BAC Information

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BAC

Clone NameB6Ng01-199J18
Chromosome6 (Build37)
Map Location 17,721,407 - 17,875,301
singlet/doubletdoublet
Overlap geneSt7
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199J18.bB6Ng01-199J18.g
ACCGA020899GA020900
length3491,077
definitionB6Ng01-199J18.b B6Ng01-199J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,721,407 - 17,721,755)(17,874,225 - 17,875,301)
sequence
caacacaactatttacaagtaggacaaataatgttttgagcaatcatttc
aacacacacagaaaagtcatgtttttgcttcagaattactgcattagggc
tgaatgtatgtgtcaaggtagagcacttgggtaacatgtcagagtgtctg
gttccattcataatactgccaagaaataaaaagcattgatgtagtaattc
ataaagaattaaacagacattcaagaatgagcttttgttgagtcatcaaa
ccctggctgtaataactctggagcaccctgctgattgctagctttctact
ttctcagggctgcctggagcaatgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctaatccaagtcctctgatgtaaaacacagctgtggggctggaga
gccgtccccgaagttaaaagagtaaactcctcttccagagggcctgagtt
agttctcagcacccacactgggcagcttgttggcacaaagccctcagtac
tctagatctaggggatccaatcaattcctctggtctctgtgcagctgcac
tcatgggcattacccgtccctcccagccccatacacgtacttttaaaaga
gtaaaaagaaatcttttaaacacagaactgaatctctaatttaaatgtaa
aaaaaaaaaaaaaaaatcacagatctagaagaaaggccaaaagatttcaa
acaaatgcttgaggctggagtggtaatactttcttctaaattgcagggaa
gccttaaggctttttctttaaaaaagaaagaaagaaagaaagaaagaaag
agagaaagaaagaaagaaaagaagagaaaaaaaaggaaaagaaaagaaag
gctgaaaacatgtatcatgagaatttttttctagatatgtgtatgtgaat
gcataagcatacacacataaattcgtatacatctttgcttattgaaacca
cacatgaaaattgtgcaaaacgtgacgagtaccaatgtcaagaacacaat
ggaagctgctcgccgctcagcacagcagctgaggttaggtacgttcactt
ccgtttctttccctttttatacacatgtactgtctattttcttattatta
ttgaaatgtttaaagcaatgttagagaaatagcatgtttttaattttaac
caggatgagtcactttctaaactattgaagtactaagtgtaagacagcat
attctagcttatatgtggtgatgtaaatctaaatttttaccttccaagca
aatgcttcaaagaacaacttgtctcttcccttccatgcactcactgcaga
ggagaaatgtgggcttgctcgcctccttgactgttcttgaacaaacagca
ctcacgcactgagttagccgctcacgcactggagcccagagtcagcaacg
gcctttctgctaagctagaacatatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_17721407_17721755
seq2: B6Ng01-199J18.b_49_397

seq1  CAACACAACTATTTACAAGTAGGACAAATAATGTTTTGAGCAATCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAACTATTTACAAGTAGGACAAATAATGTTTTGAGCAATCATTTC  50

seq1  AACACACACAGAAAAGTCATGTTTTTGCTTCAGAATTACTGCATTAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACAGAAAAGTCATGTTTTTGCTTCAGAATTACTGCATTAGGGC  100

seq1  TGAATGTATGTGTCAAGGTAGAGCACTTGGGTAACATGTCAGAGTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATGTGTCAAGGTAGAGCACTTGGGTAACATGTCAGAGTGTCTG  150

seq1  GTTCCATTCATAATACTGCCAAGAAATAAAAAGCATTGATGTAGTAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTCATAATACTGCCAAGAAATAAAAAGCATTGATGTAGTAATTC  200

seq1  ATAAAGAATTAAACAGACATTCAAGAATGAGCTTTTGTTGAGTCATCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAATTAAACAGACATTCAAGAATGAGCTTTTGTTGAGTCATCAAA  250

seq1  CCCTGGCTGTAATAACTCTGGAGCACCCTGCTGATTGCTAGCTTTCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTAATAACTCTGGAGCACCCTGCTGATTGCTAGCTTTCTACT  300

seq1  TTCTCAGGGCTGCCTGGAGCAATGTGTGTGTGTGTGTGTGTGTGTGTGT  349
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGGCTGCCTGGAGCAATGTGTGTGTGTGTGTGTGTGTGTGTGT  349

seq1: chr6_17874225_17875301
seq2: B6Ng01-199J18.g_67_1143 (reverse)

seq1  GGATAATGTTCTAGCTTAGGCAGAAA-GCCGTTGCTGACTCTGGGCTCCA  49
      |||| ||||||||||||| ||||||| |||||||||||||||||||||||
seq2  GGAT-ATGTTCTAGCTTA-GCAGAAAGGCCGTTGCTGACTCTGGGCTCCA  48

seq1  GTGCGGTGAGCGGCT-ACTCAGTGCGGTGAGTGGCTGTTTGGTTCAG-AC  97
      |||| |||||||||| ||||||||| |||||| |||||||| |  || ||
seq2  GTGC-GTGAGCGGCTAACTCAGTGC-GTGAGT-GCTGTTTGTTCAAGAAC  95

seq1  AGTC-AGGAGGCGGAGCAAGCCCACATTTCTCCTCTGCAGTGAGTGCATG  146
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGAGGC-GAGCAAGCCCACATTTCTCCTCTGCAGTGAGTGCATG  144

seq1  GAAGGGAAGAGACAAGTTG-TCTTTGAAGCATTTGCTTGGAAGGTAAAAA  195
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAAGGGAAGAGACAAGTTGTTCTTTGAAGCATTTGCTTGGAAGGTAAAAA  194

seq1  TTTAGATTTACATCACCACATATAAGCTAGAATATGCTGTCTTACACTTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTACATCACCACATATAAGCTAGAATATGCTGTCTTACACTTA  244

seq1  GTACTTCAATAGTTTAGAAAGTGACTCATCCTGGTTAAAATT-AAAACAT  294
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTACTTCAATAGTTTAGAAAGTGACTCATCCTGGTTAAAATTAAAAACAT  294

seq1  GCTATTTCTCTAACATTGCTTTAAACATTTCAATAATAATAAGAAAATAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCTCTAACATTGCTTTAAACATTTCAATAATAATAAGAAAATAG  344

seq1  ACAGTACATGTGTATAAAAAGGGAAAGAAACGGAAGTGAACGTACCTAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACATGTGTATAAAAAGGGAAAGAAACGGAAGTGAACGTACCTAAC  394

seq1  CTCAGCTGCTGTGCTGAGCGGCGAGCAGCTTCCATTGTGTTCTTGACATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGCTGTGCTGAGCGGCGAGCAGCTTCCATTGTGTTCTTGACATT  444

seq1  GGTACTCGTCACGTTTTGCACAATTTTCATGTGTGGTTTCAATAAGCAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCGTCACGTTTTGCACAATTTTCATGTGTGGTTTCAATAAGCAAA  494

seq1  GATGTATACGAATTTATGTGTGTATGCTTATGCATTCACATACACATATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATACGAATTTATGTGTGTATGCTTATGCATTCACATACACATATC  544

seq1  TAGAAAAAAATTCTCATGATACATGTTTTCAGCCTTTCTTTTCTTTTCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAAATTCTCATGATACATGTTTTCAGCCTTTCTTTTCTTTTCCT  594

seq1  TTTTTTTCTCTTCTTTTCTTTCTTTCTTTCTCTCTTTCTTTCTTTCTTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCTTCTTTTCTTTCTTTCTTTCTCTCTTTCTTTCTTTCTTTC  644

seq1  TTTCTTTCTTTTTTAAAGAAAAAGCCTTAAGGCTTCCCTGCAATTTAGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTTTAAAGAAAAAGCCTTAAGGCTTCCCTGCAATTTAGAA  694

seq1  GAAAGTATTACCACTCCAGCCTCAAGCATTTGTTTGAAATCTTTTGGCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTACCACTCCAGCCTCAAGCATTTGTTTGAAATCTTTTGGCCT  744

seq1  TTCTTCTAGATCTGTGATTTTTTTTTTTTTTTTTTACATTTAAATTAGAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAGATCTGTGATTTTTTTTTTTTTTTTTTACATTTAAATTAGAG  794

seq1  ATTCAGTTCTGTGTTTAAAAGATTTCTTTTTACTCTTTTAAAAGTACGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTCTGTGTTTAAAAGATTTCTTTTTACTCTTTTAAAAGTACGTG  844

seq1  TATGGGGCTGGGAGGGACGGGTAATGCCCATGAGTGCAGCTGCACAGAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGCTGGGAGGGACGGGTAATGCCCATGAGTGCAGCTGCACAGAGA  894

seq1  CCAGAGGAATTGATTGGATCCCCTAGATCTAGAGTACTGAGGGCTTTGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAATTGATTGGATCCCCTAGATCTAGAGTACTGAGGGCTTTGTG  944

seq1  CCAACAAGCTGCCCAGTGTGGGTGCTGAGAACTAACTCAGGCCCTCTGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAGCTGCCCAGTGTGGGTGCTGAGAACTAACTCAGGCCCTCTGGA  994

seq1  AGAGGAGTTTACTCTTTTAACTTCGGGGACGGCTCTCCAGCCCCACAGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTTTACTCTTTTAACTTCGGGGACGGCTCTCCAGCCCCACAGCT  1044

seq1  GTGTTTTACATCAGAGGACTTGGATTAGAATTC  1077
      |||||||||||||||||||||||||||||||||
seq2  GTGTTTTACATCAGAGGACTTGGATTAGAATTC  1077