BAC Information

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BAC

Clone NameB6Ng01-199O05
Chromosome6 (Build37)
Map Location 34,269,128 - 34,462,779
singlet/doubletdoublet
Overlap geneAkr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3
Downstream geneLOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199O05.bB6Ng01-199O05.g
ACCGA021101GA021102
length565375
definitionB6Ng01-199O05.b B6Ng01-199O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,462,201 - 34,462,779)(34,269,128 - 34,269,508)
sequence
tttgttttttgggtttgtttttgttttttgttttttcgagacagggtttc
tctgtgtagccttggctgtcctggaactcactttgtagacctcgaactca
gaaatctgcttgcctctgcctcccaagtgctgggattaaaggcgtgtgcc
accacgccggctttttttttttttttttttttaatcctgggaattctaag
ggcgctctctctctctctctctctctctctctctctctctctctctctct
ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacacccacaaaactttat
aatccagacattgattcatttccttcctttgctttttatctttatagtca
tgcaagcaaccaagtgcgcttctgagcccccccccccgggctgcctaact
ttgtgtagtttaaaaggaagaatgcttttttgtttttcgttggattcaaa
gggacatttaaaataattactatgctccacattatgccccctatagttct
caccctttcatttggtctgtttatcttcattacaaaggaaaatttattgg
tttttgccaatcagt
tcctatcaatcatggcactaaagatgagacactgttacaatagtctcctg
gtaactcctgttgttgcctccataatctttataaaatttattgggcatgt
atcatatccttctttaaagaagaataaagtaggctggagagatagctcag
cggttaagagcactgcctgctcttccaaaggtcctgagttcaaaatccca
gcaaccacgtggtggcttacaattgtccgtaatgagatctgataccctct
tctgagatgtctaaagacagctacagtgtacttacatataaataaatcta
aaaagaagaagaagaagaagaggaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34462201_34462779
seq2: B6Ng01-199O05.b_45_615 (reverse)

seq1  ACTGATTAGGCAAAAAACCAAACAATTTTCCATTTGTAATGAAGATAAAC  50
      ||||||| ||| |||||||||  |||||||| ||||||||||||||||||
seq2  ACTGATT-GGC-AAAAACCAATAAATTTTCC-TTTGTAATGAAGATAAAC  47

seq1  AGACCAAATGATGTGGGTGAGAAACTTTTGTGAATGCAAAATATTGATGC  100
      |||||||||||   ||||||| |||| | | |   ||| ||| | || ||
seq2  AGACCAAATGA-AAGGGTGAG-AACTATAGGG--GGCATAATGTGGA-GC  92

seq1  ATAGTAATTATTTTAAATGTTGCTAGGAATCTTGCGCTATACAAGAAAGC  150
      ||||||||||||||||||||  ||  |||||   ||  | |||| |||||
seq2  ATAGTAATTATTTTAAATGTCCCTTTGAATCCAACGAAAAACAAAAAAGC  142

seq1  ATTATTCCTTTAAAACTCTAAAAAGTTAGGCAGCCCCGTGGTTCGCTCTC  200
      ||| ||||||| |||||  | ||||||||||||||| | ||   |  |||
seq2  ATTCTTCCTTTTAAACTACACAAAGTTAGGCAGCCCGGGGGGGGGGGCTC  192

seq1  AGAAGCTCACTTGTTTGCTTGCTTGTCTCTTTGGCTGGCTGGCAAGGGAA  250
      |||||| |||||| |||||||| || || |   | |     |||| ||||
seq2  AGAAGCGCACTTGGTTGCTTGCATGACTATAAAGATAAAAAGCAAAGGAA  242

seq1  GTGAATGAATCCATGTCTGGATTCAAAAGTTTCGAGAGTGTGTACACACA  300
      |  |||||||| |||||||||||  ||||||| | | |||||||||||||
seq2  GGAAATGAATCAATGTCTGGATTATAAAGTTTTGTGGGTGTGTACACACA  292

seq1  CACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  342

seq1  GAGAGAGAGAGAGAGAGAGCGCCCTTAGAATTCCCAGGATTAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGCGCCCTTAGAATTCCCAGGATTAAAAAAAAA  392

seq1  AAAAAAAAAAAAGCCGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGCCGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTG  442

seq1  GGAGGCAGAGGCAAGCAGATTTCTGAGTTCGAGGTCTACAAAGTGAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAAGCAGATTTCTGAGTTCGAGGTCTACAAAGTGAGTTC  492

seq1  CAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAAAA  542

seq1  CAAAAACAAACCCAAAAAACAAAGAATTC  579
      |||||||||||||||||||||||||||||
seq2  CAAAAACAAACCCAAAAAACAAAGAATTC  571

seq1: chr6_34269128_34269508
seq2: B6Ng01-199O05.g_66_446

seq1  GAATTCTCCTATCAATCATGGCACTAAAGATGAGACACTGTTACAATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATCAATCATGGCACTAAAGATGAGACACTGTTACAATAGT  50

seq1  CTCCTGGTAACTCCTGTTGTTGCCTCCATAATCTTTATAAAATTTATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTAACTCCTGTTGTTGCCTCCATAATCTTTATAAAATTTATTGG  100

seq1  GCATGTATCATATCCTTCTTTAAAGAAGAATAAAGTAGGCTGGAGAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATCATATCCTTCTTTAAAGAAGAATAAAGTAGGCTGGAGAGATA  150

seq1  GCTCAGCGGTTAAGAGCACTGCCTGCTCTTCCAAAGGTCCTGAGTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCGGTTAAGAGCACTGCCTGCTCTTCCAAAGGTCCTGAGTTCAAA  200

seq1  ATCCCAGCAACCACGTGGTGGCTTACAATTGTCCGTAATGAGATCTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCAACCACGTGGTGGCTTACAATTGTCCGTAATGAGATCTGATA  250

seq1  CCCTCTTCTGAGATGTCTAAAGACAGCTACAGTGTACTTACATATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGAGATGTCTAAAGACAGCTACAGTGTACTTACATATAAATA  300

seq1  AATCTAAAAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAG  350

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  381
      |||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  381