BAC Information

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BAC

Clone NameB6Ng01-197E10
Chromosome6 (Build37)
Map Location 59,965,564 - 60,062,955
singlet/doubletdoublet
Overlap geneEG434019, LOC671300
Upstream geneD430015B01Rik, Tigd2, Gprin3, EG634166, EG627108
Downstream geneEG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197E10.bB6Ng01-197E10.g
ACCGA019183GA019184
length1,1621,140
definitionB6Ng01-197E10.b B6Ng01-197E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,965,564 - 59,966,721)(60,061,817 - 60,062,955)
sequence
gaattcactttgtggagaagatgtgcaaaataaatcgcattcataattgt
gatttcattgatgataaggtttgagctgtgtgttatttttggctggtgag
tatggtgattcatcattattgtcatcattattatctttttatttttttgt
gtgtggctgtatatatgtctccccaccatggtgtacatagtgcccacagt
gtctgtataataggatcaaatgtggttgctgggaattgaacccaggtcct
acaaaggggagcggtgttcctaacagcttagctatctttccagtccatca
ttcctcttttactataatatagaacagagctacataatgtcttctcttag
ttaaaattctatgtacatagaagtcattgattcataaatgcatacacata
gaagatccactattcaatgacactgcttcaaattctcatcggaacgtggc
ttatgtcaccttatagtccaagaataaaatttgaattcagatgctttaaa
ggaaaacatggatataatttatgtttgagaaatgtaaaagaatatatcta
ggtttctccacttcatttcatcagtagcctacagagcaaaagactaacaa
tgaagataatagtataagttggagttggattttaaaactatgccataaat
ggaatccttactaactcttagatgcaactaatttggagactaaagttgtt
aattttggataatgtaaaattccatgtgagatgctcaaactgtaatgtac
ttagtaggtcaacaattgtgaacacagtagtctaccattttaaatgtgta
atatcccacattttgattccttctcaagaccccatgaaagacagaggtga
acaatactaaccagaggcagcaatgaaaagatggacagagaggagcccac
agtgtgacagcatacctgaggggggattccacatttgaagaaccattaaa
cagctctctctctctatctctctcctcttctccctcccttttgtctcctc
cttatctctcttccttccccaacttcttctcaatctctttctcttctttt
cttctcttctctctcctccacaaatgaggattacagaacagttgttgcat
agtggaggagcagcagggagtttgtggaaccttggtgaacggataccata
tcaaagtaaagc

gaattcaatgctgaattttattcattttttagtatttaaagatctattcc
caacacatttcaaaatatctcacaaaataaaaagagaaagttcacgtcaa
aacttagcctatgatactggtagtattctaaaacaaaaactctatacaga
gctaggcaaataggaaactacagctaaatctcattgataaaaatgggtga
gaaaaatattcaataatgtacttgcaaaccaaattcagtaaaacactaaa
atgatgcattgtaatattactaaggaaagaaatcacaatcatttaagaga
tagaaatagaaaatgaattcaataaatgtgtctttacttatgcggcaatg
attgtaaattcccactgttttgtttccttgacagtaaataaccacaatct
ttgatcaacaaaaaacacactgaatgtgaaaaatcacaagagttaattca
ctctggtaacactcactcattttcatcccctttcctctgccaaagctcac
agtaggtcaattgttggagagtctgaagtgttgatggattttgttctatt
ctaatgttttcaaggaaaatgacaaacatgtagtgtgttatttggtccca
agtcctttcccctatgtcttgattgtctaagatatgatgagtttgctatt
tcattgtttacaaataatataaatattaacttagggtggtaatctctttc
ccaaacacacatagacagtctaccaaaagctccagcgccaagcttgagat
gttgtcacttgaatttttattcaggggtattctatacattcctaaacaat
ataaactatagagaaattgacatgtcccttggttatctatctatatttaa
aggtaaaactctttctggaaatattttattacacaggagaacaagtattg
agctacaactagctcagaagcatcttccatgtggaccacctgccatagtg
ttctaaaatgctatgtaagtgttcaagggagaaaaaacagtctatttttc
ctactctagaatataagccaatggagcaccacaatccttactgagaaggc
tctggaaaccctcagaaaaaaagaacacaggtcatgggaagacagaggac
aggatgtctgcttggagcctatacttctaacatatgacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_59965564_59966721
seq2: B6Ng01-197E10.b_47_1208

seq1  GAATTCACTTTGTGGAGAAGATGTGCAAAATAAATCGCATTCATAATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTGGAGAAGATGTGCAAAATAAATCGCATTCATAATTGT  50

seq1  GATTTCATTGATGATAAGGTTTGAGCTGTGTGTTATTTTTGGCTGGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATTGATGATAAGGTTTGAGCTGTGTGTTATTTTTGGCTGGTGAG  100

seq1  TATGGTGATTCATCATTATTGTCATCATTATTATCTTTTTATTTTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGATTCATCATTATTGTCATCATTATTATCTTTTTATTTTTTTGT  150

seq1  GTGTGGCTGTATATATGTCTCCCCACCATGGTGTACATAGTGCCCACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTGTATATATGTCTCCCCACCATGGTGTACATAGTGCCCACAGT  200

seq1  GTCTGTATAATAGGATCAAATGTGGTTGCTGGGAATTGAACCCAGGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTATAATAGGATCAAATGTGGTTGCTGGGAATTGAACCCAGGTCCT  250

seq1  ACAAAGGGGAGCGGTGTTCCTAACAGCTTAGCTATCTTTCCAGTCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGGAGCGGTGTTCCTAACAGCTTAGCTATCTTTCCAGTCCATCA  300

seq1  TTCCTCTTTTACTATAATATAGAACAGAGCTACATAATGTCTTCTCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTTACTATAATATAGAACAGAGCTACATAATGTCTTCTCTTAG  350

seq1  TTAAAATTCTATGTACATAGAAGTCATTGATTCATAAATGCATACACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTCTATGTACATAGAAGTCATTGATTCATAAATGCATACACATA  400

seq1  GAAGATCCACTATTCAATGACACTGCTTCAAATTCTCATCGGAACGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCCACTATTCAATGACACTGCTTCAAATTCTCATCGGAACGTGGC  450

seq1  TTATGTCACCTTATAGTCCAAGAATAAAATTTGAATTCAGATGCTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCACCTTATAGTCCAAGAATAAAATTTGAATTCAGATGCTTTAAA  500

seq1  GGAAAACATGGATATAATTTATGTTTGAGAAATGTAAAAGAATATATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACATGGATATAATTTATGTTTGAGAAATGTAAAAGAATATATCTA  550

seq1  GGTTTCTCCACTTCATTTCATCAGTAGCCTACAGAGCAAAAGACTAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCCACTTCATTTCATCAGTAGCCTACAGAGCAAAAGACTAACAA  600

seq1  TGAAGATAATAGTATAAGTTGGAGTTGGATTTTAAAACTATGCCATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAATAGTATAAGTTGGAGTTGGATTTTAAAACTATGCCATAAAT  650

seq1  GGAATCCTTACTAACTCTTAGATGCAACTAATTTGGAGACTAAAGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCTTACTAACTCTTAGATGCAACTAATTTGGAGACTAAAGTTGTT  700

seq1  AATTTTGGATAATGTAAAATTCCATGTGAGATGCTCAAACTGTAATGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGATAATGTAAAATTCCATGTGAGATGCTCAAACTGTAATGTAC  750

seq1  TTAGTAGGTCAACAATTGTGAACACAGTAGTCTACCATTTTAAATGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGTCAACAATTGTGAACACAGTAGTCTACCATTTTAAATGTGTA  800

seq1  ATATCCCACATTTTGATTCCTTCTCAAGACCCCATGAAAGACAGAGGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCACATTTTGATTCCTTCTCAAGACCCCATGAAAGACAGAGGTGA  850

seq1  ACAATACTAACCAGAGGCAGCAATGAAAAGATGGACAGAGAGGAGCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTAACCAGAGGCAGCAATGAAAAGATGGACAGAGAGGAGCCCAC  900

seq1  AGTGTGACAGCATACCTGAGGGGGGATTCCACA-TTGAAGAA-CATTAAA  948
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  AGTGTGACAGCATACCTGAGGGGGGATTCCACATTTGAAGAACCATTAAA  950

seq1  CAGCTCTTCTCTCTCTATCTCTCTCCCTCTCTCCCTCCCTTTTTGTCTCC  998
      |||||| |||||||||||||||||||   |||||||||| |||||||| |
seq2  CAGCTC-TCTCTCTCTATCTCTCTCCTCTTCTCCCTCCC-TTTTGTCT-C  997

seq1  CTCCTTATCTCTCTCCCTCCCCCAAACTC-TCTCAATCTCTTCCTCT--C  1045
      |||||||||||||| ||| ||||||  || |||||||||||| ||||   
seq2  CTCCTTATCTCTCTTCCTTCCCCAACTTCTTCTCAATCTCTTTCTCTTCT  1047

seq1  TTTCTTCTCTCTCCTCTCCTCCCACAAAATGAAGGATAACAG-ACAGT--  1092
      ||||||||||   ||||||| |||| ||||| ||||| |||| |||||  
seq2  TTTCTTCTCTTCTCTCTCCT-CCAC-AAATG-AGGATTACAGAACAGTTG  1094

seq1  GTGCATAGT-GAAGAGCAGCA-GGAGTTTGTGGAA-CTTTGTGAACAGAT  1139
       |||||||| || |||||||| ||||||||||||| ||| |||||| |||
seq2  TTGCATAGTGGAGGAGCAGCAGGGAGTTTGTGGAACCTTGGTGAACGGAT  1144

seq1  ACTCATTCCAAAGTAAAGC  1158
      || |||  |||||||||||
seq2  AC-CATATCAAAGTAAAGC  1162


seq1: chr6_60061817_60062955
seq2: B6Ng01-197E10.g_66_1205 (reverse)

seq1  CTGTCATATG-TAGAAGGTATAAGCTCAAAGCAGACATCCTGGTCCTCTG  49
      |||||||||| ||||| ||||| |||| ||||||||||||| ||||||||
seq2  CTGTCATATGTTAGAA-GTATAGGCTCCAAGCAGACATCCT-GTCCTCTG  48

seq1  TCT--CCATGACCTTGTTGTTC-TTTTTTCTGAGGGTTTTCCAGAGCTTT  96
      |||  |||||||||   ||||| ||||||||||||| |||||||||| ||
seq2  TCTTCCCATGACCT--GTGTTCTTTTTTTCTGAGGG-TTTCCAGAGCCTT  95

seq1  CTCAGTAGGGATTGTGGTGCT-CATTGGCTTTATA-TCTAGAGTAGG-AA  143
      ||||||| ||||||||||||| ||||||| ||||| ||||||||||| ||
seq2  CTCAGTAAGGATTGTGGTGCTCCATTGGC-TTATATTCTAGAGTAGGAAA  144

seq1  AATAGACTG-TTTTTCTCCCTTGAACACTTACATAGCATTTTAGAACACT  192
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTGTTTTTTCTCCCTTGAACACTTACATAGCATTTTAGAACACT  194

seq1  ATGGCAGGTGGTCCACATGGAAGATGCTTCTGAGCTAGTTGTAGCTCAAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGTGGTCCACATGGAAGATGCTTCTGAGCTAGTTGTAGCTCAAT  244

seq1  ACTTTGTTCTCCTGTGTAATAAAATATTTCCAGAAAGAGTTTTACCTTTA  292
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-TTGTTCTCCTGTGTAATAAAATATTTCCAGAAAGAGTTTTACCTTTA  293

seq1  AATATAGATAGATAACCAAGGGACATGTCAATTTCTCTATAGTTTATATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGATAGATAACCAAGGGACATGTCAATTTCTCTATAGTTTATATT  343

seq1  GTTTAGGAATGTATAGAATACCCCTGAATAAAAATTCAAGTGACAACATC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGAATGTATAGAATACCCCTGAATAAAAATTCAAGTGACAACATC  393

seq1  TCAAGCTTGGCGCTGGAGCTTTTGGTAGACTGTCTATGTGTGTTTGGGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTGGCGCTGGAGCTTTTGGTAGACTGTCTATGTGTGTTTGGGAA  443

seq1  AGAGATTACCACCCTAAGTTAATATTTATATTATTTGTAAACAATGAAAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTACCACCCTAAGTTAATATTTATATTATTTGTAAACAATGAAAT  493

seq1  AGCAAACTCATCATATCTTAGACAATCAAGACATAGGGGAAAGGACTTGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTCATCATATCTTAGACAATCAAGACATAGGGGAAAGGACTTGG  543

seq1  GACCAAATAACACACTACATGTTTGTCATTTTCCTTGAAAACATTAGAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAATAACACACTACATGTTTGTCATTTTCCTTGAAAACATTAGAAT  593

seq1  AGAACAAAATCCATCAACACTTCAGACTCTCCAACAATTGACCTACTGTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAATCCATCAACACTTCAGACTCTCCAACAATTGACCTACTGTG  643

seq1  AGCTTTGGCAGAGGAAAGGGGATGAAAATGAGTGAGTGTTACCAGAGTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGCAGAGGAAAGGGGATGAAAATGAGTGAGTGTTACCAGAGTGA  693

seq1  ATTAACTCTTGTGATTTTTCACATTCAGTGTGTTTTTTGTTGATCAAAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCTTGTGATTTTTCACATTCAGTGTGTTTTTTGTTGATCAAAGA  743

seq1  TTGTGGTTATTTACTGTCAAGGAAACAAAACAGTGGGAATTTACAATCAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTATTTACTGTCAAGGAAACAAAACAGTGGGAATTTACAATCAT  793

seq1  TGCCGCATAAGTAAAGACACATTTATTGAATTCATTTTCTATTTCTATCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCATAAGTAAAGACACATTTATTGAATTCATTTTCTATTTCTATCT  843

seq1  CTTAAATGATTGTGATTTCTTTCCTTAGTAATATTACAATGCATCATTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGATTGTGATTTCTTTCCTTAGTAATATTACAATGCATCATTTT  893

seq1  AGTGTTTTACTGAATTTGGTTTGCAAGTACATTATTGAATATTTTTCTCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTACTGAATTTGGTTTGCAAGTACATTATTGAATATTTTTCTCA  943

seq1  CCCATTTTTATCAATGAGATTTAGCTGTAGTTTCCTATTTGCCTAGCTCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTATCAATGAGATTTAGCTGTAGTTTCCTATTTGCCTAGCTCT  993

seq1  GTATAGAGTTTTTGTTTTAGAATACTACCAGTATCATAGGCTAAGTTTTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAGTTTTTGTTTTAGAATACTACCAGTATCATAGGCTAAGTTTTG  1043

seq1  ACGTGAACTTTCTCTTTTTATTTTGTGAGATATTTTGAAATGTGTTGGGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAACTTTCTCTTTTTATTTTGTGAGATATTTTGAAATGTGTTGGGA  1093

seq1  ATAGATCTTTAAATACTAAAAAATGAATAAAATTCAGCATTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTTTAAATACTAAAAAATGAATAAAATTCAGCATTGAATTC  1140


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