BAC Information

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BAC

Clone NameB6Ng01-199K14
Chromosome6 (Build37)
Map Location 28,620,918 - 28,751,266
singlet/doubletdoublet
Overlap geneSnd1
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350
Downstream geneLrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199K14.bB6Ng01-199K14.g
ACCGA020937GA020938
length1,187613
definitionB6Ng01-199K14.b B6Ng01-199K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,750,106 - 28,751,266)(28,620,918 - 28,621,529)
sequence
gaattcccaggactgagccattctcagcactgtgtgctacccttctcctc
caatgactctccttggcagggagtaggctgcatgaacagatggaccagga
ggctgagagaacacattacacagcgctggaggagcactatggggcgaagc
cagagggtgcagaaaagacctggttacaccaaccctcatccccctctcac
acaagagggactataacatgaaacctaagtgaagaagatgggcccatttt
tctttcaatgctaggctttctttcctatgtatattccattccttctcaga
tagacctagtcatcaggttccttcaaacaggcattcctccccccacccca
cagttgtaacagttgcttataatactttatagtcttttcctttgaaaaaa
actaggagttgggggtcagaggaaaactagggctatgtcagggttactga
agctgcagaatgggttctggaggggaaatcttcctttctgatgccagcag
caagagggaaataggtcagggcagagtgttcagctagagctgtccagcat
gggggtgtcattatccaggcatcatcaaggaacaactttgaagtctagag
aggataaaggggtcatcaaaaaaacactgggaaggattaccaagcccctg
tagactctccctccaaagctatatccgagacagcttgaaactaggagaga
gttaaattataaaggcaggagaagcatgagctgcaaatctgcctggggta
cattgcaagactgcctcaagtaaacctgtttgacaccgagcttttattaa
tatagctcctcctttgtaggttcaggtttctccaacacagcaacaactgg
agtgccggcatatagtgacaggtttggttgagtattatgctggctagctg
gcctttctgggaagatgatgttcaaaaagagcacagatgtctttgtactc
atgacaaagatctcaaatggactctttgattggaatggattgctaggatc
catcctttttaagacgaaattaccaaggctaggcagaaaaaattcgtatt
cctcagtataccacattgattactgggctggtggagacccagagctttga
tcctttaaagcagtttatctaaccatttagctatttctattctctaagta
ctttacttcttgtcagagtctggcacaagtgcaattc
gaattctttgttaactgtaattcagtgaaggtctctttatgaagcagacg
taggtgtgtttgaatgtttcattcctggatgatacagtttggtagttggt
tggttggttggttggtggtcgggagaacacatgtagagatcagaggacaa
cttcaggagtctgttctccttcatcttggattttggagatcaaatccagg
tcttcaggcttgccaaggaaagggttttaggctaaaccatctctccaccc
actttgggtttgtttctatgtacccagaagtaggatctaaaagtttccct
cctttccttgttctagaagcttggtgataaaggtaggttttccctagcag
gtggacctccaggcttgctttctgcatcctacaggaagggcttggtttgt
tcttcatcttagtttgtgtttacttttctccttttacccctgaattttct
ttaaatagacctcaaataatattgtagaaaaattgagtcattaataaaat
ccaagcatttagcttatattcagaaataatctgtattaagaaccctttat
ctggttaatgcttacttattttaaaccactgtggagagaggaggattttg
ccgacgcaaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28750106_28751266
seq2: B6Ng01-199K14.b_47_1233 (reverse)

seq1  GAATTGCACTTGTTGCTAGCATCTTCCCAGAAGT--AGTGATGAGAG-AT  47
      |||||||||||| ||| ||  |||  | ||||||  |||  | |||| ||
seq2  GAATTGCACTTG-TGCCAGACTCTGACAAGAAGTAAAGTACTTAGAGAAT  49

seq1  AGAATTAGCT-AATGGGTAGAT-AACTGGCTTAAAAGTACAAA-CTCCTG  94
      |||| ||||| ||||| ||||| |||||  ||||| |  |||| |||  |
seq2  AGAAATAGCTAAATGGTTAGATAAACTGCTTTAAAGGATCAAAGCTCTGG  99

seq1  GTCTTCAC--ACCCAGTTATC-ATGTGG--TACTGA-GAATACAATTTTT  138
      |||| |||   |||||| ||| ||||||  |||||| |||||| | ||||
seq2  GTCTCCACCAGCCCAGTAATCAATGTGGTATACTGAGGAATACGAATTTT  149

seq1  TTCTGCCTTGCCTTGGTATTTCTGTCT---AAAAGATTGAT-CTAGCAAT  184
      |||||||| ||||||||| ||  ||||   ||| ||| ||| ||||||||
seq2  TTCTGCCTAGCCTTGGTAATTTCGTCTTAAAAAGGATGGATCCTAGCAAT  199

seq1  CCAT--CCATCAAAGAGT-CATTTGAGATCTTTGTCATGAGTAC-AAGAC  230
      ||||  | |||||||||| ||||||||||||||||||||||||| |||||
seq2  CCATTCCAATCAAAGAGTCCATTTGAGATCTTTGTCATGAGTACAAAGAC  249

seq1  ATCTGTGCTCTTTT--GACATCATCTT-CCAG-AAGGCCAGCTAGCCAGC  276
      ||||||||||||||   |||||||||| |||| |||||||||||||||||
seq2  ATCTGTGCTCTTTTTGAACATCATCTTCCCAGAAAGGCCAGCTAGCCAGC  299

seq1  AT-ATACTCA--CCAACCTGTCACTATATGCCGGCACTCCAGTTGTTGCT  323
      || |||||||  | ||||||||||||||||||||||||||||||||||||
seq2  ATAATACTCAACCAAACCTGTCACTATATGCCGGCACTCCAGTTGTTGCT  349

seq1  GTGTTGGAGAAACCTGAACCTACAAAGGAGGAGCTATATTAATAAAAGCT  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGAGAAACCTGAACCTACAAAGGAGGAGCTATATTAATAAAAGCT  399

seq1  CGGTGTCAAACAGGTTTACTTGAGGCAGTCTTGCAATGTACCCCAGGCAG  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTCAAACAGGTTTACTTGAGGCAGTCTTGCAATGTACCCCAGGCAG  449

seq1  ATTTGCAGCTCATGCTTCTCCTGCCTTTATAATTTAACTCTCTCCTAGTT  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGCTCATGCTTCTCCTGCCTTTATAATTTAACTCTCTCCTAGTT  499

seq1  TCAAGCTGTCTCGGATATAGCTTTGGAGGGAGAGTCTACAGGGGCTTGGT  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGTCTCGGATATAGCTTTGGAGGGAGAGTCTACAGGGGCTTGGT  549

seq1  AATCCTTCCCAGTGTTTTTTTGATGACCCCTTTATCCTCTCTAGACTTCA  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCCCAGTGTTTTTTTGATGACCCCTTTATCCTCTCTAGACTTCA  599

seq1  AAGTTGTTCCTTGATGATGCCTGGATAATGACACCCCCATGCTGGACAGC  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTCCTTGATGATGCCTGGATAATGACACCCCCATGCTGGACAGC  649

seq1  TCTAGCTGAACACTCTGCCCTGACCTATTTCCCTCTTGCTGCTGGCATCA  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGAACACTCTGCCCTGACCTATTTCCCTCTTGCTGCTGGCATCA  699

seq1  GAAAGGAAGATTTCCCCTCCAGAACCCATTCTGCAGCTTCAGTAACCCTG  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGATTTCCCCTCCAGAACCCATTCTGCAGCTTCAGTAACCCTG  749

seq1  ACATAGCCCTAGTTTTCCTCTGACCCCCAACTCCTAGTTTTTTTCAAAGG  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCCCTAGTTTTCCTCTGACCCCCAACTCCTAGTTTTTTTCAAAGG  799

seq1  AAAAGACTATAAAGTATTATAAGCAACTGTTACAACTGTGGGGTGGGGGG  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTATAAAGTATTATAAGCAACTGTTACAACTGTGGGGTGGGGGG  849

seq1  AGGAATGCCTGTTTGAAGGAACCTGATGACTAGGTCTATCTGAGAAGGAA  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCCTGTTTGAAGGAACCTGATGACTAGGTCTATCTGAGAAGGAA  899

seq1  TGGAATATACATAGGAAAGAAAGCCTAGCATTGAAAGAAAAATGGGCCCA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATACATAGGAAAGAAAGCCTAGCATTGAAAGAAAAATGGGCCCA  949

seq1  TCTTCTTCACTTAGGTTTCATGTTATAGTCCCTCTTGTGTGAGAGGGGGA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCACTTAGGTTTCATGTTATAGTCCCTCTTGTGTGAGAGGGGGA  999

seq1  TGAGGGTTGGTGTAACCAGGTCTTTTCTGCACCCTCTGGCTTCGCCCCAT  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTGGTGTAACCAGGTCTTTTCTGCACCCTCTGGCTTCGCCCCAT  1049

seq1  AGTGCTCCTCCAGCGCTGTGTAATGTGTTCTCTCAGCCTCCTGGTCCATC  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCTCCAGCGCTGTGTAATGTGTTCTCTCAGCCTCCTGGTCCATC  1099

seq1  TGTTCATGCAGCCTACTCCCTGCCAAGGAGAGTCATTGGAGGAGAAGGGT  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGCAGCCTACTCCCTGCCAAGGAGAGTCATTGGAGGAGAAGGGT  1149

seq1  AGCACACAGTGCTGAGAATGGCTCAGTCCTGGGAATTC  1161
      ||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGTGCTGAGAATGGCTCAGTCCTGGGAATTC  1187

seq1: chr6_28620918_28621529
seq2: B6Ng01-199K14.g_68_680

seq1  GAATTCTTTGTTAACTGTAATTCAGTGAAGGTCTCTTTATGAAGCAGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTAACTGTAATTCAGTGAAGGTCTCTTTATGAAGCAGACG  50

seq1  TAGGTGTGTTTGAATGTTTCATTCCTGGATGATACAGTTTGGTAGTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGTTTGAATGTTTCATTCCTGGATGATACAGTTTGGTAGTTGGT  100

seq1  TGGTTGGTTGGTTGGTGGTCGGGAGAACACATGTAGAGATCAGAGGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTGGTTGGTGGTCGGGAGAACACATGTAGAGATCAGAGGACAA  150

seq1  CTTCAGGAGTCTGTTCTCCTTCATCTTGGATTTTGGAGATCAAATCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAGTCTGTTCTCCTTCATCTTGGATTTTGGAGATCAAATCCAGG  200

seq1  TCTTCAGGCTTGCCAAGGAAAGGGTTTTAGGCTAAACCATCTCTCCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGCTTGCCAAGGAAAGGGTTTTAGGCTAAACCATCTCTCCACCC  250

seq1  ACTTTGGGTTTGTTTCTATGTACCCAGAAGTAGGATCTAAAAGTTTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGTTTGTTTCTATGTACCCAGAAGTAGGATCTAAAAGTTTCCCT  300

seq1  CCTTTCCTTGTTCTAGAAGCTTGGTGATAAAGGTAGGTTTTCCCTAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTGTTCTAGAAGCTTGGTGATAAAGGTAGGTTTTCCCTAGCAG  350

seq1  GTGGACCTCCAGGCTTGCTTTCTGCATCCTACAGGAAGGGCTTGGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCTCCAGGCTTGCTTTCTGCATCCTACAGGAAGGGCTTGGTTTGT  400

seq1  TCTTCATCTTAGTTTGTGTTTACTTTTCTCCTTTTACCCCTGAATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCTTAGTTTGTGTTTACTTTTCTCCTTTTACCCCTGAATTTTCT  450

seq1  TTAAATAGACCTCAAATAATATTGTAG-AAAATTGAGTCATTAATAAAAT  499
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAAATAGACCTCAAATAATATTGTAGAAAAATTGAGTCATTAATAAAAT  500

seq1  CCAAGCATTTAGCTTATATTCAGAAATAATCTGTATTAAGAACCCTTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATTTAGCTTATATTCAGAAATAATCTGTATTAAGAACCCTTTAT  550

seq1  CTGGTTAATGCTTACTTATTTTAAACCACTGTGGAGAGAGGAGGATTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAATGCTTACTTATTTTAAACCACTGTGGAGAGAGGAGGATTTTG  600

seq1  CCGACGCAAAGAT  612
      |||||||||||||
seq2  CCGACGCAAAGAT  613