BAC Information

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BAC

Clone NameB6Ng01-200D04
Chromosome6 (Build37)
Map Location 20,317,802 - 20,444,744
singlet/doubletdoublet
Overlap geneLOC100040838
Upstream genenone
Downstream geneKcnd2, LOC100041343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200D04.bB6Ng01-200D04.g
ACCGA021328GA021329
length1,0601,114
definitionB6Ng01-200D04.b B6Ng01-200D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,317,802 - 20,318,869)(20,443,637 - 20,444,744)
sequence
gaattctttgtttaggtctgtacctcaatttcttttgagttatgtggctt
ttggacttctaacttcttgagttctttatgtatttttgatattaaccctc
tgtcagatgtggggttagtgaagattatttcccaatctgtaggttgagtt
ttgttctattgatagggttcttttgtattacagaaggttttcagtttcaa
gtggtctcttttatcttagaacttgatacactggttttgagaatggtatg
accgtacacgtgagcaacctcaaaattttacctacaaaggggctggatat
aaatttaactcaaaaatcattagtcattttattttatacaaatgattaat
gggataagaacaaaattagggaagcaacacccttcacaatagccacaaat
aatataaaatatattgatgtaactctaaccaagcaaacaagatctgtatg
acaagaacttcaaggctctgagcaaagaaatcatctcagaagatggaaag
atgccccatgctcatggatatacagtaggattaacataatgaaaatggtc
actttaccaaaagcaaattacagattcagtggaatctccatcaaaattcc
aacacatttcttcacaggcatggaaagagcaattctcaattttgtatgga
aaagcaaaaaaccacaggataggcaaaataattcacaaacttaaaagaaa
ttctgttgggagtcaccatacctgacctcaagctggactgaagagcaatt
gtgatatttattggtgcagagacatacaggtctatgaatgcaatagaatc
aaagacccaataaattaactagcatatacagatacctaatctttgacaag
gaagccaaaatcatccactatgaaaaatgaaaacatcttcaacaaacggt
gctgtaccaaccttcccaaaataattattatcatttccagttttatcaat
tgcaaattaattatgcacatttatggtatcagtgtgatattttcttttta
aaaaaaaaactttttataagtattttcctcattacattcaaatgcctatc
ccaaagtccc

gaattccaggggaaaatttttaatatttttcattgttagaatataaatga
tgattattctcatagaagaattgttatgtatttaacagtaacaagaggga
ttattaaatgaaccagattgtgaaaacatctcaaaagcccccttagggag
tctaattttcttttgcttaattttaaatcataatactttactaaattatg
aggtataagactgtgaaccttagcaaatcagcctatttgtgtctattata
tacactggcagcagaggaggaaaaatagcagtcattattgtggctaaaat
tataatatggaaaagacatgcatgataaaatgcttttgcaagcatctgag
gagtggagaatgaaggtaagaatagtatactaaattgtatgaagaaagaa
tctcttatgtgagggttttagtgctatgatttctaatttgcaacacaatg
actcacctgtatttaaaattgtctatatgaaagtgaatgtaattaatata
cagcatgacaatttcagacaaacaatagcaaaagccaaggcactaaaggc
agggacacactaaattacattcttcacagcaattctgagaggcccatggg
aactattagacacctaaaagtggaaaagtgaggtgagttcatgaaggcag
cagctgcaattattgaaaggaaaattgtcagtaaaagcctgttttgacag
aattccattgtttaaacagtcgtctctgagatagcttagagactgaagat
aatggcctcctagtaaagcagtagaaaaaaagggacaattacaattggag
ctattaaggcttataagcagctcttcaacagcagcttgggggccaatgtg
atagactaatatcaaacaccagtttcatagaagttagaagaatagttgct
ctgacttcccaatgcttttcaaaaacacagaagagctttgcaatttaatc
agagaattttacctagtgcattgcatgaattgcttgtagtcagtactact
atccaaatcatatactctgtagctgaatggaaggattgatatatgcaccc
attttaattaaattaaacccaaagtatagtccaatccttatatgcttgca
acatctccatcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20317802_20318869
seq2: B6Ng01-200D04.b_45_1104

seq1  GAATTCTTTGTTTAGGTCTGTACCTCAATTTCTTTTGAGTTATGTGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGGTCTGTACCTCAATTTCTTTTGAGTTATGTGGCTT  50

seq1  TTGGACTTCTAACTTCTTGAGTTCTTTATGTATTTTTGATATTAACCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTCTAACTTCTTGAGTTCTTTATGTATTTTTGATATTAACCCTC  100

seq1  TGTCAGATGTGGGGTTAGTGAAGATTATTTCCCAATCTGTAGGTTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATGTGGGGTTAGTGAAGATTATTTCCCAATCTGTAGGTTGAGTT  150

seq1  TTGTTCTATTGATAGGGTTCTTTTGTATTACAGAAGGTTTTCAGTTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTATTGATAGGGTTCTTTTGTATTACAGAAGGTTTTCAGTTTCAA  200

seq1  GTGGTCTCTTTTATCTTAGAACTTGATACACTGGTTTTGAGAATGGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTCTTTTATCTTAGAACTTGATACACTGGTTTTGAGAATGGTATG  250

seq1  ACCGTACACGTGAGCAACCTCAAAATTTTACCTACAAAGGGGCTGGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTACACGTGAGCAACCTCAAAATTTTACCTACAAAGGGGCTGGATAT  300

seq1  AAATTTAACTCAAAAATCATTAGTCATTTTATTTTATACAAATGATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAACTCAAAAATCATTAGTCATTTTATTTTATACAAATGATTAAT  350

seq1  GGGATAAGAACAAAATTAGGGAAGCAACACCCTTCACAATAGCCACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGAACAAAATTAGGGAAGCAACACCCTTCACAATAGCCACAAAT  400

seq1  AATATAAAATATATTGATGTAACTCTAACCAAGCAAACAAGATCTGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAATATATTGATGTAACTCTAACCAAGCAAACAAGATCTGTATG  450

seq1  ACAAGAACTTCAAGGCTCTGAGCAAAGAAATCATCTCAGAAGATGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACTTCAAGGCTCTGAGCAAAGAAATCATCTCAGAAGATGGAAAG  500

seq1  ATGCCCCATGCTCATGGATATACAGTAGGATTAACATAATGAAAATGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCATGCTCATGGATATACAGTAGGATTAACATAATGAAAATGGTC  550

seq1  ACTTTACCAAAAGCAAATTACAGATTCAGTGGAATCTCCATCAAAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCAAAAGCAAATTACAGATTCAGTGGAATCTCCATCAAAATTCC  600

seq1  AACACATTTCTTCACAGGCATGGAAAGAGCAATTCTCAATTTTGTATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTCTTCACAGGCATGGAAAGAGCAATTCTCAATTTTGTATGGA  650

seq1  AAAGCAAAAAACCACAGGATAGGCAAAATAATTCACAAACTTAAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAAAACCACAGGATAGGCAAAATAATTCACAAACTTAAAAGAAA  700

seq1  TTCTGTTGGGAGTCACCATACCTGACCTCAAGCTGGACTGAAGAGCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGGGAGTCACCATACCTGACCTCAAGCTGGACTGAAGAGCAATT  750

seq1  GTGATATTTATTGGTGCAGAGACATACAGGTCTATGAATGCAATAGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTTATTGGTGCAGAGACATACAGGTCTATGAATGCAATAGAATC  800

seq1  AAAGACCCAATAAATTAACTAGCATATACAGATACCTAATCTTTGACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCAATAAATTAACTAGCATATACAGATACCTAATCTTTGACAAG  850

seq1  GAAGCCAAAATCATCCACTATGAAAAATGAAAACATCTTCAACAAACGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAAAATCATCCACTATGAAAAATGAAAACATCTTCAACAAACGGT  900

seq1  GCTGTACCAACCTTTCCCAAAATAATTATTATCATTTTCCAGTTTTTATC  950
      |||||||||||| ||||||||||||||||||||| ||||||| |||||||
seq2  GCTGTACCAACC-TTCCCAAAATAATTATTATCA-TTTCCAG-TTTTATC  947

seq1  ACTTGCAAATTAATTATGCACATTTATGGTATTCAGTGTGATATTTTCTT  1000
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTGCAAATTAATTATGCACATTTATGGTA-TCAGTGTGATATTTTCTT  996

seq1  TTTAAAAAAAAAAACTTTTTATTAGGTATTTTCCTCATTTACATTTCCAA  1050
      ||| ||||||||||||||||| || |||||||||||| ||||| ||| ||
seq2  TTT-AAAAAAAAAACTTTTTA-TAAGTATTTTCCTCA-TTACA-TTCAAA  1042

seq1  TG-CTATCCCAAAAGTCCC  1068
      || ||||||| ||||||||
seq2  TGCCTATCCC-AAAGTCCC  1060


seq1: chr6_20443637_20444744
seq2: B6Ng01-200D04.g_65_1178 (reverse)

seq1  TATGATGGAGATGTTGTGCAAGCAATTAATAAGTATT-GACATAATTTTG  49
      ||||||||||||||  ||||||||    ||||| ||| |||   | ||||
seq2  TATGATGGAGATGT--TGCAAGCA---TATAAGGATTGGACTATACTTTG  45

seq1  TGGTTTATTTATAATTTAAAATGTGT-CATTAATACAAATCTTCCATTCA  98
       |||||| || ||| |||||||| || |||  || |||  ||||||||||
seq2  -GGTTTAATT-TAA-TTAAAATGGGTGCATATAT-CAATCCTTCCATTCA  91

seq1  -CAACAGATTATGATTTTTGTGT-GTGTGATTGAATTTGGGTCATTTCTG  146
       | ||||| |||    ||||  | ||   | ||| |    |  |||  ||
seq2  GCTACAGAGTATATGATTTGGATAGTAGTACTGACTACAAGCAATTCATG  141

seq1  CATTTCACTAAGTGAAATTTCTCTGATTAAATT-CCATGCTCTTCTGTGT  195
      || | ||||| || ||| ||||||||||||||| | | ||||||||||||
seq2  CAATGCACTAGGT-AAAATTCTCTGATTAAATTGCAAAGCTCTTCTGTGT  190

seq1  TTTTG-AAAGCATGGGGAAG-CAGAGGAAACTATTCTCTTAAC-TCTCTG  242
      ||||| ||||||| |||||| |||| | |||||||||  |||| ||| ||
seq2  TTTTGAAAAGCATTGGGAAGTCAGA-GCAACTATTCTTCTAACTTCTATG  239

seq1  -AACT-GTGTTTGATA-TAGTCTATCACAT--GGCCCCAAGCTGCTGTTG  287
       |||| |||||||||| |||||||||||||  | ||||||||||||||||
seq2  AAACTGGTGTTTGATATTAGTCTATCACATTGGCCCCCAAGCTGCTGTTG  289

seq1  -AGAGCTGCTAATAGGCC-TAATAGCTCC-ATTGTAATTGTCCCTTTTTT  334
       ||||||||| ||| ||| |||||||||| ||||||||||||||||||||
seq2  AAGAGCTGCTTATAAGCCTTAATAGCTCCAATTGTAATTGTCCCTTTTTT  339

seq1  TCTACTGCTTTACTAGGAGGCCATTATC-TCAGTCTCTAAGCTATCTCAG  383
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTACTGCTTTACTAGGAGGCCATTATCTTCAGTCTCTAAGCTATCTCAG  389

seq1  AGACGACTGTTTAAACAATGGAATTCTGTCAAAACAGGCTTTTACTGACA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGACTGTTTAAACAATGGAATTCTGTCAAAACAGGCTTTTACTGACA  439

seq1  ATTTTCCTTTCAATAATTGCAGCTGCTGCCTTCATGAACTCACCTCACTT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTTCAATAATTGCAGCTGCTGCCTTCATGAACTCACCTCACTT  489

seq1  TTCCACTTTTAGGTGTCTAATAGTTCCCATGGGCCTCTCAGAATTGCTGT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTTTAGGTGTCTAATAGTTCCCATGGGCCTCTCAGAATTGCTGT  539

seq1  GAAGAATGTAATTTAGTGTGTCCCTGCCTTTAGTGCCTTGGCTTTTGCTA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTAATTTAGTGTGTCCCTGCCTTTAGTGCCTTGGCTTTTGCTA  589

seq1  TTGTTTGTCTGAAATTGTCATGCTGTATATTAATTACATTCACTTTCATA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTCTGAAATTGTCATGCTGTATATTAATTACATTCACTTTCATA  639

seq1  TAGACAATTTTAAATACAGGTGAGTCATTGTGTTGCAAATTAGAAATCAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATTTTAAATACAGGTGAGTCATTGTGTTGCAAATTAGAAATCAT  689

seq1  AGCACTAAAACCCTCACATAAGAGATTCTTTCTTCATACAATTTAGTATA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAAAACCCTCACATAAGAGATTCTTTCTTCATACAATTTAGTATA  739

seq1  CTATTCTTACCTTCATTCTCCACTCCTCAGATGCTTGCAAAAGCATTTTA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTTACCTTCATTCTCCACTCCTCAGATGCTTGCAAAAGCATTTTA  789

seq1  TCATGCATGTCTTTTCCATATTATAATTTTAGCCACAATAATGACTGCTA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATGTCTTTTCCATATTATAATTTTAGCCACAATAATGACTGCTA  839

seq1  TTTTTCCTCCTCTGCTGCCAGTGTATATAATAGACACAAATAGGCTGATT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCCTCTGCTGCCAGTGTATATAATAGACACAAATAGGCTGATT  889

seq1  TGCTAAGGTTCACAGTCTTATACCTCATAATTTAGTAAAGTATTATGATT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGGTTCACAGTCTTATACCTCATAATTTAGTAAAGTATTATGATT  939

seq1  TAAAATTAAGCAAAAGAAAATTAGACTCCCTAAGGGGGCTTTTGAGATGT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAAGCAAAAGAAAATTAGACTCCCTAAGGGGGCTTTTGAGATGT  989

seq1  TTTCACAATCTGGTTCATTTAATAATCCCTCTTGTTACTGTTAAATACAT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATCTGGTTCATTTAATAATCCCTCTTGTTACTGTTAAATACAT  1039

seq1  AACAATTCTTCTATGAGAATAATCATCATTTATATTCTAACAATGAAAAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCTTCTATGAGAATAATCATCATTTATATTCTAACAATGAAAAA  1089

seq1  TATTAAAAATTTTCCCCTGGAATTC  1108
      |||||||||||||||||||||||||
seq2  TATTAAAAATTTTCCCCTGGAATTC  1114


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