BAC Information

Click to search

BAC

Clone NameB6Ng01-198P01
Chromosome6 (Build37)
Map Location 99,299,047 - 99,439,485
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198P01.bB6Ng01-198P01.g
ACCGA020402GA020403
length536390
definitionB6Ng01-198P01.b B6Ng01-198P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,299,047 - 99,299,588)(99,439,090 - 99,439,485)
sequence
attcctttttaagttcacaaatacatgaaatattatgcatatatcaccag
taatgtactaatagcattatctggctgacccatgtaatgaaactatttca
aattctttgtgaacttttatctaaaaagcaggtggttaactagacagaac
gtttatagggcacacatttctttgatcaatttgtgtataattattatttt
gtgtttactttaatctggatatagaatttcaatttttttaatagatactt
gggaagtataagcattttttttgatagcaacatagtttataaagataaca
aagctcccatagaagcactaggcaacaaggagatgggaaatcttcttacc
actgttcaacacacttagcgaagaaatccaaagtaaatattaaagggttt
aaaagatacttcagttggaaaattgcttcccttgcaggcctaaggactga
aggctgattcccaaaacctacagtttttgttgttgttgttgttgttgctg
ctgctgctgctgctggtggtggttttggttttttgt

ctgcttcttgtgggctggctgccttcactttctttcctggggaactgacc
actagttctggccagctggcttgtgaatgtgaagtgtcagaagttgggtg
ctgtggctagtagctcacaccctgacccctcctggggcaaaccatcaccc
acttcactgcccagtagtcccacgcatacattgtctcctcccctgaaaga
cagtagagtggtgagggttaatgagaaactggcctggctttcagacagtt
tccaggagatacaggtattatttaaagtgatttaggaaaacaaaacatga
tagtttactggaagaaaaagtcagggtgaatgaggcagaggaaagggaga
tgggaccctggctcctttaaacatggaatggggggtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99299047_99299588
seq2: B6Ng01-198P01.b_47_588

seq1  GAATTCATTCCTTTTTAAGTTCACAAATACATGAAATATTATGCATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTTTTTAAGTTCACAAATACATGAAATATTATGCATATAT  50

seq1  CACCAGTAATGTACTAATAGCATTATCTGGCTGACCCATGTAATGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTAATGTACTAATAGCATTATCTGGCTGACCCATGTAATGAAACT  100

seq1  ATTTCAAATTCTTTGTGAACTTTTATCTAAAAAGCAGGTGGTTAACTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATTCTTTGTGAACTTTTATCTAAAAAGCAGGTGGTTAACTAGA  150

seq1  CAGAACGTTTATAGGGCACACATTTCTTTGATCAATTTGTGTATAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGTTTATAGGGCACACATTTCTTTGATCAATTTGTGTATAATTAT  200

seq1  TATTTTGTGTTTACTTTAATCTGGATATAGAATTTCAATTTTTTTAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGTTTACTTTAATCTGGATATAGAATTTCAATTTTTTTAATAG  250

seq1  ATACTTGGGAAGTATAAGCATTTTTTTTGATAGCAACATAGTTTATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGGGAAGTATAAGCATTTTTTTTGATAGCAACATAGTTTATAAAG  300

seq1  ATAACAAAGCTCCCATAGAAGCACTAGGCAACAAGGAGATGGGAAATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGCTCCCATAGAAGCACTAGGCAACAAGGAGATGGGAAATCTT  350

seq1  CTTACCACTGTTCAACACACTTAGCGAAGAAATCCAAAGTAAATATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACTGTTCAACACACTTAGCGAAGAAATCCAAAGTAAATATTAAA  400

seq1  GGGTTTAAAAGATACTTCAGTTGGAAAATTGCTTCCCTTGCAGGCCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAAAAGATACTTCAGTTGGAAAATTGCTTCCCTTGCAGGCCTAAG  450

seq1  GACTGAAGGCTGATTCCCAAAACCTACAGTTTTTGTTGTTGTTGTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGGCTGATTCCCAAAACCTACAGTTTTTGTTGTTGTTGTTGTTG  500

seq1  TTGCTGCTGCTGCTGCTGCTGGTGGTGGTTTTGGTTTTTTGT  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTGCTGCTGCTGCTGGTGGTGGTTTTGGTTTTTTGT  542


seq1: chr6_99439090_99439485
seq2: B6Ng01-198P01.g_66_461 (reverse)

seq1  CCTCACCCCCCATTCCATGTTTAAAGGAGCCAGGGTCCCATCTCCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCCCCATTCCATGTTTAAAGGAGCCAGGGTCCCATCTCCCTTTC  50

seq1  CTCTGCCTCATTCACCCTGACTTTTTCTTCCAGTAAACTATCATGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCATTCACCCTGACTTTTTCTTCCAGTAAACTATCATGTTTTG  100

seq1  TTTTCCTAAATCACTTTAAATAATACCTGTATCTCCTGGAAACTGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAAATCACTTTAAATAATACCTGTATCTCCTGGAAACTGTCTGA  150

seq1  AAGCCAGGCCAGTTTCTCATTAACCCTCACCACTCTACTGTCTTTCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGCCAGTTTCTCATTAACCCTCACCACTCTACTGTCTTTCAGGG  200

seq1  GAGGAGACAATGTATGCGTGGGACTACTGGGCAGTGAAGTGGGTGATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACAATGTATGCGTGGGACTACTGGGCAGTGAAGTGGGTGATGGT  250

seq1  TTGCCCCAGGAGGGGTCAGGGTGTGAGCTACTAGCCACAGCACCCAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCAGGAGGGGTCAGGGTGTGAGCTACTAGCCACAGCACCCAACTT  300

seq1  CTGACACTTCACATTCACAAGCCAGCTGGCCAGAACTAGTGGTCAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTTCACATTCACAAGCCAGCTGGCCAGAACTAGTGGTCAGTTCC  350

seq1  CCAGGAAAGAAAGTGAAGGCAGCCAGCCCACAAGAAGCAGGAATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGAAAGTGAAGGCAGCCAGCCCACAAGAAGCAGGAATTC  396


| Home | SequenceCutter | Blast | Download |