BAC Information

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BAC

Clone NameB6Ng01-196M08
Chromosome6 (Build37)
Map Location 40,832,905 - 40,834,004
singlet/doubletsinglet
Overlap geneMoxd2
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904
Downstream geneLOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196M08.bB6Ng01-196M08.g
ACCGA018821GA018822
length1,0731,131
definitionB6Ng01-196M08.b B6Ng01-196M08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaatgatttttcttctcccacaacccatcagtaaccaatactt
tagcaaggaaaggcccatttttaatccccaactgagagttgataggacca
gtcttgggttggcttactgcaggcagccatagctactatgaagtcatgac
tgcattgactgtgtcataccataccaagaagacaacatttccaacccttc
tctctgcctcctgaccattatattttgttttctgtcttcccatatggatg
ttctcatttactctattcccactgaaccattctgtctcacttttcaccca
agttctttgcccttaaaggcctgacatatttctctctggcagaatgtgtg
cttgccacttttctgagcaacaggctttagtcatcttttttcacatctgt
ggctcaggctgtgaattttggaattagaccagaactctgatggaaaacaa
gaaacttcagagaatttatgtgtctcagcttcacctcttcaaacttgtct
gttttgcatagtccataggacaagaaagcctctgcacccgggggtataaa
gtgaatagggaaaactgagatgcccagctggaggactcccatgtcatatt
tgcgaaggtgcgaggtgtagaacagccgcatccctgaggtatcacggata
cctagagtacaaagaaaatattctcctcagacggtgggagtgggtcacaa
tgttcaggaaagttgaaatgggctgtgattaacagcatccagcatgtatg
ccatagatcttccatatccagcagaccagttgcctctaccagctgccctc
tcacatgtcctttggatactcaccaggaaggttctgaaaattgctgtagt
gatttccagtctgatccactgagggtcaaagggggttccatagagatgcc
cacatcatctggaaactgtaactctgtgaagatgaaacatggcagtgatg
tggagaatggtagagacaactctggctctgcctgcttctacttcctttag
acttctatgccccagttcttctatagcatgctacagcaatgtacctggtc
ccaaatgccttcatcctgactca
gaattctcacctgagaaataccgaatgactgagaagtacctgaaaaaatg
ttcaacatctttatcatcagggaaatgcaaatcaaaacaaccctgagatt
ccacctcacaccagtcagaatggctaagatcaaaacttcaggtgcagcag
atgctgtcgaagatgtggagaaagaggaacactcctccattgttggtggg
attgcaagcttgtacaaccactctggaaatcagtctgttggtttctcaga
aaattggacatagtactaccggaggatctcacaatacctctcctgggcat
atatccagaagaggtcccaaccggtaataaggacacatgctccgctatgt
tcatagcagccttatttataatagccagaagctggaaagaacccagatgc
ccctcaaaagaggaatggatacagaaaatgtggtacatttacacaatgga
gtactactcagctattaaaaagaatgaatttatgaaattcctaagcaaat
ggatggacctggagggtatcatcctgagtgaggtaacccaatcacaaaag
aactcacacaatatgtactcactgataattggatattagcccagaaactt
agaatacccaagatataagatacaatttgctaaactcatcaaactcaaga
agaataaagaccaaagtgtggacactttgccccttcttagaattgggaac
agaacacccatgtaaggaattacagagacaattctggagctgagatgaaa
ggatgaaccatctagagactgccatatctggggatccatcccataatcag
cttccaaaagctgacaccattgcatacactagcagattttattgaaagga
cccagatgtagctgtctcttgtgagactatgctggggcctagcaaacaca
gaagtggatgctcacagtcagctatgatggatcacagggccccatggaga
gctagagaagtaccagagctaactataggtgacacatatgactacagtac
ccttgagttcatgtctctagctgcattgattcgagatgctagtccgccta
tccatgtaagaagtcattggtctgccaaccttatgctagatacgcaacgc
aggtcagcactcgactgcgtgcgcgttgcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40832905_40834004
seq2: B6Ng01-196M08.b_43_1115

seq1  GAATTCACAATGATTTTTCTTCTCCCACAACCCATCAGTAACCAATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATGATTTTTCTTCTCCCACAACCCATCAGTAACCAATACTT  50

seq1  TAGCAAGGAAAGGCCCATTTTTAATCCCCAACTGAGAGTTGATAGGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGGAAAGGCCCATTTTTAATCCCCAACTGAGAGTTGATAGGACCA  100

seq1  GTCTTGGGTTGGCTTACTGCAGGCAGCCATAGCTACTATGAAGTCATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGTTGGCTTACTGCAGGCAGCCATAGCTACTATGAAGTCATGAC  150

seq1  TGCATTGACTGTGTCATACCATACCAAGAAGACAACATTTCCAACCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGACTGTGTCATACCATACCAAGAAGACAACATTTCCAACCCTTC  200

seq1  TCTCTGCCTCCTGACCATTATATTTTGTTTTCTGTCTTCCCATATGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCCTGACCATTATATTTTGTTTTCTGTCTTCCCATATGGATG  250

seq1  TTCTCATTTACTCTATTCCCACTGAACCATTCTGTCTCACTTTTCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTACTCTATTCCCACTGAACCATTCTGTCTCACTTTTCACCCA  300

seq1  AGTTCTTTGCCCTTAAAGGCCTGACATATTTCTCTCTGGCAGAATGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGCCCTTAAAGGCCTGACATATTTCTCTCTGGCAGAATGTGTG  350

seq1  CTTGCCACTTTTCTGAGCAACAGGCTTTAGTCATCTTTTTTCACATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCACTTTTCTGAGCAACAGGCTTTAGTCATCTTTTTTCACATCTGT  400

seq1  GGCTCAGGCTGTGAATTTTGGAATTAGACCAGAACTCTGATGGAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGGCTGTGAATTTTGGAATTAGACCAGAACTCTGATGGAAAACAA  450

seq1  GAAACTTCAGAGAATTTATGTGTCTCAGCTTCACCTCTTCAAACTTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCAGAGAATTTATGTGTCTCAGCTTCACCTCTTCAAACTTGTCT  500

seq1  GTTTTGCATAGTCCATAGGACAAGAAAGCCTCTGCACCCGGGGGTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCATAGTCCATAGGACAAGAAAGCCTCTGCACCCGGGGGTATAAA  550

seq1  GTGAATAGGGAAAACTGAGATGCCCAGCTGGAGGACTCCCATGTCATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGGGAAAACTGAGATGCCCAGCTGGAGGACTCCCATGTCATATT  600

seq1  TGCGAAGGTGCGAGGTGTAGAACAGCCGCATCCCTGAGGTATCACGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAGGTGCGAGGTGTAGAACAGCCGCATCCCTGAGGTATCACGGATA  650

seq1  CCTAGAGTACAAAGAAAATATTCTCCTCAGACGGTGGGAGTGGGTCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGTACAAAGAAAATATTCTCCTCAGACGGTGGGAGTGGGTCACAA  700

seq1  TGTTCAGGAAAGTTGAAATGGGCTGTGATTAACAGCATCCAGCATGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGAAAGTTGAAATGGGCTGTGATTAACAGCATCCAGCATGTATG  750

seq1  CCATAGATCTTCCATATCCAGCAGAACCAGTTGCCTCTACCAGCTGCCCT  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCATAGATCTTCCATATCCAGCAG-ACCAGTTGCCTCTACCAGCTGCCCT  799

seq1  CTCACATGTCCTTTGGATACTCACCAGGAAGGTTCTGAAAATTGCTGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGTCCTTTGGATACTCACCAGGAAGGTTCTGAAAATTGCTGTAG  849

seq1  TGAATTTCCAGTCTGATCCACTGAGGGTCAAAGGGGGTTCCAATAGAGAT  900
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TG-ATTTCCAGTCTGATCCACTGAGGGTCAAAGGGGGTTCC-ATAGAGAT  897

seq1  GCCCACATCATCTGGAAACTGGTAACTCTGTGAAGATTGAAAACCATGGC  950
      |||||||||||||||||||| ||||||||||||||| |||||  ||||||
seq2  GCCCACATCATCTGGAAACT-GTAACTCTGTGAAGA-TGAAA--CATGGC  943

seq1  AGTGATGTGAGAAAGGGTAGAGACAAACTCTGGCTCTGCCCTGGCTTTCT  1000
      |||||||||   || ||||||||| ||||||||||||| ||||   ||||
seq2  AGTGATGTGGAGAATGGTAGAGAC-AACTCTGGCTCTG-CCTG--CTTCT  989

seq1  AACCTTTCTTTTAGAACTTCTATGCCCCCAGTTCTTCTATTAGCCCATGG  1050
      |    ||| ||||| ||||||||| |||||||||||||| |||  |||| 
seq2  A---CTTCCTTTAG-ACTTCTATG-CCCCAGTTCTTCTA-TAG--CATG-  1030

seq1  CCTAACAGC-ATGTACCCCTTTGTCACAAAATGCCTTCATCTCATGACTC  1099
       || ||||| |||||||   | ||| | |||||||||||  || ||||||
seq2  -CT-ACAGCAATGTACC---TGGTC-CCAAATGCCTTCA--TCCTGACTC  1072

seq1  A  1100
      |
seq2  A  1073