BAC Information

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BAC

Clone NameB6Ng01-196N10
Chromosome6 (Build37)
Map Location 71,705,166 - 71,864,053
singlet/doubletdoublet
Overlap geneReep1, Mrpl35, Immt, Ptcd3, Rpo1-4
Upstream geneRpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034
Downstream geneLOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196N10.bB6Ng01-196N10.g
ACCGA018871GA018872
length9791,070
definitionB6Ng01-196N10.b B6Ng01-196N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,863,506 - 71,864,053)(71,705,166 - 71,706,210)
sequence
gaattctttgtttatacttgggttctgttgttaaaggaaatatttaaaaa
gttgcccagccatctctcctgcctgccggtgttcccgctctagtaccggt
actggcaggccacaacactatgtcccagcggggtcctgctcggcgtgttc
tccccgctgagctactctcccagctagcgagttcatcttgcttccacaca
gcgccccacacaccccacaatcagctatctcaacacctagttacccggta
gaaacatgactcttaaaacttaattatccaatcagatttatataacaata
agatcacaatttacaagataccaatacaataatttcagagccaattgata
atgataaaagctacatcccaattattctaaccttgtgaaaatcgtagcta
cttgtggtggtttaaaaactacttggagccgggcgtggtggcgcacacct
ttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgagg
ccagcctggtctacaaagtgagttccaggacagccagggctacacagaga
aaccctgtctcaaaaaaaccaaaaaaaaaaaaaaaaaaaaaactactcgg
gatcagaatcttcttcctgtttgtctgcctccattttggcttctctcctc
ctcctgttacctctctatcgctctccccaattcctagctccgcctccctt
ttcctgtccactcacaggcctgccactgccctaatgtgattggacaggaa
aatcctgcaacattcccttcctacaatatcaccattacatagcttataag
cattctaaaatctgaatttgtaatcaatttttgacctcaagcattttgga
caatggacactcagggtgtacagtttctaggtccataaaggatctttttt
ctaaagagacaggaacaggaagaggtgatccccacaacctcctaagtccc
aagacccacatgccagggcaccacttaca
gaattccagaactcaggagacattagcagccagaactcttgagagtctga
ggccgtcctggtctacataggccaaccagagctacaaagtgagactctgt
ttcagaaacataaatatatactgggtgggtaaaatggctcagtgtgtaaa
ggtgcttgctgccaagcctgatgacctgagttcgatccctgggactcaca
ttgtggaaccaaaaatactgactctcacaagttgtcctctgacttccatg
tgtgtgtcatggtacccatttgaatacatacacaaatgaataaattttta
aaacacctgttctcaggcatagagttgcatgcctgcaaccccagtactcg
gcaggctgagccaaggaggtcttcaggttgaggtccgcctagagcaaata
atgaggacctgtgctcagccctcggtgcatttatagttcactggtgagat
gcctatcaaagtgccaagtgaaagaacaccatgatgctatgtacaagatg
ctgagaaagttcattgggaagagtttgagctagtctgggaagtcagaggg
gtgtccagagaatcatgtgggagtcgggatctaatggatgagcaggtatt
aataaaaaaaaaaaaaaaaaaaaaaaaagacagggaagatttccagaaga
aagcagcattgacaaaggtaaggtatcaagaacgggcaggtagagcttcc
cctgaagatggatctcagatgcaggcctgagagttaactactcactgacc
cttagtgagagaagtgaaggcagaggaggtgtgctgatgggagggagatg
tggacctggtttagattttgtgaatatgaaagcttatgctggctgcaaga
tgctgaggtccaaattcaatgattcctaggcttccagcatctgctggtgg
aagatcaacatcaggagaggaaggccattctttccatgagctttagctgc
tgtcctccttcctgcctaaacctccaataattcttggttcgccctttccc
atattgcccaagccaagattagtaaggaagtgtggtggggtcggctgtgt
cctcagggaaaaggtgtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71863506_71864053
seq2: B6Ng01-196N10.b_47_594 (reverse)

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC  50

seq1  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG  100

seq1  GTGTGCGCCACCACGCCCGGCTCCAAGTAGTTTTTAAACCACCACAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGCCACCACGCCCGGCTCCAAGTAGTTTTTAAACCACCACAAGTA  150

seq1  GCTACGATTTTCACAAGGTTAGAATAATTGGGATGTAGCTTTTATCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGATTTTCACAAGGTTAGAATAATTGGGATGTAGCTTTTATCATTA  200

seq1  TCAATTGGCTCTGAAATTATTGTATTGGTATCTTGTAAATTGTGATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGGCTCTGAAATTATTGTATTGGTATCTTGTAAATTGTGATCTTA  250

seq1  TTGTTATATAAATCTGATTGGATAATTAAGTTTTAAGAGTCATGTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATATAAATCTGATTGGATAATTAAGTTTTAAGAGTCATGTTTCTA  300

seq1  CCGGGTAACTAGGTGTTGAGATAGCTGATTGTGGGGTGTGTGGGGCGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTAACTAGGTGTTGAGATAGCTGATTGTGGGGTGTGTGGGGCGCTG  350

seq1  TGTGGAAGCAAGATGAACTCGCTAGCTGGGAGAGTAGCTCAGCGGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGCAAGATGAACTCGCTAGCTGGGAGAGTAGCTCAGCGGGGAGA  400

seq1  ACACGCCGAGCAGGACCCCGCTGGGACATAGTGTTGTGGCCTGCCAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCCGAGCAGGACCCCGCTGGGACATAGTGTTGTGGCCTGCCAGTAC  450

seq1  CGGTACTAGAGCGGGAACACCGGCAGGCAGGAGAGATGGCTGGGCAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACTAGAGCGGGAACACCGGCAGGCAGGAGAGATGGCTGGGCAACTT  500

seq1  TTTAAATATTTCCTTTAACAACAGAACCCAAGTATAAACAAAGAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATTTCCTTTAACAACAGAACCCAAGTATAAACAAAGAATTC  548

seq1: chr6_71705166_71706210
seq2: B6Ng01-196N10.g_71_1140

seq1  GAATTCCAGAACTCAGGAGACATTAGCAGCCAGAACTCTTGAGAGTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACTCAGGAGACATTAGCAGCCAGAACTCTTGAGAGTCTGA  50

seq1  GGCCGTCCTGGTCTACATAGGCCAACCAGAGCTACAAAGTGAGACTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTCCTGGTCTACATAGGCCAACCAGAGCTACAAAGTGAGACTCTGT  100

seq1  TTCAGAAACATAAATATATACTGGGTGGGTAAAATGGCTCAGTGTGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACATAAATATATACTGGGTGGGTAAAATGGCTCAGTGTGTAAA  150

seq1  GGTGCTTGCTGCCAAGCCTGATGACCTGAGTTCGATCCCTGGGACTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTGCTGCCAAGCCTGATGACCTGAGTTCGATCCCTGGGACTCACA  200

seq1  TTGTGGAACCAAAAATACTGACTCTCACAAGTTGTCCTCTGACTTCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAACCAAAAATACTGACTCTCACAAGTTGTCCTCTGACTTCCATG  250

seq1  TGTGTGTCATGGTACCCATTTGAATACATACACAAATGAATAAATTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCATGGTACCCATTTGAATACATACACAAATGAATAAATTTTTA  300

seq1  AAACACCTGTTCTCAGGCATAGAGTTGCATGCCTGCAACCCCAGTACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTGTTCTCAGGCATAGAGTTGCATGCCTGCAACCCCAGTACTCG  350

seq1  GCAGGCTGAGCCAAGGAGGTCTTCAGGTTGAGGTCCGCCTAGAGCAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGAGCCAAGGAGGTCTTCAGGTTGAGGTCCGCCTAGAGCAAATA  400

seq1  ATGAGGACCTGTGCTCAGCCCTCGGTGCATTTATAGTTCACTGGTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGACCTGTGCTCAGCCCTCGGTGCATTTATAGTTCACTGGTGAGAT  450

seq1  GCCTATCAAAGTGCCAAGTGAAAGAACACCATGATGCTATGTACAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCAAAGTGCCAAGTGAAAGAACACCATGATGCTATGTACAAGATG  500

seq1  CTGAGAAAGTTCATTGGGAAGAG-TTGAGCTAGTCTGGGAAGTCAGAGGG  549
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGAGAAAGTTCATTGGGAAGAGTTTGAGCTAGTCTGGGAAGTCAGAGGG  550

seq1  GTGTCCAGAGAATCATGTGGGAGTCGGGATCTAATGGATGAGCAGGTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGAGAATCATGTGGGAGTCGGGATCTAATGGATGAGCAGGTATT  600

seq1  AATAAAAAAAAAAAAAAAAAAAAAAAAAGACAGGGAAGA-TTCCAGAAGA  648
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATAAAAAAAAAAAAAAAAAAAAAAAAAGACAGGGAAGATTTCCAGAAGA  650

seq1  AAGCAGCATTGACAAAGGTAAGGTATCAAGAACGGGCAGGTAGAGCTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCATTGACAAAGGTAAGGTATCAAGAACGGGCAGGTAGAGCTTCC  700

seq1  CCTGAAGATGGATCTCAGATGCAGGCCTGAGAGTTAACTACTCACTGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGATGGATCTCAGATGCAGGCCTGAGAGTTAACTACTCACTGACC  750

seq1  C-TAGTGAGAGAAGTGAAGGCAGAGGAGGTGTGCTGATGGGA-GGAGATG  796
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTAGTGAGAGAAGTGAAGGCAGAGGAGGTGTGCTGATGGGAGGGAGATG  800

seq1  TGGACCTGG-TTAGA-TTTGTGAATATGAAAGCTTATGCTGGCTGCAAGA  844
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  TGGACCTGGTTTAGATTTTGTGAATATGAAAGCTTATGCTGGCTGCAAGA  850

seq1  TGCTGAGG-CCAAATTCAATGA-TCCTAGGCTTCCAGCATCTGCTGGTGG  892
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  TGCTGAGGTCCAAATTCAATGATTCCTAGGCTTCCAGCATCTGCTGGTGG  900

seq1  -AGATCAACATCAGGAGAGGAA-GCCATCCTTCCACAGAGCCTTAGCTGC  940
       ||||||||||||||||||||| ||||| ||| |   |||| ||||||||
seq2  AAGATCAACATCAGGAGAGGAAGGCCATTCTTTCCATGAGCTTTAGCTGC  950

seq1  TGT-CTCC-TCCTGTCTTAACCTCC-ATAATTCTTGG-TCGCCCTT--CC  984
      ||| |||| ||||| || ||||||| ||||||||||| ||||||||  ||
seq2  TGTCCTCCTTCCTGCCTAAACCTCCAATAATTCTTGGTTCGCCCTTTCCC  1000

seq1  ATATTGCCCAAGCCAAGA-TAG-AAGGAAGTGT-GTGGG--TGGCTGT--  1027
      |||||||||||||||||| ||| |||||||||| |||||   ||||||  
seq2  ATATTGCCCAAGCCAAGATTAGTAAGGAAGTGTGGTGGGGTCGGCTGTGT  1050

seq1  -CTCA-GGAAAAGGTGTTTC  1045
       |||| ||||||||||||||
seq2  CCTCAGGGAAAAGGTGTTTC  1070