BAC Information

Click to search

BAC

Clone NameB6Ng01-199K05
Chromosome6 (Build37)
Map Location 78,605,644 - 78,606,761
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199K05.bB6Ng01-199K05.g
ACCGA020919GA020920
length1,1141,212
definitionB6Ng01-199K05.b B6Ng01-199K05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatcattaaatccagcctgtcttccataaagatatgtatgtttc
agacatttaaatctgctttttaaaactcagattatttttttcagttcact
gtcagttttgaaatttcccaagtttcaagctctatggcaggtgagtggct
agagaacaagagcttggagattaattaggaggtttgtgcattttaaattt
ccccattgtttcctatatatatctccgtgcttgtgtatgggtaactgtcc
ttggagaaatgggaagaaaaattattaaaatagaaaaacattttatgttt
ttatgtttatcattcatatttacttggagaccaaatatgaaaagttttaa
tggcaaagaacttcccagaaagtttttatgagccagaggaacagggatat
gaaattgagttgtaaccttacccataaagttgactgtggcaaattctatt
atactgaaattctgttatatctggttttatttccacattccgtgttgtat
attaatacctacctacctttctcattgtgcttatctcttaatgggaaata
gtttctgaatatccttgcagttaatagcaagcacatatagaaaaatcttc
ctttcccctggtgatgtgataaaattagctttgttatcattagttggctc
atttagagaaccttggagtgctaggtgattgtggtacttggcagatatca
gctttgaatcttccttttctgagttgtgtaggcagaatttcaattgtatg
ggcttcttatttgagaaatgtttcacttcctggaacatttaaatagtaat
ttaatgctattccagtgatggaggccacctggaaatcagctcattttgtg
ctgtgttaaatggtggctgctgctgttgctttgtggagtggatggggtaa
atgctatgagactgctctataaaacccgagttgaggaaaggaagtgcctt
gtcctttctttcactcatctttttttttctctgatctatctatgaaaatg
tacttgggattccttacagcatgaaaattttatatcagtggttggctctt
tttattaattattttgggaaaaatatatttttaaatacaggcacatctgc
cttagggttcccta
gaattcaacagagtgcacatagtgtagaactctgacctccatacacagac
acacagaggagtgaaactatatatacacatgctcacatgtgtgttcactc
acatacacacaaaatatatacatatatgtgtatatataaagcaatatata
atatataatataatagtgtacatatatacttatataatatactctatact
ataaattatatagtattttttacctgaattcaagataatataaagctaat
gttctattggtacaagaaataaaaataaaccaaatgtgtaagttctagaa
agcagaaaagtaatcaatggtgttaataatttggacaaaattcccaaagg
tataacacacagaaattatagttgtcactgttgctaaaaaagtaaacaaa
actgggtatatttttaaagattgcataaggagatttattttttataagat
ttatgatttattccagtgtgtgagaaatttttttgtttggatgcatggct
ataaaccctctccacacctgatacatgaggaatcagtgaaagtttttgga
tccgctgccataggggttaacagtgtgatctttagttttaatgctggaac
ttgaacccaagtcatctgtaagaacaggaagtgttcttaaacactgagcc
aggtctccagcacatacatcctttttaaatcctgtatggccatgcaaaga
atgaacggacatggttcccacccctggaacagagccagcatggtgtagac
ctacaagagtgtggaggtaaggcttgtttttacaataattcatatatttt
tattttcctctttctaggaatgctctttctgccaaggttaatgactccat
ggtaatcagagacagcaggagtctggaaagcaaagggtgtatctaaggtc
tcagcaaaatgataaatgctgagaccttcaggacaaacctaaaggctgtg
gaaaagaacccaagaaaatcatgagtttcaagaatattataattttcttc
aacttataagaaaaatataggatgcaattatgaattgttataaagaattt
catgactttaaagaaacagaaggccatttgtaccatgagcagcttttttc
ttttttttatttagaatatttttcttcatttacaatttcaattgctatgt
gcaagttccctattacacccctgacctccacccctggtctcttcaacttc
aaccaaatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78605644_78606761
seq2: B6Ng01-199K05.b_41_1154

seq1  GAATTCTATCATTAAATCCAGCCTGTCTTCCATAAAGATATGTATGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCATTAAATCCAGCCTGTCTTCCATAAAGATATGTATGTTTC  50

seq1  AGACATTTAAATCTGCTTTTTAAAACTCAGATTATTTTTTTCAGTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTAAATCTGCTTTTTAAAACTCAGATTATTTTTTTCAGTTCACT  100

seq1  GTCAGTTTTGAAATTTCCCAAGTTTCAAGCTCTATGGCAGGTGAGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTTGAAATTTCCCAAGTTTCAAGCTCTATGGCAGGTGAGTGGCT  150

seq1  AGAGAACAAGAGCTTGGAGATTAATTAGGAGGTTTGTGCATTTTAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAGAGCTTGGAGATTAATTAGGAGGTTTGTGCATTTTAAATTT  200

seq1  CCCCATTGTTTCCTATATATATCTCCGTGCTTGTGTATGGGTAACTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGTTTCCTATATATATCTCCGTGCTTGTGTATGGGTAACTGTCC  250

seq1  TTGGAGAAATGGGAAGAAAAATTATTAAAATAGAAAAACATTTTATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAATGGGAAGAAAAATTATTAAAATAGAAAAACATTTTATGTTT  300

seq1  TTATGTTTATCATTCATATTTACTTGGAGACCAAATATGAAAAGTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTATCATTCATATTTACTTGGAGACCAAATATGAAAAGTTTTAA  350

seq1  TGGCAAAGAACTTCCCAGAAAGTTTTTATGAGCCAGAGGAACAGGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGAACTTCCCAGAAAGTTTTTATGAGCCAGAGGAACAGGGATAT  400

seq1  GAAATTGAGTTGTAACCTTACCCATAAAGTTGACTGTGGCAAATTCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAGTTGTAACCTTACCCATAAAGTTGACTGTGGCAAATTCTATT  450

seq1  ATACTGAAATTCTGTTATATCTGGTTTTATTTCCACATTCCGTGTTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAATTCTGTTATATCTGGTTTTATTTCCACATTCCGTGTTGTAT  500

seq1  ATTAATACCTACCTACCTTTCTCATTGTGCTTATCTCTTAATGGGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATACCTACCTACCTTTCTCATTGTGCTTATCTCTTAATGGGAAATA  550

seq1  GTTTCTGAATATCCTTGCAGTTAATAGCAAGCACATATAGAAAAATCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAATATCCTTGCAGTTAATAGCAAGCACATATAGAAAAATCTTC  600

seq1  CTTTCCCCTGGTGATGTGATAAAATTAGCTTTGTTATCATTAGTTGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCTGGTGATGTGATAAAATTAGCTTTGTTATCATTAGTTGGCTC  650

seq1  ATTTAGAGAACCTTGGAGTGCTAGGTGATTGTGGTACTTGGCAGATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGAACCTTGGAGTGCTAGGTGATTGTGGTACTTGGCAGATATCA  700

seq1  GCTTTGAATCTTCCTTTTCTGAGTTGTGTAGGCAGAATTTCAATTGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAATCTTCCTTTTCTGAGTTGTGTAGGCAGAATTTCAATTGTATG  750

seq1  GGCTTCTTATTTGAGAAATGTTTCACTTCCTGGAACATTTAAATAGTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTATTTGAGAAATGTTTCACTTCCTGGAACATTTAAATAGTAAT  800

seq1  TTAATGCTATTCCAGTGATGGAGGCCACCTGGAAATCAGGCTCATTTTGT  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTAATGCTATTCCAGTGATGGAGGCCACCTGGAAATCA-GCTCATTTTGT  849

seq1  GCTGTGTTAAATGGTGGCTGCTGCTGTTGCTTTGTGGAGTGGATGGGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTAAATGGTGGCTGCTGCTGTTGCTTTGTGGAGTGGATGGGGTA  899

seq1  AATGCTATGAGACTGCTCTATAAAACCCGAGTTGAGG-AAGGAAGTGCCT  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATGCTATGAGACTGCTCTATAAAACCCGAGTTGAGGAAAGGAAGTGCCT  949

seq1  TGTTCCTTTCTTTCACTCATCTTTTTTTTTCTCTGATCTTATTCTAATGA  999
      || ||||||||||||||||||||||||||||||||||||   ||| ||||
seq2  TG-TCCTTTCTTTCACTCATCTTTTTTTTTCTCTGATCT--ATCT-ATGA  995

seq1  AAATGTACTTGGATTTCTTAACAGCATGAAAAATTTTATATCAGT-GTTT  1048
      ||||||||||||  ||| | |||||||| |||||||||||||||| ||| 
seq2  AAATGTACTTGGGATTCCTTACAGCATG-AAAATTTTATATCAGTGGTTG  1044

seq1  GCTCTTTTTATTTAATTTATTTTGG--AAAATATATTTTTTAATACA-GC  1095
      ||||||||||||  | |||||||||  ||||||||||||| |||||| ||
seq2  GCTCTTTTTATT--AATTATTTTGGGAAAAATATATTTTTAAATACAGGC  1092

seq1  ACATTCTGCTTATGGTTTCCCTA  1118
      ||| ||||| |  || |||||||
seq2  ACA-TCTGCCTTAGGGTTCCCTA  1114