGAAAATGTTAAATGTGTACCACAGGGGGGGATCCATTATCTCC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAAATGTTAAATGTGTACCACAGGGGGGGATCCATTATCTCC  430

seq1  TCTCACTGGTCCCAAGCTTTCTTTAAAAGGGGGAGTG-AAGGGGTGGGTT  488
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTCACTGGTCCCAAGCTTTCTTTAAAAGGGGGAGTGAAAGGGGTGGGTT  480

seq1  TCCAGGCATGGATTTTAAAGAAGGAGGAGAAGGAAAAAGAGAAAGAGGAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCATGGATTTTAAAGAAGGAGGAGAAGGAAAAAGAGAAAGAGGAG  530

seq1  GAGGACGAGAAGAAGAGGATGAGGAAAAAGAGGAGGAGGAGGAGGAGGGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGAGAAGAAGAGGATGAGGAAAAAGAGGAGGAGGAGGAGGAGGGG  580

seq1  AGGATGATGAAGAAGAGGAAGAGGAAAAAGGAGAAGGAGAAGAGAAGGAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATGAAGAAGAGGAAGAGGAAAAAGGAGAAGGAGAAGAGAAGGAG  630

seq1  GTGGTGGTGGTAGTGGTGGTGGTGGTAGAAGGAGAAGAAAATGTTAAATG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGGTAGTGGTGGTGGTGGTAGAAGGAGAAGAAAATGTTAAATG  680

seq1  TATATTTTGTTTTAGGTCATTTGGGAAGGTGCTGGGACTAGAAATTTAAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGTTTTAGGTCATTTGGGAAGGTGCTGGGACTAGAAATTTAAC  730

seq1  AGCCTATAAAACTGCAGGGCAGATGAAAATGAATCTATTATTCTTGAAAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATAAAACTGCAGGGCAGATGAAAATGAATCTATTATTCTTGAAAT  780

seq1  AAGTAAACAAGAATTTCCACATAATAATTCGGGATCATGTTTTGTAAAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACAAGAATTTCCACATAATAATTCGGGATCATGTTTTGTAAAAA  830

seq1  GCAGTTGCACAAGCATGTATATATTGAAGTTCTTGGTTATTTATAGATAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCACAAGCATGTATATATTGAAGTTCTTGGTTATTTATAGATAA  880

seq1  AAAAAAGATTAATAGAGCTTTAAAAAATGTGTATGTGAGAGAGACAGAAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGATTAATAGAGCTTTAAAAAATGTGTATGTGAGAGAGACAGAAG  930

seq1  GAAGGAGTGAGAAAGGAGGGAAGTTACTATACCTAAATACCTAAGACAGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTGAGAAAGGAGGGAAGTTACTATACCTAAATACCTAAGACAGG  980

seq1  CAAGGATGAGGAAGGAGGAATTGCGGAGGAGGAAGGGAAGAGGGAGGGGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGAGGAAGGAGGAATTGCGGAGGAGGAAGGGAAGAGGGAGGGGG  1030

seq1  AGGGGAGAGGGAGAAGAGGGGAAGGAAGGAGTACAGAAGGGGAAGAGGGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAGGGAGAAGAGGGGAAGGAAGGAGTACAGAAGGGGAAGAGGGA  1080

seq1  GGAAGGAGGGTAGAGAAGGGAAGAAAGGAGGAAAGGGGGGAAGGAAGAGA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGGTAGAGAAGGGAAGAAAGGAGGAAAGGGGGGAAGGAAGAGA  1130

seq1  GATTTTTCTGGAACTGTATGGGTAATGTTCCACAAAATGATGCCTGAATT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCTGGAACTGTATGGGTAATGTTCCACAAAATGATGCCTGAATT  1180

seq1  C  1189
      |
seq2  C  1181