BAC Information

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BAC

Clone NameB6Ng01-200C21
Chromosome6 (Build37)
Map Location 125,064,239 - 125,065,352
singlet/doubletsinglet
Overlap geneChd4
Upstream geneEG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92
Downstream geneNol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200C21.bB6Ng01-200C21.g
ACCGA021314GA021315
length1,1191,142
definitionB6Ng01-200C21.b B6Ng01-200C21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagtcggtctaggtttctgctaaaataacacccaggcctataa
tcctagcaactgatgcaggaggatcgaacatttaagatctatgctaaata
aatagaaagatttgtttaaagaagaagaataacctaaccatgctctctga
agaaagcaaaatcatcattgggtcaggaggatgtgaaagcttgggatgcc
ggcctaggcctgagccaaggggattaaaggaccagcaaagaaagcaatgc
tttgaaattacttgagagaagaaatataaaccaaaccccacacattctct
tttggtagattttgccttctgttaaaaaaaacaaggagctatataaaagg
gaaagagaatgaatcctctcacatttgaaaaaacagctagttatttaatg
tattgtttcgtctacgtttttttctgaggtagcattaaaattttttttat
gggagctggagagatggctcaacaggtcagagcactgactgctcttccag
aggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctg
taatgagatctgaggccctcttctatagctaaggtgtactcatatataat
aaataaatctttaaaaaaaatttttttttatggagaactagtaagattaa
taaacatgagactctgggagagtctgtgacagttctgtggctctaaccat
gttgcccctgacaagtcagggcaaagctgagaacataaattaagcctgtt
actttctttctttccaaggcaagaaaatgttttcctgttgtttcaaatat
catctggctcttaattccactgttgagaggaatcaccaagaacagcactg
ccttggacccatactcacccccatctcttcttcccgtaccacatactgag
ccactttgaatgagctcaaatattcattcatgccctgcaattctgtgtct
tcagtctcaatcctggtttcgatccagcagtcgttcaatggccttatcgt
catagtggataacactgctgtcttctccctccttgttgtctccttctatg
aagaaccaaggggcctacaacccaagtcaagttcagcagcagcccaggaa
gaaaaatgcagttccctca
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagtctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctagtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggagga
ttctagaggaaattcaggacaagctatcagaagtaaagtggggagagaga
gtaggaacaaagaggaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagttaaggttaggtaggaatacctgga
gagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttagtagctctgaagcagatgaagaattctcctctgaag
aaacagactgggaggaagaagcagctcattatgagaaaaaagggtaccag
ccaggtaaagtgctagctaatcagttaaggaagccaaaagcggctggcga
aggccagtttgctgattggcctcagggcagtcggcttcaaggtccgccct
atgcggagcccccgccctgcgtagtgcgtcagcaatgcgcagagaggcaa
tgcgcagagagatgcgcagagaggcagtgcgcagagaggcagtgcgcaga
ctcattcattcccagagaggaacaaaggaaaatacaacaggcatttccag
tctttgaaggagccgagggtgggcgtgtccacgctccggtagaatactta
caaattaaagaactcgccgagtcggtccgtaaatacgaaccaatgctaat
tttaccttggtgcagttagacaggcttgccggcatggcactaactcctgc
cgactgcaaccgttgtaaagcgcctctccctagtatggcatatatgaatg
agagctcttggcatgaactgcacagcgcaagccgagcaacgcagcctgcc
ttgactcgaagcaagaagattgaacttgacttgtaccggatcagagctat
cgctgatcgacactacattgaggaccttatggccagaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_125064239_125065352
seq2: B6Ng01-200C21.b_46_1164 (reverse)

seq1  TGAGGGAACTGCATTTT--CTCCTGGGCTGCTGCTGAAC-TGACTTGGGT  47
      |||||||||||||||||   ||||||||||||||||||| ||||||||||
seq2  TGAGGGAACTGCATTTTTCTTCCTGGGCTGCTGCTGAACTTGACTTGGGT  50

seq1  TGTGGGCCCC-TGGTTCTTCATAGGAGGAGACAACAAGGAGGGAGAAGAC  96
      ||| |||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TGTAGGCCCCTTGGTTCTTCATAGAAGGAGACAACAAGGAGGGAGAAGAC  100

seq1  AGCAGTGTTATCCACTATGACGATAAGGCCATTGAACGACTGCTGGATCG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTTATCCACTATGACGATAAGGCCATTGAACGACTGCTGGATCG  150

seq1  AAACCAGGA-TGAGACTGAAGACACAGAATTGCAGGGCATGAATGAATAT  195
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGATTGAGACTGAAGACACAGAATTGCAGGGCATGAATGAATAT  200

seq1  TTGAGCTCATTCAAAGTGGCTCAGTATGTGGTACGGGAAGAAGAGATGGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCATTCAAAGTGGCTCAGTATGTGGTACGGGAAGAAGAGATGGG  250

seq1  GGTGAGTATGGGTCCAAGGCAGTGCTGTTCTTGGTGATTCCTCTCAACAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTATGGGTCCAAGGCAGTGCTGTTCTTGGTGATTCCTCTCAACAG  300

seq1  TGGAATTAAGAGCCAGATGATATTTGAAACAACAGGAAAACATTTTCTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAAGAGCCAGATGATATTTGAAACAACAGGAAAACATTTTCTTG  350

seq1  CCTTGGAAAGAAAGAAAGTAACAGGCTTAATTTATGTTCTCAGCTTTGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAAGAAAGAAAGTAACAGGCTTAATTTATGTTCTCAGCTTTGCC  400

seq1  CTGACTTGTCAGGGGCAACATGGTTAGAGCCACAGAACTGTCACAGACTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGTCAGGGGCAACATGGTTAGAGCCACAGAACTGTCACAGACTC  450

seq1  TCCCAGAGTCTCATGTTTATTAATCTTACTAGTTCTCCATAAAAAAAAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGTCTCATGTTTATTAATCTTACTAGTTCTCCATAAAAAAAAAT  500

seq1  TTTTTTTAAAGATTTATTTATTATATATGAGTACACCTTAGCTATAGAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAGATTTATTTATTATATATGAGTACACCTTAGCTATAGAAG  550

seq1  AGGGCCTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTG  600

seq1  GGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTGACCTGTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTGACCTGTTG  650

seq1  AGCCATCTCTCCAGCTCCCATAAAAAAAATTTTAATGCTACCTCAGAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCTCCAGCTCCCATAAAAAAAATTTTAATGCTACCTCAGAAAA  700

seq1  AAACGTAGACGAAACAATACATTAAATAACTAGCTGTTTTTTCAAATGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTAGACGAAACAATACATTAAATAACTAGCTGTTTTTTCAAATGTG  750

seq1  AGAGGATTCATTCTCTTTCCCTTTTATATAGCTCCTTGTTTTTTTTAACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTCATTCTCTTTCCCTTTTATATAGCTCCTTGTTTTTTTTAACA  800

seq1  GAAGGCAAAATCTACCAAAAGAGAATGTGTGGGGTTTGGTTTATATTTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAAATCTACCAAAAGAGAATGTGTGGGGTTTGGTTTATATTTCT  850

seq1  TCTCTCAAGTAATTTCAAAGCATTGCTTTCTTTGCTGGTCCTTTAATCCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAGTAATTTCAAAGCATTGCTTTCTTTGCTGGTCCTTTAATCCC  900

seq1  CTTGGCTCAGGCCTAGGCCGGCATCCCAAGCTTTCACATCCTCCTGACCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCAGGCCTAGGCCGGCATCCCAAGCTTTCACATCCTCCTGACCC  950

seq1  AATGATGATTTTGCTTTCTTCAGAGAGCATGGTTAGGTTATTCTTCTTCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGATTTTGCTTTCTTCAGAGAGCATGGTTAGGTTATTCTTCTTCT  1000

seq1  TTAAACAAATCTTTCTATTTATTTAGCATAGATCTTAAATGTTCGATCCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAATCTTTCTATTTATTTAGCATAGATCTTAAATGTTCGATCCT  1050

seq1  CCTGCATCAGTTGCTAGGATTATAGGCCTGGGTGTTATTTTAGCAGAAAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCAGTTGCTAGGATTATAGGCCTGGGTGTTATTTTAGCAGAAAC  1100

seq1  CTAGACCGACTTTGAATTC  1114
      |||||||||||||||||||
seq2  CTAGACCGACTTTGAATTC  1119