BAC Information

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BAC

Clone NameB6Ng01-199B11
Chromosome6 (Build37)
Map Location 10,456,100 - 10,589,536
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199B11.bB6Ng01-199B11.g
ACCGA020517GA020518
length1,1831,109
definitionB6Ng01-199B11.b B6Ng01-199B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,456,100 - 10,457,258)(10,588,474 - 10,589,536)
sequence
gaattctacacacagcctgagaaccaacagaagtcagaagaaataaaata
ctatcctttcctaggctcttttgaaaggaattttactaaaacatttttat
tttcatataaattattattaattatttgatagtttcatactatgtatttt
cattataatcaccaaccactctttaccctaactcttcccggatccacaca
ctccctgtccatgaagtaaacactaataggcttaaaggcccagaatatca
tcaatacaataatatgggtgacttcagtacctacagtcttaccattagga
acaccttgattttgagcatgcatttgttataatgtgacagaattgtctgg
tattttaagccattcagcttccttagcttctagatacaaagaaatttaat
aatacataaaatactttataacacacagtaatttatatatggacaccaaa
agatatgtcagggttacatgacacaattcaatacacgtaaatatggtgta
tgaaacattcagagaaacaacatttgtcgaaggtaatcatattccataca
atgttgctaaggcttgactttgaatgcatagcaatagccatggtcataga
gcaagttctttctggttgacacatgtgggttctgagttccctctgcatta
ttgtctttaaatctaatttaaaaaaattgactgaaaatgttttaactgtg
cgaaattttgataataaaaaacaataatcaattccaaggagcaatatcta
ttggaaaacttcctaagtatgcttttattatccccatcaatggaatattg
acaaagcagcacaggaaatggaatctcaactttctactcatttactgtca
aggaggaatgggaagttttgctgatcagcaaggcagggtggtacatgcat
ctttcattttgtttattatatgtacttttaagataaagcaagtgaatatt
caaggaatgcagtagtcttcaactgctctttgaataaaaaatcaattgca
taatttcatgttaattattaggtccagggaaagttacttttgcttaattt
taatattaatttaaatattgccagttttttcatttttatacttaattcct
atgtggtggcagcttgttcaccttggtggaaacaaacgaacctgtgcaca
ttgatacccatagacttcatgaaaaagtattgt

gaattcttacaagtaaactcagatgagtaggataaagaactgtattttga
aaaggaattgattctcaaggtccatctcatggatgactctgaagatgcag
aaagatctggagctaagaaatgtgagcactctgtacaggttaggaaaagc
ctacagtttctaaacagttgtaaattaatagctccaatactaccaataca
aagggatgaattctatcactgatcataccagcaggactataaaaggagat
tcttccctggaacctcaagaaaggagctcaattctgccactatgtcacat
ttaatacatgggaatgtacaattaaccgatgtttttatctttagtacttt
tgtttaagccattggtgcattttaccttgcatggcaacacagaaaataca
ttaaaaccttttaattaaatagaaatactctatatttagttaaatagaaa
taatgtctccatggacacagactatcacttctattattttccccatcatt
taaaactgtacttacaagaattttgttcatttgttttaaaggtcttataa
ttgctaaaatcaaaacttctttaaagacatagttaaaaatcactgctcaa
ctctaaatgttactttttctacatttcttttttttaaattaatttatttt
ttacgctccatattccatttccagcttcccatgcaccctctgactggtca
catcccacatctcctccctacctccctgtctctatgttgataccccaccc
ccaccctacctgacatctaaacttcctagggcctccagtctctggagggt
taagtccaccatctctgaatgaaccacagacccagaattcctctactgta
ttgtgtgtttgccggcctcatatcagctgctggtatgctttctgtttggg
tgagtccagtgtttgagagatcttaggggtccagatttattgagactgct
gatcctcctacaggaatggccctctcctcagctttctttctggccttccc
ttaattcacaaacagggattcagttgcttctgtccattgggtttggtaca
aaatatccacatcttgtggggggcatcaaggtctatacaccagaagtctt
ggtcctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_10456100_10457258
seq2: B6Ng01-199B11.b_32_1214

seq1  GAATTCTACACACAGCCTGAGAACCAACAGAAGTCAGAAGAAATAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACACAGCCTGAGAACCAACAGAAGTCAGAAGAAATAAAATA  50

seq1  CTATCCTTTCCTAGGCTCTTTTGAAAGGAATTTTACTAAAACATTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTTCCTAGGCTCTTTTGAAAGGAATTTTACTAAAACATTTTTAT  100

seq1  TTTCATATAAATTATTATTAATTATTTGATAGTTTCATACTATGTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATAAATTATTATTAATTATTTGATAGTTTCATACTATGTATTTT  150

seq1  CATTATAATCACCAACCACTCTTTACCCTAACTCTTCCCGGATCCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAATCACCAACCACTCTTTACCCTAACTCTTCCCGGATCCACACA  200

seq1  CTCCCTGTCCATGAAGTAAACACTAATAGGCTTAAAGGCCCAGAATATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTCCATGAAGTAAACACTAATAGGCTTAAAGGCCCAGAATATCA  250

seq1  TCAATACAATAATATGGGTGACTTCAGTACCTACAGTCTTACCATTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACAATAATATGGGTGACTTCAGTACCTACAGTCTTACCATTAGGA  300

seq1  ACACCTTGATTTTGAGCATGCATTTGTTATAATGTGACAGAATTGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGATTTTGAGCATGCATTTGTTATAATGTGACAGAATTGTCTGG  350

seq1  TATTTTAAGCCATTCAGCTTCCTTAGCTTCTAGATACAAAGAAATTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGCCATTCAGCTTCCTTAGCTTCTAGATACAAAGAAATTTAAT  400

seq1  AATACATAAAATACTTTATAACACACAGTAATTTATATATGGACACCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAAATACTTTATAACACACAGTAATTTATATATGGACACCAAA  450

seq1  AGATATGTCAGGGTTACATGACACAATTCAATACACGTAAATATGGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGTCAGGGTTACATGACACAATTCAATACACGTAAATATGGTGTA  500

seq1  TGAAACATTCAGAGAAACAACATTTGTCGAAGGTAATCATATTCCATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATTCAGAGAAACAACATTTGTCGAAGGTAATCATATTCCATACA  550

seq1  ATGTTGCTAAGGCTTGACTTTGAATGCATAGCAATAGCCATGGTCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTAAGGCTTGACTTTGAATGCATAGCAATAGCCATGGTCATAGA  600

seq1  GCAAGTTCTTTCTGGTTGACACATGTGGGTTCTGAGTTCCCTCTGCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTCTTTCTGGTTGACACATGTGGGTTCTGAGTTCCCTCTGCATTA  650

seq1  TTGTCTTTAAATCTAATTTAAAAAAATTGACTGAAAATGTTTTAACTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTAAATCTAATTTAAAAAAATTGACTGAAAATGTTTTAACTGTG  700

seq1  CGAAATTTTGATAATAAAAAACAATAATCAATTCCAAGGAGCAATATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATTTTGATAATAAAAAACAATAATCAATTCCAAGGAGCAATATCTA  750

seq1  TTGGAAAACTTCCTAAGTATGCTTTTATTATCCCCATCAATGGAATATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAACTTCCTAAGTATGCTTTTATTATCCCCATCAATGGAATATTG  800

seq1  ACAAAGCAGCACAGGAAATGGAATCTCAAC-TTCTACTCATTTACTGTCA  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAAAGCAGCACAGGAAATGGAATCTCAACTTTCTACTCATTTACTGTCA  850

seq1  AGGAGGAATGGGAAG-TTTGCTGATCAGCAAGGCAGGGTGGTACATGCAT  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGAGGAATGGGAAGTTTTGCTGATCAGCAAGGCAGGGTGGTACATGCAT  900

seq1  CTTTCA-TTTGTTTA-TATATGTACTTTTAAGATAAAGCAAGTGAATATT  946
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTTGTTTATTATATGTACTTTTAAGATAAAGCAAGTGAATATT  950

seq1  C-AGGAATGCAGTAGTCTTCAAACTGCTC-TTGA--TAAAAATCAA-TGC  991
      | |||||||||||||||||| |||||||| ||||   ||||||||| |||
seq2  CAAGGAATGCAGTAGTCTTC-AACTGCTCTTTGAATAAAAAATCAATTGC  999

seq1  ATAA-TTCATGTTAATTATTA-GTC--AGGAAAG-TAC-TTTGCTT-ATT  1034
      |||| |||||||||||||||| |||   |||||| ||| ||||||| |||
seq2  ATAATTTCATGTTAATTATTAGGTCCAGGGAAAGTTACTTTTGCTTAATT  1049

seq1  TTAATA-TAATTT-AATAATG-CAG-TTTTTCA-TTTTATA-TTAAT--C  1076
      |||||| |||||| |||| || ||| ||||||| ||||||| |||||  |
seq2  TTAATATTAATTTAAATATTGCCAGTTTTTTCATTTTTATACTTAATTCC  1099

seq1  TATGTG--TGCAGCTTTGTTCACCT--GTGGACACAAACAGAACTGTGCA  1122
      ||||||   ||||| ||||||||||  ||||| ||||||  | |||||||
seq2  TATGTGGTGGCAGC-TTGTTCACCTTGGTGGAAACAAACGAACCTGTGCA  1148

seq1  CATTGATA-CCATAGACTTTCATTGATAAAAGTATTGT  1159
      |||||||| |||||||| |||| ||| |||||||||||
seq2  CATTGATACCCATAGAC-TTCA-TGA-AAAAGTATTGT  1183


seq1: chr6_10588474_10589536
seq2: B6Ng01-199B11.g_90_1170 (reverse)

seq1  CTGAAGACC-AGACTTTCTGTGTATAG--CCTGATGCCCCAC---AGATG  44
      |||| |||| ||||||   ||||||||  | ||||||||| |   |||||
seq2  CTGAGGACCAAGACTTCTGGTGTATAGACCTTGATGCCCCCCACAAGATG  50

seq1  TGGATA-TTTGTACCCAA-CCAATGGACAGAAGCAACTG-ATCCTTGTTG  91
      |||||| |||||||| || |||||||||||||||||||| |||| |||| 
seq2  TGGATATTTTGTACCAAACCCAATGGACAGAAGCAACTGAATCCCTGTTT  100

seq1  TTGAATT-AGGGAAGG-CAGAAAG-AAGCTGAGGAGAAGGGCCA-TCCTG  137
       |||||| |||||||| ||||||| ||||||||||| ||||||| |||||
seq2  GTGAATTAAGGGAAGGCCAGAAAGAAAGCTGAGGAG-AGGGCCATTCCTG  149

seq1  TAGGAGGATCAGCAGTCTCAATTAATCTGGACCCCTAAGATCTCTCAAAC  187
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGGAGGATCAGCAGTCTCAATAAATCTGGACCCCTAAGATCTCTCAAAC  199

seq1  ACTGGAC-CA-CCAAACAGAAAGCATA-CAGCAGCTGATATGAGGCCGGC  234
      ||||||| || |||||||||||||||| ||||||||||||||||||||||
seq2  ACTGGACTCACCCAAACAGAAAGCATACCAGCAGCTGATATGAGGCCGGC  249

seq1  -AACACAC-ATACAGTAGAGGAATTCTGGGTCTGT-GTTCATTCAGAGAT  281
       ||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  AAACACACAATACAGTAGAGGAATTCTGGGTCTGTGGTTCATTCAGAGAT  299

seq1  GGTGGACTTAACCCTCCAGAGACTGGAGGCCCTAGGAAGTTTAGATGTCA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACTTAACCCTCCAGAGACTGGAGGCCCTAGGAAGTTTAGATGTCA  349

seq1  GGTAGGGTGGGGGTGGGGTATCAACATAGAGACAGGGAGGTAGGGAGGAG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTGGGGGTGGGGTATCAACATAGAGACAGGGAGGTAGGGAGGAG  399

seq1  ATGTGGGATGTGACCAGTCAGAGGGTGCATGGGAAGCTGGAAATGGAATA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGATGTGACCAGTCAGAGGGTGCATGGGAAGCTGGAAATGGAATA  449

seq1  TGGAGCGTAAAAAATAAATTAATTTAAAAAAAAGAAATGTAGAAAAAGTA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGTAAAAAATAAATTAATTTAAAAAAAAGAAATGTAGAAAAAGTA  499

seq1  ACATTTAGAGTTGAGCAGTGATTTTTAACTATGTCTTTAAAGAAGTTTTG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGAGTTGAGCAGTGATTTTTAACTATGTCTTTAAAGAAGTTTTG  549

seq1  ATTTTAGCAATTATAAGACCTTTAAAACAAATGAACAAAATTCTTGTAAG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGCAATTATAAGACCTTTAAAACAAATGAACAAAATTCTTGTAAG  599

seq1  TACAGTTTTAAATGATGGGGAAAATAATAGAAGTGATAGTCTGTGTCCAT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTTAAATGATGGGGAAAATAATAGAAGTGATAGTCTGTGTCCAT  649

seq1  GGAGACATTATTTCTATTTAACTAAATATAGAGTATTTCTATTTAATTAA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATTATTTCTATTTAACTAAATATAGAGTATTTCTATTTAATTAA  699

seq1  AAGGTTTTAATGTATTTTCTGTGTTGCCATGCAAGGTAAAATGCACCAAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTAATGTATTTTCTGTGTTGCCATGCAAGGTAAAATGCACCAAT  749

seq1  GGCTTAAACAAAAGTACTAAAGATAAAAACATCGGTTAATTGTACATTCC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAACAAAAGTACTAAAGATAAAAACATCGGTTAATTGTACATTCC  799

seq1  CATGTATTAAATGTGACATAGTGGCAGAATTGAGCTCCTTTCTTGAGGTT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTAAATGTGACATAGTGGCAGAATTGAGCTCCTTTCTTGAGGTT  849

seq1  CCAGGGAAGAATCTCCTTTTATAGTCCTGCTGGTATGATCAGTGATAGAA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAGAATCTCCTTTTATAGTCCTGCTGGTATGATCAGTGATAGAA  899

seq1  TTCATCCCTTTGTATTGGTAGTATTGGAGCTATTAATTTACAACTGTTTA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCCTTTGTATTGGTAGTATTGGAGCTATTAATTTACAACTGTTTA  949

seq1  GAAACTGTAGGCTTTTCCTAACCTGTACAGAGTGCTCACATTTCTTAGCT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTAGGCTTTTCCTAACCTGTACAGAGTGCTCACATTTCTTAGCT  999

seq1  CCAGATCTTTCTGCATCTTCAGAGTCATCCATGAGATGGACCTTGAGAAT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTTTCTGCATCTTCAGAGTCATCCATGAGATGGACCTTGAGAAT  1049

seq1  CAATTCCTTTTCAAAATACAGTTCTTTATCCT  1063
      ||||||||||||||||||||||||||||||||
seq2  CAATTCCTTTTCAAAATACAGTTCTTTATCCT  1081


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