BAC Information

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BAC

Clone NameB6Ng01-198M06
Chromosome6 (Build37)
Map Location 126,724,649 - 126,877,521
singlet/doubletdoublet
Overlap geneLOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1
Upstream geneTmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6
Downstream geneD6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8, Tspan11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198M06.bB6Ng01-198M06.g
ACCGA020280GA020281
length1,0831,052
definitionB6Ng01-198M06.b B6Ng01-198M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,724,649 - 126,725,713)(126,876,486 - 126,877,521)
sequence
gaattcctgccctgtgcttggtccataccatagcacctgtcctgtgtgtg
tcccagcctgtgacactgacagtgtacctttgtctggatgtgacatctgc
aacagccagtgttaccaatggtgagataaacctgcacctacctggtgctc
tggtcctctggaggatgcattctggaagggaggggaggcaagaaggcagg
catggggtgtaggcagaattggatcccaaagactcactctgacactggag
tgtttgggggctatgttttgttgccagtgtcaaagtggattcctagaccc
actcctatacatgggtagctggtgtgtctgtggtactccactccactcca
ctccatctttagcaaaggccccctgcttggtgtgaaggttctaaagatta
agaaatttctaggctttgctctagagacagtccccatgtttagaactgct
taaatcagcaagagccaccataccctgttgcagggtgtgagacacccaga
cccaccagccacagcctatttaccctgacaagaagagtgttaaacatttt
ccaaaagcactaaaaaagcttgttttttaaaaggagggggactgcataga
tggttcattgagtagagtgattgacatacaagtgtgaggaccagagttcg
catccccaacaccaagtaaatgctggtaatcccagcacttaggaagacct
gcaggagattcctgaagcaagcctgacgagctatgctagtcatatctgtg
cattccggcttcaagtaagagatgctgcctcagtatataaggtgaaaagc
aatgaaaggaagacacccagtgccaacccttgagccttctctctctctct
ctctctctctctctctctcacacacacacacacacacacacacacacatc
gtcacacgcacacgcacacacacatgtgcacatatgccctacactacacc
gatattgaacataaacacacacattcttcacttattacacatacaccacc
ccaaaaaagtattaaaaaaaacaccatatttttttatgccttgcttctaa
attacctttcaagatagcataccaaagaactgg
gaattcagtaagacttcttggagaccaggatgcatacaaggcactgtact
gagcctttgaagaactcatagaacagttaaattgaacttggccacataga
gagaagctgtctaggggtaacctttaagccatatctggacaaacagcatt
agaaaacaaaaagaagcaagtcacatttctgactgagggaaaggtgtgtg
cactgaaacagactagcacgtgcgagaacttaaggaagttaagactggag
agccaggctgggttccactagccatggaacaactcttgacctgttccaac
aggcttcagctttttatataactagtagaaacatatgaagtattttgagt
tgaaagtaatatgaaactattttattatcagttgttttcagacttaatag
aaatgagggcaaagggaaaatatggtgaccttgacaaaattgtaatgtgt
taaaaatttaaaagaataagtctgtacattaataccaatcagatacggtg
ttttagattttaccatgctgtcagcaaataacaggtctgttcactcactg
aaatatttgatgcttatgatgtatattatagtctaggcgctagggagata
gtaatgagaaagcagctcagattctaatgagagtgggtcacagatagtaa
acacatatgtaatgtttttagagtgatgggtgtacaaactgaagggcctc
aggtagctcagcggaacttgtccagcaagtgtggattctggggtttgagc
tctaggacaagaaagtaaaccccactgaggaggaggaagtgtgacggtta
tagaaggctgctggggatgacggggaggtgttaggtcatgagaggctgac
atttgaggccagatactgcttttcatggaggccaagagcattccttagtg
gcattgaagtgacaagtgggggacccgtggcagaatggcataaacagaaa
gtttcacgttttagaaccaagacacaatggtgtaatttttctggtttagg
tgaaggttaaaagtgaatcctgaattttgattgaaaagtaaaaaaaagtg
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126724649_126725713
seq2: B6Ng01-198M06.b_48_1130

seq1  GAATTCCTGCCCTGTGCTTGGTCCATACCATAGCACCTGTCCTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCCTGTGCTTGGTCCATACCATAGCACCTGTCCTGTGTGTG  50

seq1  TCCCAGCCTGTGACACTGACAGTGTACCTTTGTCTGGATGTGACATCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCTGTGACACTGACAGTGTACCTTTGTCTGGATGTGACATCTGC  100

seq1  AACAGCCAGTGTTACCAATGGTGAGATAAACCTGCACCTACCTGGTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCAGTGTTACCAATGGTGAGATAAACCTGCACCTACCTGGTGCTC  150

seq1  TGGTCCTCTGGAGGATGCATTCTGGAAGGGAGGGGAGGCAAGAAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCTGGAGGATGCATTCTGGAAGGGAGGGGAGGCAAGAAGGCAGG  200

seq1  CATGGGGTGTAGGCAGAATTGGATCCCAAAGACTCACTCTGACACTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGTGTAGGCAGAATTGGATCCCAAAGACTCACTCTGACACTGGAG  250

seq1  TGTTTGGGGGCTATGTTTTGTTGCCAGTGTCAAAGTGGATTCCTAGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGGGCTATGTTTTGTTGCCAGTGTCAAAGTGGATTCCTAGACCC  300

seq1  ACTCCTATACATGGGTAGCTGGTGTGTCTGTGGTACTCCACTCCACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATACATGGGTAGCTGGTGTGTCTGTGGTACTCCACTCCACTCCA  350

seq1  CTCCATCTTTAGCAAAGGCCCCCTGCTTGGTGTGAAGGTTCTAAAGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTTAGCAAAGGCCCCCTGCTTGGTGTGAAGGTTCTAAAGATTA  400

seq1  AGAAATTTCTAGGCTTTGCTCTAGAGACAGTCCCCATGTTTAGAACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTCTAGGCTTTGCTCTAGAGACAGTCCCCATGTTTAGAACTGCT  450

seq1  TAAATCAGCAAGAGCCACCATACCCTGTTGCAGGGTGTGAGACACCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGCAAGAGCCACCATACCCTGTTGCAGGGTGTGAGACACCCAGA  500

seq1  CCCACCAGCCACAGCCTATTTACCCTGACAAGAAGAGTGTTAAACATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGCCACAGCCTATTTACCCTGACAAGAAGAGTGTTAAACATTTT  550

seq1  CCAAAAGCACTAAAAAAGCTTGTTTTTTAAAAGGAGGGGGACTGCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCACTAAAAAAGCTTGTTTTTTAAAAGGAGGGGGACTGCATAGA  600

seq1  TGGTTCATTGAGTAGAGTGATTGACATACAAGTGTGAGGACCAGAGTTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATTGAGTAGAGTGATTGACATACAAGTGTGAGGACCAGAGTTCG  650

seq1  CATCCCCAACACCAAGTAAATGCTGGTAATCCCAGCACTTAGGAAGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAACACCAAGTAAATGCTGGTAATCCCAGCACTTAGGAAGACCT  700

seq1  GCAGGAGATTCCTGAAGCAAGCCTGACGAGCTATGCTAGTCATATCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGATTCCTGAAGCAAGCCTGACGAGCTATGCTAGTCATATCTGTG  750

seq1  CATTCCGGCTTCAAGTAAGAGATGCTGCCTCAGTATATAAGGTGAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCGGCTTCAAGTAAGAGATGCTGCCTCAGTATATAAGGTGAAAAGC  800

seq1  AATG-AAGGAAGACACCCAGTGCCAA-CCTTGAGCCTTCTCTCTCTCTCT  848
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATGAAAGGAAGACACCCAGTGCCAACCCTTGAGCCTTCTCTCTCTCTCT  850

seq1  CTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACA-C  897
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACATC  900

seq1  G-CACACGCACACGCACACACACATGTGCACATATG-CCTACAC-ACACC  944
      | |||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  GTCACACGCACACGCACACACACATGTGCACATATGCCCTACACTACACC  950

seq1  GATA-TGAACATAAACACACACAT--CTCACTTA-TACACATACAC--AC  988
      |||| |||||||||||||||||||   ||||||| |||||||||||   |
seq2  GATATTGAACATAAACACACACATTCTTCACTTATTACACATACACCACC  1000

seq1  CCAAAAAAGTA-TAAAAAAAACACAATATTTTTTTATG-CTTGC-TCTAA  1035
      ||||||||||| |||||||||||| ||||||||||||| ||||| |||||
seq2  CCAAAAAAGTATTAAAAAAAACACCATATTTTTTTATGCCTTGCTTCTAA  1050

seq1  ATTAAC-TTCAGGTTAGCATA-CAAAG-ACTGG  1065
      |||| | |||| | ||||||| ||||| |||||
seq2  ATTACCTTTCAAGATAGCATACCAAAGAACTGG  1083

seq1: chr6_126876486_126877521
seq2: B6Ng01-198M06.g_64_1115 (reverse)

seq1  ATCAC-TTTCTTTACTCT--CATCAAAA-TCAGGA-TCACTTTCTGAACC  45
      ||||| ||| |||||| |   ||||||| |||||| ||||||  | ||||
seq2  ATCACTTTTTTTTACTTTTCAATCAAAATTCAGGATTCACTT--TTAACC  48

seq1  TTCACCTAAAACAG-AAAATTACA-CATTGTGTCTTGGTTCTAAAACGTG  93
      |||||||||| ||| ||||||||| |||||||||||||||||||||||||
seq2  TTCACCTAAACCAGAAAAATTACACCATTGTGTCTTGGTTCTAAAACGTG  98

seq1  AAAC-TTCTG-TTATGCCA-TCTGCCACGG--TCCCCAC-TGTCAC-TCA  136
      |||| ||||| |||||||| ||||||||||   |||||| |||||| |||
seq2  AAACTTTCTGTTTATGCCATTCTGCCACGGGTCCCCCACTTGTCACTTCA  148

seq1  GTG-CACTAAGG-ATGCTCTT-GCCTCCATG-AAAGCAGTTTCTGGCCTC  182
       || |||||||| |||||||| ||||||||| |||||||| |||||||||
seq2  ATGCCACTAAGGAATGCTCTTGGCCTCCATGAAAAGCAGTATCTGGCCTC  198

seq1  AAATGTCAGCCTCTCCTGACCTAACACCTCCCCGTCATCCCCAGCAGCCT  232
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAATGTCAGCCTCTCATGACCTAACACCTCCCCGTCATCCCCAGCAGCCT  248

seq1  TCTATAACCGTCACACTTCCTCCTCCTCAGTGGGGTTTACTTTCTTGTCC  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACCGTCACACTTCCTCCTCCTCAGTGGGGTTTACTTTCTTGTCC  298

seq1  TAGAGCTCAAACCCCAGAATCCACACTTGCTGGACAAGTTCCGCTGAGCT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCAAACCCCAGAATCCACACTTGCTGGACAAGTTCCGCTGAGCT  348

seq1  ACCTGAGGCCCTTCAGTTTGTACACCCATCACTCTAAAAACATTACATAT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGGCCCTTCAGTTTGTACACCCATCACTCTAAAAACATTACATAT  398

seq1  GTGTTTACTATCTGTGACCCACTCTCATTAGAATCTGAGCTGCTTTCTCA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACTATCTGTGACCCACTCTCATTAGAATCTGAGCTGCTTTCTCA  448

seq1  TTACTATCTCCCTAGCGCCTAGACTATAATATACATCATAAGCATCAAAT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATCTCCCTAGCGCCTAGACTATAATATACATCATAAGCATCAAAT  498

seq1  ATTTCAGTGAGTGAACAGACCTGTTATTTGCTGACAGCATGGTAAAATCT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTGAGTGAACAGACCTGTTATTTGCTGACAGCATGGTAAAATCT  548

seq1  AAAACACCGTATCTGATTGGTATTAATGTACAGACTTATTCTTTTAAATT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCGTATCTGATTGGTATTAATGTACAGACTTATTCTTTTAAATT  598

seq1  TTTAACACATTACAATTTTGTCAAGGTCACCATATTTTCCCTTTGCCCTC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACACATTACAATTTTGTCAAGGTCACCATATTTTCCCTTTGCCCTC  648

seq1  ATTTCTATTAAGTCTGAAAACAACTGATAATAAAATAGTTTCATATTACT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTAAGTCTGAAAACAACTGATAATAAAATAGTTTCATATTACT  698

seq1  TTCAACTCAAAATACTTCATATGTTTCTACTAGTTATATAAAAAGCTGAA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCAAAATACTTCATATGTTTCTACTAGTTATATAAAAAGCTGAA  748

seq1  GCCTGTTGGAACAGGTCAAGAGTTGTTCCATGGCTAGTGGAACCCAGCCT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGGAACAGGTCAAGAGTTGTTCCATGGCTAGTGGAACCCAGCCT  798

seq1  GGCTCTCCAGTCTTAACTTCCTTAAGTTCTCGCACGTGCTAGTCTGTTTC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCAGTCTTAACTTCCTTAAGTTCTCGCACGTGCTAGTCTGTTTC  848

seq1  AGTGCACACACCTTTCCCTCAGTCAGAAATGTGACTTGCTTCTTTTTGTT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACACACCTTTCCCTCAGTCAGAAATGTGACTTGCTTCTTTTTGTT  898

seq1  TTCTAATGCTGTTTGTCCAGATATGGCTTAAAGGTTACCCCTAGACAGCT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGCTGTTTGTCCAGATATGGCTTAAAGGTTACCCCTAGACAGCT  948

seq1  TCTCTCTATGTGGCCAAGTTCAATTTAACTGTTCTATGAGTTCTTCAAAG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTATGTGGCCAAGTTCAATTTAACTGTTCTATGAGTTCTTCAAAG  998

seq1  GCTCAGTACAGTGCCTTGTATGCATCCTGGTCTCCAAGAAGTCTTACTGA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTACAGTGCCTTGTATGCATCCTGGTCTCCAAGAAGTCTTACTGA  1048

seq1  ATTC  1036
      ||||
seq2  ATTC  1052