BAC Information

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BAC

Clone NameB6Ng01-200B17
Chromosome6 (Build37)
Map Location 96,103,712 - 96,213,897
singlet/doubletdoublet
Overlap geneC630007B19Rik, 1700123L14Rik
Upstream geneLOC435912, Suclg2, LOC665886, LOC545867, LOC100043685
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200B17.bB6Ng01-200B17.g
ACCGA021259GA021260
length8531,055
definitionB6Ng01-200B17.b B6Ng01-200B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,213,049 - 96,213,897)(96,103,712 - 96,104,761)
sequence
gaattcaaagccagtctagactggatgaggctctggttttttggttgttt
cccattgctttgcttttggtgcgtgtgggagggttctttttcttgtttta
ctgtcattgcttttaaaatattaacaagaaaaaagaaatctggggtattc
tcatctcagtagactaacaaaaccttgtccttggcaaataaaagctttgc
aaacacatttgacccccctgtgtggtctcgaagctctgaacacattagct
gtcagcaggttgcttgtgctatggtctgccatgactctacctgtgtttcc
ctttcttccatctgccttagctactttccttcacaccattttcagtgttg
ttgataagtccacagtgagattggaatttgtacctgacccatgcagtaag
aatgaacagttccctcttctgttctttgtgtccactttgccatgaaaata
tttcctcattcctattattgttgtatttaattacttaaactcaagtttcc
aaataatttttgagtatgtgttattagcgaggctctgtagttcaccctag
gaacatagaactggacaaaacaaagctccttacattctacctaaccttat
tttgtattgtctaccttttcttggaggcaaaagggcaggtctaataatat
atatgtgtgtatatatatatatatatatatatatatatatatatacacac
atatattcaaatgctcctttctgacaactttatgggcacttgaaaagttt
agtagatgtgtagttgttggtataaagaagtctttaaagaaaatctttac
aaaaacataatatttttgcataatgggacttcaaacatttgaaagtaaag
acc

gaattctccattctcctgctttagcatcccaaggattacagacaaatgtc
atcaggctcagcttttgtttatagaaaaataagaattatttatggtaaca
ggaggtctcggtgaaccagcctctggtcactttcctgattttcctgccta
ttattcttctcttgcaaacttcattccagccttgacctttcaaaatgtag
acatactctctgtagaaaagtcctacttgcttacattgaggtactgttta
tcagtagagggaggaagaaaacgtggaatgttaaagtggaccaaatttca
aatcacagactagcagccatttattattagatactaggaaaaatgaaaaa
ggttttctagccctctcttctccatttctaaaattgggaaaaaaatactg
ttgtagcaaagttctgtgattgggcttgatgtataattactcccttacac
agggagtgattattgctgtcagtgatcatattaatcagaaactgtcatgt
aattatatacacacacacacactttcagggaaaagaacatttttatactt
tttatgccaatcctttatagattgataaggatagttctgctgaccttggc
cagccaacttatgcaagaaggcttcacttatgtaagccttcactctcaat
ggttctgctttgaatagtgggtccagaaagccagaactattccacatgtc
tggttcaggttgatgaacaagagacagaagaaagctcttgccatttccta
ggcagaggaccaaaagcaaaaatgagacatcttaaggactgagggtcaga
actggcacctcaccccttgtgtgcataatccattgtctaaacaaagtcac
atgcatgagccaagccaagacatcagatactgtgcacttttgttaagatg
aatgaccaagttatctgcaaaagataagacaaaaagattgaaaggaccca
ggttgctaaatttacctgtacctaaaaatacattattagacattatattg
catggtggagtaaaccatgctcctttttccacatattcctccattatatg
gtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_96213049_96213897
seq2: B6Ng01-200B17.b_48_900 (reverse)

seq1  GGTCTTCACTTTCAAACTGTTTCAAGT-CCATTATGC-AAAATATTATGT  48
      |||||| ||||||||| ||||| |||| ||||||||| ||||||||||||
seq2  GGTCTTTACTTTCAAA-TGTTTGAAGTCCCATTATGCAAAAATATTATGT  49

seq1  TTATGTTAAGATGTTCTTTAAAGACTTCTTTAT-CCAACAACTACACATC  97
      || ||| ||||| |||||||||||||||||||| ||||||||||||||||
seq2  TTTTGTAAAGATTTTCTTTAAAGACTTCTTTATACCAACAACTACACATC  99

seq1  TACTAAACTTTTCAAGTG-CCAT-AAGTTGTCAGAATGTAGCATTTGAAT  145
      |||||||||||||||||| |||| |||||||||||| | |||||||||||
seq2  TACTAAACTTTTCAAGTGCCCATAAAGTTGTCAGAAAGGAGCATTTGAAT  149

seq1  ATATGTGTGTATATATATATATATATATATATATATATATATATACACAC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGTATATATATATATATATATATATATATATATATATACACAC  199

seq1  ATATATATTATTAGACCTGCCCTTTTGCCTCCAAGAAAAGGTAGACAATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTATTAGACCTGCCCTTTTGCCTCCAAGAAAAGGTAGACAATA  249

seq1  CAAAATAAGGTTAGGTAGAATGTAAGGAGCTTTGTTTTGTCCAGTTCTAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAGGTTAGGTAGAATGTAAGGAGCTTTGTTTTGTCCAGTTCTAT  299

seq1  GTTCCTAGGGTGAACTACAGAGCCTCGCTAATAACACATACTCAAAAATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAGGGTGAACTACAGAGCCTCGCTAATAACACATACTCAAAAATT  349

seq1  ATTTGGAAACTTGAGTTTAAGTAATTAAATACAACAATAATAGGAATGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAACTTGAGTTTAAGTAATTAAATACAACAATAATAGGAATGAG  399

seq1  GAAATATTTTCATGGCAAAGTGGACACAAAGAACAGAAGAGGGAACTGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTTCATGGCAAAGTGGACACAAAGAACAGAAGAGGGAACTGTT  449

seq1  CATTCTTACTGCATGGGTCAGGTACAAATTCCAATCTCACTGTGGACTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTACTGCATGGGTCAGGTACAAATTCCAATCTCACTGTGGACTTA  499

seq1  TCAACAACACTGAAAATGGTGTGAAGGAAAGTAGCTAAGGCAGATGGAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACACTGAAAATGGTGTGAAGGAAAGTAGCTAAGGCAGATGGAAG  549

seq1  AAAGGGAAACACAGGTAGAGTCATGGCAGACCATAGCACAAGCAACCTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAACACAGGTAGAGTCATGGCAGACCATAGCACAAGCAACCTGC  599

seq1  TGACAGCTAATGTGTTCAGAGCTTCGAGACCACACAGGGGGGTCAAATGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTAATGTGTTCAGAGCTTCGAGACCACACAGGGGGGTCAAATGT  649

seq1  GTTTGCAAAGCTTTTATTTGCCAAGGACAAGGTTTTGTTAGTCTACTGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAAAGCTTTTATTTGCCAAGGACAAGGTTTTGTTAGTCTACTGAG  699

seq1  ATGAGAATACCCCAGATTTCTTTTTTCTTGTTAATATTTTAAAAGCAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATACCCCAGATTTCTTTTTTCTTGTTAATATTTTAAAAGCAATG  749

seq1  ACAGTAAAACAAGAAAAAGAACCCTCCCACACGCACCAAAAGCAAAGCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAACAAGAAAAAGAACCCTCCCACACGCACCAAAAGCAAAGCAA  799

seq1  TGGGAAACAACCAAAAAACCAGAGCCTCATCCAGTCTAGACTGGCTTTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACAACCAAAAAACCAGAGCCTCATCCAGTCTAGACTGGCTTTGA  849

seq1  ATTC  849
      ||||
seq2  ATTC  853


seq1: chr6_96103712_96104761
seq2: B6Ng01-200B17.g_70_1124

seq1  GAATTCTCCATTCTCCTGCTTTAGCATCCCAAGGATTACAGACAAATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCTCCTGCTTTAGCATCCCAAGGATTACAGACAAATGTC  50

seq1  ATCAGGCTCAGCTTTTGTTTATAGAAAAATAAGAATTATTTATGGTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTCAGCTTTTGTTTATAGAAAAATAAGAATTATTTATGGTAACA  100

seq1  GGAGGTCTCGGTGAACCAGCCTCTGGTCACTTTCCTGATTTTCCTGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTCGGTGAACCAGCCTCTGGTCACTTTCCTGATTTTCCTGCCTA  150

seq1  TTATTCTTCTCTTGCAAACTTCATTCCAGCCTTGACCTTTCAAAATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTCTCTTGCAAACTTCATTCCAGCCTTGACCTTTCAAAATGTAG  200

seq1  ACATACTCTCTGTAGAAAAGTCCTACTTGCTTACATTGAGGTACTGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCTCTGTAGAAAAGTCCTACTTGCTTACATTGAGGTACTGTTTA  250

seq1  TCAGTAGAGGGAGGAAGAAAACGTGGAATGTTAAAGTGGACCAAATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAGGGAGGAAGAAAACGTGGAATGTTAAAGTGGACCAAATTTCA  300

seq1  AATCACAGACTAGCAGCCATTTATTATTAGATACTAGGAAAAATGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGACTAGCAGCCATTTATTATTAGATACTAGGAAAAATGAAAAA  350

seq1  GGTTTTCTAGCCCTCTCTTCTCCATTTCTAAAATTGGGAAAAAAATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTAGCCCTCTCTTCTCCATTTCTAAAATTGGGAAAAAAATACTG  400

seq1  TTGTAGCAAAGTTCTGTGATTGGGCTTGATGTATAATTACTCCCTTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCAAAGTTCTGTGATTGGGCTTGATGTATAATTACTCCCTTACAC  450

seq1  AGGGAGTGATTATTGCTGTCAGTGATCATATTAATCAGAAACTGTCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGATTATTGCTGTCAGTGATCATATTAATCAGAAACTGTCATGT  500

seq1  AATTATATACACACACACACACTTTCAGGGAAAAGAACATTTTTATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATACACACACACACACTTTCAGGGAAAAGAACATTTTTATACTT  550

seq1  TTTATGCCAATCCTTTATAGATTGATAAGGATAGTTCTGCTGACCTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCAATCCTTTATAGATTGATAAGGATAGTTCTGCTGACCTTGGC  600

seq1  CAGCCAACTTATGCAAGAAGGCTTCACTTATGTAAGCCTTCACTCTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAACTTATGCAAGAAGGCTTCACTTATGTAAGCCTTCACTCTCAAT  650

seq1  GGTTCTGCTTTGAATAGTGGGTCCAGAAAGCCAGAACTATTCCACATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGCTTTGAATAGTGGGTCCAGAAAGCCAGAACTATTCCACATGTC  700

seq1  TGGTTCAGGTTGATGAACAAGAGACAGAAGAAAGCTCTTGCCATTTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGGTTGATGAACAAGAGACAGAAGAAAGCTCTTGCCATTTCCTA  750

seq1  GGCAGAGGACCAAAAGCAAAAATGAGACATCTTAAGGACTGAGGGTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGACCAAAAGCAAAAATGAGACATCTTAAGGACTGAGGGTCAGA  800

seq1  ACTGGCACCTCACCCCTTGTGTGCATAATCCATTGTCTAAACAAAGTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCACCTCACCCCTTGTGTGCATAATCCATTGTCTAAACAAAGTCAC  850

seq1  ATGCATGAGCCAAGCCAAGACATCAGATACTGTGCACTTTTGTT-AGATG  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGCATGAGCCAAGCCAAGACATCAGATACTGTGCACTTTTGTTAAGATG  900

seq1  AATGACCAAGTTATCTGCAAAAGATAAGACAAAAAAGATTG-AAGGACCA  948
      |||||||||||||||||||||||||||||| |||||||||| ||||||| 
seq2  AATGACCAAGTTATCTGCAAAAGATAAGAC-AAAAAGATTGAAAGGACCC  949

seq1  AGGGTGCT-AATTTACCTGTACCTAAAAATACATTA-TAGACAATTATA-  995
      ||| |||| ||||||||||||||||||||||||||| ||||| |||||| 
seq2  AGGTTGCTAAATTTACCTGTACCTAAAAATACATTATTAGAC-ATTATAT  998

seq1  TGCATGGT-GAGTAAAACCATGCT-CTTTTCCAACAT-TATCTCCATTAT  1042
      |||||||| |||| |||||||||| ||||| | |||| |  |||||||||
seq2  TGCATGGTGGAGT-AAACCATGCTCCTTTTTCCACATATTCCTCCATTAT  1047

seq1  ATGGTCTT  1050
      ||||||||
seq2  ATGGTCTT  1055


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